Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold24G10504 Striga asiatica HOM05D005489 ORTHO05D006629 5.0e-108 394.4 197 100.0
SGA_v2.0_scaffold118G32436 Striga asiatica HOM05D005489 ORTHO05D006629 3.4e-72 275.4 136 97.1
MSTRG.1486 Avicennia marina HOM05D005489 ORTHO05D006629 6.4e-71 271.2 136 93.4
SalBow1G3581 Salvia bowleyana HOM05D005489 ORTHO05D006629 3.5e-69 265.4 134 92.5
Migut.C01190 Erythranthe guttata HOM05D005489 ORTHO05D006629 1.3e-68 263.5 136 88.2
Ciclev10002818m.g Citrus clementina HOM05D005489 ORTHO05D006629 1.7e-68 263.1 136 90.4
Migut.N03320 Erythranthe guttata HOM05D005489 ORTHO05D006629 6.6e-68 261.2 136 91.2
Gohir.A06G041000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 1.9e-67 259.6 136 89.0
Gohir.D06G041900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 1.9e-67 259.6 136 89.0
Gorai.010G047100 Gossypium raimondii HOM05D005489 ORTHO05D006629 1.9e-67 259.6 136 89.0
Gohir.A01G187700 Gossypium hirsutum HOM05D005489 ORTHO05D006629 2.5e-67 259.2 136 90.4
PGSC0003DMG400027793 Solanum tuberosum HOM05D005489 ORTHO05D006629 4.3e-67 258.5 135 90.4
Aqoxy5G02479 Aquilegia oxysepala HOM05D005489 ORTHO05D006629 5.6e-67 258.1 136 88.2
Peaxi162Scf01011g00023 Petunia axillaris HOM05D005489 ORTHO05D006629 5.6e-67 258.1 135 88.9
Thecc.08G116800 Theobroma cacao HOM05D005489 ORTHO05D006629 5.6e-67 258.1 136 89.0
COL.COLO4_32811 Corchorus olitorius HOM05D005489 ORTHO05D006629 1.6e-66 256.5 136 87.5
PGR044G1289 Punica granatum HOM05D005489 ORTHO05D006629 1.6e-66 256.5 136 88.2
Dinv26716 Davidia involucrata HOM05D005489 ORTHO05D006629 2.8e-66 255.8 136 87.5
HanXRQChr11g0326271 Helianthus annuus HOM05D005489 ORTHO05D006629 2.8e-66 255.8 136 87.5
Hma1.2p1_0221F.1_g093180 Hydrangea macrophylla HOM05D005489 ORTHO05D006629 2.8e-66 255.8 136 87.5
Nn1g08538 Nelumbo nucifera HOM05D005489 ORTHO05D006629 3.6e-66 255.4 135 87.4
TWI56G0906 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 3.6e-66 255.4 136 88.2
CAN.G255.20 Capsicum annuum HOM05D005489 ORTHO05D006629 4.8e-66 255.0 135 87.4
A05p23180 Brassica napus HOM05D005489 ORTHO05D006629 6.2e-66 254.6 138 84.1
BraA05t21185Z Brassica rapa HOM05D005489 ORTHO05D006629 6.2e-66 254.6 138 84.1
Sopen11g008580 Solanum pennellii HOM05D005489 ORTHO05D006629 6.2e-66 254.6 135 88.1
AL1G51120 Arabidopsis lyrata HOM05D005489 ORTHO05D006629 8.1e-66 254.2 136 85.3
AT1G36980 Arabidopsis thaliana HOM05D005489 ORTHO05D006629 8.1e-66 254.2 136 85.3
EL10Ac1g00039 Beta vulgaris HOM05D005489 ORTHO05D006629 8.1e-66 254.2 136 87.5
Duzib041G0073 Durio zibethinus HOM05D005489 ORTHO05D006629 8.1e-66 254.2 136 88.2
PSO017G5790 Papaver somniferum HOM05D005489 ORTHO05D006629 8.1e-66 254.2 136 88.2
PSO170G3859 Papaver somniferum HOM05D005489 ORTHO05D006629 8.1e-66 254.2 136 88.2
Manes.18G073000 Manihot esculenta HOM05D005489 ORTHO05D006629 1.1e-65 253.8 136 86.8
HanXRQChr09g0260151 Helianthus annuus HOM05D005489 ORTHO05D006629 1.4e-65 253.4 135 87.4
Solyc11g013550.2 Solanum lycopersicum HOM05D005489 ORTHO05D006629 1.4e-65 253.4 135 87.4
BcaB03g13640 Brassica carinata HOM05D005489 ORTHO05D006629 1.8e-65 253.1 136 84.6
C05p36630 Brassica napus HOM05D005489 ORTHO05D006629 1.8e-65 253.1 136 84.6
MELO3C022783.2 Cucumis melo HOM05D005489 ORTHO05D006629 1.8e-65 253.1 136 86.0
Gohir.A02G075000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 1.8e-65 253.1 136 85.3
Gohir.D02G082100 Gossypium hirsutum HOM05D005489 ORTHO05D006629 1.8e-65 253.1 136 86.0
TAR197G0004 Trochodendron aralioides HOM05D005489 ORTHO05D006629 1.8e-65 253.1 136 87.5
Lsat_1_v5_gn_4_135561 Lactuca sativa HOM05D005489 ORTHO05D006629 2.4e-65 252.7 136 87.5
Sabra02G0070300 Salix brachista HOM05D005489 ORTHO05D006629 2.4e-65 252.7 136 87.5
THA.LOC104806808 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 2.4e-65 252.7 136 85.3
TAR628G1556 Trochodendron aralioides HOM05D005489 ORTHO05D006629 2.4e-65 252.7 136 88.2
CARHR034780 Cardamine hirsuta HOM05D005489 ORTHO05D006629 3.1e-65 252.3 136 83.1
CDE06G1809 Ceratophyllum demersum HOM05D005489 ORTHO05D006629 3.1e-65 252.3 136 86.0
Carub.0001s3388 Capsella rubella HOM05D005489 ORTHO05D006629 4.0e-65 251.9 136 84.6
Dinv27383 Davidia involucrata HOM05D005489 ORTHO05D006629 4.0e-65 251.9 136 86.8
THA.LOC104813132 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 4.0e-65 251.9 136 84.6
GSVIVG01008943001 Vitis vinifera HOM05D005489 ORTHO05D006629 4.0e-65 251.9 136 88.2
Atru.chr13.1318 Acer truncatum HOM05D005489 ORTHO05D006629 5.3e-65 251.5 136 86.8
Atru.chr13.1362 Acer truncatum HOM05D005489 ORTHO05D006629 5.3e-65 251.5 136 86.8
Sp1g31180 Schrenkiella parvula HOM05D005489 ORTHO05D006629 5.3e-65 251.5 136 83.8
ECA232G0625 Erigeron canadensis HOM05D005489 ORTHO05D006629 6.9e-65 251.1 132 88.6
CiPaw.05G228700 Carya illinoinensis HOM05D005489 ORTHO05D006629 9.0e-65 250.8 136 86.0
Sed0015736 Sechium edule HOM05D005489 ORTHO05D006629 9.0e-65 250.8 136 84.6
Duzib093G1687 Durio zibethinus HOM05D005489 ORTHO05D006629 1.2e-64 250.4 137 86.1
Potri.002G089300 Populus trichocarpa HOM05D005489 ORTHO05D006629 1.2e-64 250.4 136 86.0
Thhalv10005115m.g Eutrema salsugineum HOM05D005489 ORTHO05D006629 1.5e-64 250.0 136 83.1
QL12p035283 Quercus lobata HOM05D005489 ORTHO05D006629 1.5e-64 250.0 135 86.7
TWI12G0464 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 2.6e-64 249.2 136 84.6
MD15G1359200 Malus domestica HOM05D005489 ORTHO05D006629 5.8e-64 248.1 136 85.3
FvH4_5g38950 Fragaria vesca HOM05D005489 ORTHO05D006629 7.6e-64 247.7 136 86.0
FAN04G1587 Fragaria x ananassa HOM05D005489 ORTHO05D006629 7.6e-64 247.7 136 86.0
FAN08G2064 Fragaria x ananassa HOM05D005489 ORTHO05D006629 7.6e-64 247.7 136 86.0
FAN18G3455 Fragaria x ananassa HOM05D005489 ORTHO05D006629 7.6e-64 247.7 136 86.0
Nn5g27958 Nelumbo nucifera HOM05D005489 ORTHO05D006629 1.3e-63 246.9 133 86.5
Prupe.1G506000 Prunus persica HOM05D005489 ORTHO05D006629 2.9e-63 245.7 136 84.6
RcHm_v2.0_Chr7g0240921 Rosa chinensis HOM05D005489 ORTHO05D006629 2.9e-63 245.7 136 85.3
Oeu032962.1 Olea europaea HOM05D005489 ORTHO05D006629 1.4e-62 243.4 136 85.3
Medtr3g073300 Medicago truncatula HOM05D005489 ORTHO05D006629 1.9e-62 243.0 136 83.8
Ca_25761_v3 Cicer arietinum L. HOM05D005489 ORTHO05D006629 2.4e-62 242.7 136 83.1
arahy.Tifrunner.gnm1.ann1.204R5H Arachis hypogaea HOM05D005489 ORTHO05D006629 3.2e-62 242.3 136 80.9
arahy.Tifrunner.gnm1.ann1.64ZY3M Arachis hypogaea HOM05D005489 ORTHO05D006629 3.2e-62 242.3 136 80.9
Glyma.04G253700 Glycine max HOM05D005489 ORTHO05D006629 3.2e-62 242.3 136 82.4
Potri.005G171901 Populus trichocarpa HOM05D005489 ORTHO05D006629 4.2e-62 241.9 136 83.1
Glyma.06G108600 Glycine max HOM05D005489 ORTHO05D006629 5.4e-62 241.5 136 82.4
TPR.G32948 Trifolium pratense HOM05D005489 ORTHO05D006629 9.3e-62 240.7 136 81.6
VMungo1127G1458 Vigna mungo HOM05D005489 ORTHO05D006629 9.3e-62 240.7 136 81.6
MBI06_g01046_MAGBIO Magnolia biondii HOM05D005489 ORTHO05D006629 1.6e-61 240.0 135 84.4
Nitab4.5_0000051g0120 Nicotiana tabacum HOM05D005489 ORTHO05D006629 2.1e-61 239.6 130 85.4
Psat5g135600 Pisum sativum HOM05D005489 ORTHO05D006629 2.1e-61 239.6 136 81.6
Lalb_Chr11g0065701 Lupinus albus HOM05D005489 ORTHO05D006629 2.7e-61 239.2 137 79.6
Lalb_Chr08g0241711 Lupinus albus HOM05D005489 ORTHO05D006629 4.6e-61 238.4 136 80.1
Oeu043793.1 Olea europaea HOM05D005489 ORTHO05D006629 4.6e-61 238.4 138 81.9
Aa31LG6G9070 Aethionema arabicum HOM05D005489 ORTHO05D006629 6.0e-61 238.0 124 86.3
Phvul.011G165300 Phaseolus vulgaris HOM05D005489 ORTHO05D006629 6.0e-61 238.0 136 80.1
Gorai.002G220400 Gossypium raimondii HOM05D005489 ORTHO05D006629 7.8e-61 237.7 142 81.0
Lj1g0000272 Lotus japonicus HOM05D005489 ORTHO05D006629 1.0e-60 237.3 136 82.4
Sc01g0001550 Simmondsia chinensis HOM05D005489 ORTHO05D006629 1.5e-59 233.4 124 87.9
unitig_747.g21477 Utricularia gibba HOM05D003597 ORTHO05D004420 1.5e-59 233.4 212 56.6
Gohir.D01G181900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 3.3e-59 232.3 124 88.7
Nitab4.5_0002332g0020 Nicotiana tabacum HOM05D005489 ORTHO05D006629 4.3e-59 231.9 125 84.8
Rhsim06G0109100 Rhododendron simsii HOM05D005489 ORTHO05D006629 2.8e-58 229.2 124 85.5
Hund16821 Selenicereus undatus HOM05D005489 ORTHO05D006629 2.8e-58 229.2 132 82.6
DCAR_014792 Daucus carota HOM05D005489 ORTHO05D006629 3.6e-58 228.8 124 84.7
Cc10_g10440 Coffea canephora HOM05D005489 ORTHO05D006629 3.1e-57 225.7 124 87.9
FAN13G3020 Fragaria x ananassa HOM05D005489 ORTHO05D006629 4.0e-57 225.3 131 81.7
Zm00001eb244520 Zea mays HOM05D005489 ORTHO05D006629 3.8e-55 218.8 141 70.9
HPP92_005944 Vanilla planifolia HOM05D005489 ORTHO05D006629 6.4e-55 218.0 130 78.5
Os02g0566900 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 2.4e-54 216.1 131 72.5
HPP92_002297 Vanilla planifolia HOM05D005489 ORTHO05D006629 2.4e-54 216.1 133 73.7
Zm00001eb100550 Zea mays HOM05D005489 ORTHO05D006629 9.3e-54 214.2 138 71.7
Os09g0453000 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 1.2e-53 213.8 138 73.2
Actinidia29431 Actinidia chinensis HOM05D005489 ORTHO05D006629 2.1e-53 213.0 133 74.4
BolC5t32398H Brassica oleracea HOM05D005489 ORTHO05D006629 6.7e-52 208.0 120 80.0
AagrBONN_evm.TU.Sc2ySwM_344.2049 Anthoceros agrestis HOM05D005489 ORTHO05D006629 1.9e-51 206.5 131 71.8
BcaC05g27681 Brassica carinata HOM05D005489 ORTHO05D006629 1.1e-49 200.7 121 79.3
SEGI_34511 Sequoiadendron giganteum HOM05D005489 ORTHO05D006629 1.8e-49 199.9 136 69.1
SMO116G0262 Selaginella moellendorffii HOM05D005489 ORTHO05D006629 9.0e-49 197.6 131 68.7
Pp3c2_28270 Physcomitrium patens HOM05D005489 ORTHO05D006629 2.5e-46 189.5 136 64.7
Pp3c1_10200 Physcomitrium patens HOM05D005489 ORTHO05D006629 3.5e-45 185.7 134 63.4
Mapoly0004s0020 Marchantia polymorpha HOM05D005489 ORTHO05D006629 1.0e-44 184.1 153 60.8
Gorai.005G092000 Gossypium raimondii HOM05D005489 ORTHO05D006629 9.0e-41 171.0 92 88.0
CBR_g30829 Chara braunii HOM05D005489 ORTHO05D006629 5.8e-40 168.3 125 60.8
Sabra05G0129400 Salix brachista HOM05D005489 ORTHO05D006629 2.9e-39 166.0 125 68.8
Haze_00523 Corylus avellana HOM05D005489 ORTHO05D006629 1.9e-35 153.3 76 89.5
CANSAT25G2554 Cannabis sativa HOM05D005489 ORTHO05D006629 1.6e-34 150.2 92 72.8
BcaC05g27682 Brassica carinata HOM05D005489 ORTHO05D006629 4.8e-34 148.7 74 85.1
C05p36640 Brassica napus HOM05D005489 ORTHO05D006629 4.8e-34 148.7 74 85.1
Cfa015959 Carpinus fangiana HOM05D005489 ORTHO05D006629 8.2e-34 147.9 131 59.5
ClCG03G009110 Citrullus lanatus HOM05D005489 ORTHO05D006629 1.8e-33 146.7 74 86.5
CsaV3_5G023520 Cucumis sativus L. HOM05D005489 ORTHO05D006629 1.8e-33 146.7 74 86.5
TAR127G0005 Trochodendron aralioides HOM05D005489 ORTHO05D006629 3.1e-33 146.0 75 85.3
ATR0121G008 Amborella trichopoda HOM05D005489 ORTHO05D006629 5.3e-33 145.2 74 86.5
DCAR_023128 Daucus carota HOM05D005489 ORTHO05D006629 2.6e-32 142.9 75 80.0
Nn2g15248 Nelumbo nucifera HOM05D005489 ORTHO05D006629 6.5e-31 138.3 73 83.6
Oeu050268.1 Olea europaea HOM05D005489 ORTHO05D006629 3.9e-28 129.0 76 77.6
AUR62004694 Chenopodium quinoa HOM05D005489 ORTHO05D006629 1.5e-27 127.1 140 52.9
Cre01.g042950 Chlamydomonas reinhardtii HOM05D005489 ORTHO05D006629 7.4e-27 124.8 131 43.5
Sopen11g008620 Solanum pennellii HOM05D000147 ORTHO05D004360 2.6e-24 116.3 72 80.6
PRCOL_00003843 Prasinoderma coloniale HOM05D005489 ORTHO05D006629 4.4e-19 99.0 117 46.2
SalBow7G4082 Salvia bowleyana HOM05D005489 ORTHO05D006629 1.4e-17 94.0 165 41.2
ClCG03G009140 Citrullus lanatus HOM05D005489 ORTHO05D006629 3.5e-16 89.4 50 86.0
Eucgr.F04378 Eucalyptus grandis HOM05D005489 ORTHO05D006629 5.0e-15 85.5 47 78.7
Solyc11g013660.1 Solanum lycopersicum HOM05D005489 ORTHO05D006629 3.9e-12 75.9 70 61.4
SalBow7G1125 Salvia bowleyana HOM05D002998 ORTHO05D006629 1.3e-10 70.9 35 80.0
Os08g0469200 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 9.1e-09 64.7 68 48.5
PRCOL_00003098 Prasinoderma coloniale HOM05D001685 ORTHO05D007488 2.0e-08 63.5 143 30.8


User provided reference genes

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