Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold24G10508 Striga asiatica HOM05D007025 ORTHO05D008862 3.1e-68 261.5 121 100.0
SGA_v2.0_scaffold118G32439 Striga asiatica HOM05D007025 ORTHO05D008862 5.0e-18 94.7 65 72.3
unitig_749.g14331 Utricularia gibba HOM05D007025 ORTHO05D008862 9.8e-14 80.5 43 81.4
ClCG08G009640 Citrullus lanatus HOM05D007025 ORTHO05D008862 1.1e-12 77.0 41 82.9
Duzib168G1407 Durio zibethinus HOM05D007025 ORTHO05D008862 1.9e-12 76.3 41 82.9
Nitab4.5_0004078g0030 Nicotiana tabacum HOM05D007025 ORTHO05D008862 1.9e-12 76.3 65 58.5
Migut.C01196 Erythranthe guttata HOM05D007025 ORTHO05D008862 3.2e-12 75.5 43 81.4
Solyc11g066070.2 Solanum lycopersicum HOM05D007025 ORTHO05D008862 3.2e-12 75.5 65 58.5
Sopen11g025810 Solanum pennellii HOM05D007025 ORTHO05D008862 3.2e-12 75.5 65 58.5
PGSC0003DMG400000442 Solanum tuberosum HOM05D007025 ORTHO05D008862 3.2e-12 75.5 65 58.5
Nitab4.5_0001800g0060 Nicotiana tabacum HOM05D007025 ORTHO05D008862 4.1e-12 75.1 65 58.5
Peaxi162Scf00406g00059 Petunia axillaris HOM05D007025 ORTHO05D008862 4.1e-12 75.1 65 56.9
Thecc.09G323800 Theobroma cacao HOM05D007025 ORTHO05D008862 4.1e-12 75.1 43 76.7
CsaV3_6G031770 Cucumis sativus L. HOM05D007025 ORTHO05D008862 5.4e-12 74.7 43 74.4
Gohir.A03G041000 Gossypium hirsutum HOM05D007025 ORTHO05D008862 9.2e-12 73.9 41 80.5
CAN.G764.4 Capsicum annuum HOM05D007025 ORTHO05D008862 1.2e-11 73.6 65 56.9
Ciclev10003169m.g Citrus clementina HOM05D007025 ORTHO05D008862 1.2e-11 73.6 43 76.7
Gohir.D03G127100 Gossypium hirsutum HOM05D007025 ORTHO05D008862 1.6e-11 73.2 41 78.0
Gorai.003G133500 Gossypium raimondii HOM05D007025 ORTHO05D008862 1.6e-11 73.2 41 78.0
TAR374G1462 Trochodendron aralioides HOM05D007025 ORTHO05D008862 1.6e-11 73.2 43 72.1
MELO3C026555.2 Cucumis melo HOM05D007025 ORTHO05D008862 2.1e-11 72.8 43 74.4
Sed0024062 Sechium edule HOM05D007025 ORTHO05D008862 2.1e-11 72.8 41 78.0
vmacro00530 Vaccinium macrocarpon HOM05D007025 ORTHO05D008862 3.5e-11 72.0 43 74.4
PGR102G0249 Punica granatum HOM05D007025 ORTHO05D008862 4.6e-11 71.6 65 53.8
TWI79G0521 Tripterygium wilfordii HOM05D007025 ORTHO05D008862 4.6e-11 71.6 43 74.4
ATR0800G159 Amborella trichopoda HOM05D007025 ORTHO05D008862 7.8e-11 70.9 76 50.0
Aqoxy1G00724 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 7.8e-11 70.9 41 78.0
CiPaw.09G091100 Carya illinoinensis HOM05D007025 ORTHO05D008862 7.8e-11 70.9 41 75.6
AUR62001808 Chenopodium quinoa HOM05D002150 ORTHO05D002191 1.0e-10 70.5 41 73.2
AUR62009594 Chenopodium quinoa HOM05D007025 ORTHO05D002191 1.0e-10 70.5 41 73.2
Eucgr.J02059 Eucalyptus grandis HOM05D007025 ORTHO05D008862 1.0e-10 70.5 43 74.4
Lj1A680T12 Lonicera japonica HOM05D007025 ORTHO05D008862 1.0e-10 70.5 41 73.2
Manes.04G033800 Manihot esculenta HOM05D007025 ORTHO05D008862 1.0e-10 70.5 43 72.1
EL10Ac7g15997 Beta vulgaris HOM05D007025 ORTHO05D008862 1.3e-10 70.1 41 73.2
CSS0049041 Camellia sinensis var. sinensis HOM05D007025 ORTHO05D008862 1.3e-10 70.1 41 73.2
Rhsim09G0044100 Rhododendron simsii HOM05D007025 ORTHO05D008862 1.7e-10 69.7 43 69.8
Lsat_1_v5_gn_2_83821 Lactuca sativa HOM05D007025 ORTHO05D008862 2.3e-10 69.3 41 68.3
QL06p002232 Quercus lobata HOM05D007025 ORTHO05D008862 3.0e-10 68.9 41 73.2
CiPaw.13G095900 Carya illinoinensis HOM05D007025 ORTHO05D008862 3.9e-10 68.6 41 73.2
Hund04979 Selenicereus undatus HOM05D007025 ORTHO05D008862 3.9e-10 68.6 43 72.1
Lsat_1_v5_gn_5_79400 Lactuca sativa HOM05D007025 ORTHO05D008862 5.1e-10 68.2 41 65.9
Aqoxy7G01971 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 1.1e-09 67.0 41 73.2
Prupe.6G079900 Prunus persica HOM05D007025 ORTHO05D008862 1.1e-09 67.0 41 75.6
QL10p005425 Quercus lobata HOM05D007025 ORTHO05D008862 1.1e-09 67.0 41 70.7
Solyc06g076010.3 Solanum lycopersicum HOM05D007025 ORTHO05D008862 1.1e-09 67.0 40 77.5
Sopen06g032420 Solanum pennellii HOM05D007025 ORTHO05D008862 1.1e-09 67.0 40 77.5
CANSAT54G1063 Cannabis sativa HOM05D007025 ORTHO05D008862 1.5e-09 66.6 65 50.8
CiPaw.14G069900 Carya illinoinensis HOM05D007025 ORTHO05D008862 1.9e-09 66.2 41 70.7
COL.COLO4_20470 Corchorus olitorius HOM05D007025 ORTHO05D008862 1.9e-09 66.2 40 70.0
Hma1.2p1_1888F.1_g306550 Hydrangea macrophylla HOM05D007025 ORTHO05D008862 1.9e-09 66.2 41 70.7
SalBow5G5439 Salvia bowleyana HOM05D007025 ORTHO05D008862 4.3e-09 65.1 40 72.5
Cpa.g.sc840.2 Carica papaya HOM05D007025 ORTHO05D008862 5.6e-09 64.7 43 67.4
ECA238G2407 Erigeron canadensis HOM05D007025 ORTHO05D008862 5.6e-09 64.7 41 63.4
arahy.Tifrunner.gnm1.ann1.UND1EB Arachis hypogaea HOM05D007025 ORTHO05D008862 7.3e-09 64.3 41 70.7
SEGI_34612 Sequoiadendron giganteum HOM05D007025 ORTHO05D008862 9.5e-09 63.9 41 61.0
GSVIVG01024988001 Vitis vinifera HOM05D007025 ORTHO05D008862 9.5e-09 63.9 42 64.3
FAN24G0628 Fragaria x ananassa HOM05D007025 ORTHO05D008862 1.2e-08 63.5 71 52.1
MD11G1111500 Malus domestica HOM05D007025 ORTHO05D008862 1.2e-08 63.5 40 72.5
Nn5g26960 Nelumbo nucifera HOM05D007025 ORTHO05D008862 1.2e-08 63.5 43 65.1
arahy.Tifrunner.gnm1.ann1.XVFR0N Arachis hypogaea HOM05D007025 ORTHO05D008862 1.6e-08 63.2 41 68.3
Atru.chr3.3859 Acer truncatum HOM05D007025 ORTHO05D008862 2.1e-08 62.8 43 65.1
Cfa003375 Carpinus fangiana HOM05D007025 ORTHO05D008862 2.1e-08 62.8 43 67.4
Cc01_g12710 Coffea canephora HOM05D007025 ORTHO05D008862 2.1e-08 62.8 40 70.0
Haze_24077 Corylus avellana HOM05D007025 ORTHO05D008862 2.1e-08 62.8 43 67.4
FvH4_3g35770 Fragaria vesca HOM05D007025 ORTHO05D008862 2.1e-08 62.8 40 77.5
FAN11G3513 Fragaria x ananassa HOM05D007025 ORTHO05D008862 2.1e-08 62.8 40 77.5
FAN16G3493 Fragaria x ananassa HOM05D007025 ORTHO05D008862 2.1e-08 62.8 40 77.5
FAN25G2181 Fragaria x ananassa HOM05D007025 ORTHO05D008862 2.1e-08 62.8 40 77.5
AL1G53430 Arabidopsis lyrata HOM05D007025 ORTHO05D008862 2.8e-08 62.4 40 67.5
AT1G47278 Arabidopsis thaliana HOM05D007025 ORTHO05D008862 2.8e-08 62.4 40 67.5
RcHm_v2.0_Chr5g0006711 Rosa chinensis HOM05D007025 ORTHO05D008862 2.8e-08 62.4 40 77.5
RcHm_v2.0_Chr5g0063941 Rosa chinensis HOM05D007025 ORTHO05D008862 2.8e-08 62.4 40 77.5
Carub.0001s3607 Capsella rubella HOM05D007025 ORTHO05D008862 4.7e-08 61.6 40 65.0
MD02G1271300 Malus domestica HOM05D007025 ORTHO05D008862 8.1e-08 60.8 40 70.0
FAN21G1635 Fragaria x ananassa HOM05D007025 ORTHO05D008862 1.1e-07 60.5 38 78.9
PSO384G2653 Papaver somniferum HOM05D007025 ORTHO05D008862 1.1e-07 60.5 41 63.4
Glyma.05G134100 Glycine max HOM05D007025 ORTHO05D008862 2.3e-07 59.3 37 70.3
Glyma.08G088800 Glycine max HOM05D007025 ORTHO05D008862 2.3e-07 59.3 37 70.3
Phvul.002G188200 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 2.3e-07 59.3 37 70.3
THA.LOC104810785 Tarenaya hassleriana HOM05D007025 ORTHO05D008862 2.3e-07 59.3 40 62.5
Aa31sc152G30 Aethionema arabicum HOM05D007025 ORTHO05D008862 3.1e-07 58.9 40 62.5
CDE11G0504 Ceratophyllum demersum HOM05D007025 ORTHO05D008862 4.0e-07 58.5 43 62.8
Lj1g0011371 Lotus japonicus HOM05D007025 ORTHO05D008862 6.8e-07 57.8 37 67.6
Lj4g0013158 Lotus japonicus HOM05D007025 ORTHO05D008862 6.8e-07 57.8 37 67.6
Medtr4g094750 Medicago truncatula HOM05D007025 ORTHO05D008862 6.8e-07 57.8 37 64.9
Psat7g087480 Pisum sativum HOM05D007025 ORTHO05D008862 6.8e-07 57.8 37 64.9
Thhalv10011908m.g Eutrema salsugineum HOM05D007025 ORTHO05D008862 8.9e-07 57.4 43 62.8
CARHR036850 Cardamine hirsuta HOM05D007025 ORTHO05D008862 2.6e-06 55.8 41 61.0
Lalb_Chr12g0209151 Lupinus albus HOM05D007025 ORTHO05D008862 2.6e-06 55.8 37 67.6
COL.COLO4_18491 Corchorus olitorius HOM05D007025 ORTHO05D008862 3.4e-06 55.5 62 50.0
Phvul.007G101100 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 3.4e-06 55.5 35 71.4
Lalb_Chr12g0209181 Lupinus albus HOM05D007025 ORTHO05D008862 4.4e-06 55.1 55 50.9
SHI05954 Sapria himalayana HOM05D007025 ORTHO05D008862 5.8e-06 54.7 42 57.1
Sp1g34420 Schrenkiella parvula HOM05D007025 ORTHO05D008862 7.6e-06 54.3 40 62.5
BcaB04g17532 Brassica carinata HOM05D007025 ORTHO05D008862 9.9e-06 53.9 40 60.0
BcaC07g37223 Brassica carinata HOM05D007025 ORTHO05D008862 9.9e-06 53.9 40 60.0
A08p05760 Brassica napus HOM05D007025 ORTHO05D008862 9.9e-06 53.9 40 60.0
C08p06430 Brassica napus HOM05D007025 ORTHO05D008862 9.9e-06 53.9 40 60.0
BraA08t32579Z Brassica rapa HOM05D007025 ORTHO05D008862 9.9e-06 53.9 40 60.0


User provided reference genes

Program Settings