Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold24G10489 Striga asiatica HOM05D005652 ORTHO05D007300 6.9e-45 183.7 101 100.0
PGSC0003DMG400030853 Solanum tuberosum HOM05D005652 ORTHO05D007300 6.0e-41 170.6 97 89.7
Solyc08g075780.4 Solanum lycopersicum HOM05D005652 ORTHO05D007300 3.0e-40 168.3 97 88.7
Hund16832 Selenicereus undatus HOM05D005652 ORTHO05D007300 1.1e-39 166.4 86 96.5
Sc23g0000830 Simmondsia chinensis HOM05D005652 ORTHO05D007300 2.5e-39 165.2 97 88.7
MSTRG.22423 Avicennia marina HOM05D005652 ORTHO05D007300 3.3e-39 164.9 97 89.7
EL10Ac1g00017 Beta vulgaris HOM05D005652 ORTHO05D007300 3.3e-39 164.9 97 86.6
Migut.N03303 Erythranthe guttata HOM05D005652 ORTHO05D007300 3.3e-39 164.9 97 89.7
Dinv27358 Davidia involucrata HOM05D005652 ORTHO05D007300 4.3e-39 164.5 92 93.5
Oeu050889.1 Olea europaea HOM05D005652 ORTHO05D007300 4.3e-39 164.5 86 96.5
TWI56G0667 Tripterygium wilfordii HOM05D005652 ORTHO05D007300 4.3e-39 164.5 92 93.5
Manes.18G074500 Manihot esculenta HOM05D005652 ORTHO05D007300 5.7e-39 164.1 93 92.5
Nitab4.5_0000030g0080 Nicotiana tabacum HOM05D005652 ORTHO05D007300 5.7e-39 164.1 95 87.4
Peaxi162Scf00408g00839 Petunia axillaris HOM05D005652 ORTHO05D007300 5.7e-39 164.1 97 88.7
Ah.05g172270 Amaranthus hybridus HOM05D005652 ORTHO05D007300 7.4e-39 163.7 96 86.5
Nn5g28127 Nelumbo nucifera HOM05D005652 ORTHO05D007300 7.4e-39 163.7 83 98.8
Nitab4.5_0013867g0020 Nicotiana tabacum HOM05D005652 ORTHO05D007300 7.4e-39 163.7 95 87.4
PGR042G1865 Punica granatum HOM05D005652 ORTHO05D007300 7.4e-39 163.7 89 93.3
Ciclev10002945m.g Citrus clementina HOM05D005652 ORTHO05D007300 9.6e-39 163.3 98 87.8
Peaxi162Scf00876g00433 Petunia axillaris HOM05D005652 ORTHO05D007300 9.6e-39 163.3 95 91.6
unitig_37.g12684 Utricularia gibba HOM05D005652 ORTHO05D007300 9.6e-39 163.3 92 90.2
GSVIVG01008919001 Vitis vinifera HOM05D005652 ORTHO05D007300 9.6e-39 163.3 87 94.3
CDE06G1598 Ceratophyllum demersum HOM05D005652 ORTHO05D007300 1.3e-38 162.9 92 92.4
CDE08G1473 Ceratophyllum demersum HOM05D005652 ORTHO05D007300 1.3e-38 162.9 92 92.4
ClCG03G009400 Citrullus lanatus HOM05D005652 ORTHO05D007300 1.3e-38 162.9 92 92.4
Cc06_g19090 Coffea canephora HOM05D005652 ORTHO05D007300 1.3e-38 162.9 92 92.4
MELO3C003038.2 Cucumis melo HOM05D005652 ORTHO05D007300 1.3e-38 162.9 92 92.4
CsaV3_5G023210 Cucumis sativus L. HOM05D005652 ORTHO05D007300 1.3e-38 162.9 92 92.4
Duzib041G0199 Durio zibethinus HOM05D005652 ORTHO05D007300 1.3e-38 162.9 92 92.4
Duzib093G1773 Durio zibethinus HOM05D005652 ORTHO05D007300 1.3e-38 162.9 92 92.4
FAN20G1151 Fragaria x ananassa HOM05D005652 ORTHO05D007300 1.3e-38 162.9 83 97.6
FAN24G1202 Fragaria x ananassa HOM05D000102 ORTHO05D003793 1.3e-38 162.9 83 97.6
FAN27G1241 Fragaria x ananassa HOM05D005652 ORTHO05D007300 1.3e-38 162.9 83 97.6
Glyma.14G163800 Glycine max HOM05D005652 ORTHO05D007300 1.3e-38 162.9 92 92.4
Gohir.A06G041900 Gossypium hirsutum HOM05D005652 ORTHO05D007300 1.3e-38 162.9 92 92.4
Gohir.D06G042900 Gossypium hirsutum HOM05D005652 ORTHO05D007300 1.3e-38 162.9 92 92.4
Gorai.005G091100 Gossypium raimondii HOM05D005652 ORTHO05D007300 1.3e-38 162.9 92 92.4
Gorai.010G048100 Gossypium raimondii HOM05D005652 ORTHO05D007300 1.3e-38 162.9 92 92.4
Hma1.2p1_0009F.1_g006210 Hydrangea macrophylla HOM05D005652 ORTHO05D007300 1.3e-38 162.9 92 92.4
Lj1g0016776 Lotus japonicus HOM05D005652 ORTHO05D007300 1.3e-38 162.9 92 92.4
Nitab4.5_0000943g0120 Nicotiana tabacum HOM05D005652 ORTHO05D007300 1.3e-38 162.9 92 92.4
Sed0000902 Sechium edule HOM05D005652 ORTHO05D007300 1.3e-38 162.9 92 92.4
Thecc.08G119900 Theobroma cacao HOM05D005652 ORTHO05D007300 1.3e-38 162.9 92 92.4
TWI12G1472 Tripterygium wilfordii HOM05D005652 ORTHO05D007300 1.3e-38 162.9 92 92.4
CAN.G1483.5 Capsicum annuum HOM05D005652 ORTHO05D007300 1.6e-38 162.5 86 95.3
Nitab4.5_0014082g0020 Nicotiana tabacum HOM05D005652 ORTHO05D007300 1.6e-38 162.5 91 95.6
Potri.002G087200 Populus trichocarpa HOM05D005652 ORTHO05D007300 1.6e-38 162.5 93 91.4
Sabra02G0068700 Salix brachista HOM05D005652 ORTHO05D007300 1.6e-38 162.5 93 91.4
Atru.chr13.1343 Acer truncatum HOM05D005652 ORTHO05D007300 2.1e-38 162.2 81 100.0
AT1G77710 Arabidopsis thaliana HOM05D005652 ORTHO05D007300 2.1e-38 162.2 85 94.1
arahy.Tifrunner.gnm1.ann1.AJPJ4J Arachis hypogaea HOM05D005652 ORTHO05D007300 2.1e-38 162.2 81 100.0
MSTRG.1473 Avicennia marina HOM05D005652 ORTHO05D007300 2.1e-38 162.2 84 96.4
CSS0012578 Camellia sinensis var. sinensis HOM05D005652 ORTHO05D007300 2.1e-38 162.2 81 100.0
CANSAT54G2625 Cannabis sativa HOM05D005652 ORTHO05D007300 2.1e-38 162.2 81 100.0
CiPaw.05G226800 Carya illinoinensis HOM05D005652 ORTHO05D007300 2.1e-38 162.2 81 100.0
Ca_19025_v3 Cicer arietinum L. HOM05D005652 ORTHO05D007300 2.1e-38 162.2 81 100.0
Ca_26775_v3 Cicer arietinum L. HOM05D005652 ORTHO05D007300 2.1e-38 162.2 81 100.0
Eucgr.F03755 Eucalyptus grandis HOM05D005652 ORTHO05D007300 2.1e-38 162.2 81 100.0
Glyma.04G252400 Glycine max HOM05D005652 ORTHO05D007300 2.1e-38 162.2 81 100.0
Glyma.06G110100 Glycine max HOM05D005652 ORTHO05D007300 2.1e-38 162.2 81 100.0
Lalb_Chr08g0241571 Lupinus albus HOM05D005652 ORTHO05D007300 2.1e-38 162.2 81 100.0
Lalb_Chr23g0270881 Lupinus albus HOM05D005652 ORTHO05D007300 2.1e-38 162.2 81 100.0
MBI09_g06382_MAGBIO Magnolia biondii HOM05D005652 ORTHO05D007300 2.1e-38 162.2 83 97.6
MD08G1169400 Malus domestica HOM05D005652 ORTHO05D007300 2.1e-38 162.2 81 100.0
MD15G1356000 Malus domestica HOM05D005652 ORTHO05D007300 2.1e-38 162.2 81 100.0
Medtr5g059210 Medicago truncatula HOM05D005652 ORTHO05D007300 2.1e-38 162.2 81 100.0
Phvul.009G121900 Phaseolus vulgaris HOM05D005652 ORTHO05D007300 2.1e-38 162.2 81 100.0
Psat2g096080 Pisum sativum HOM05D005652 ORTHO05D007300 2.1e-38 162.2 81 100.0
RcHm_v2.0_Chr6g0294951 Rosa chinensis HOM05D005652 ORTHO05D007300 2.1e-38 162.2 81 100.0
SalBow7G3105 Salvia bowleyana HOM05D005652 ORTHO05D007300 2.1e-38 162.2 96 87.5
Solyc12g096120.2 Solanum lycopersicum HOM05D005652 ORTHO05D007300 2.1e-38 162.2 81 100.0
Sopen12g032000 Solanum pennellii HOM05D005652 ORTHO05D007300 2.1e-38 162.2 81 100.0
PGSC0003DMG400029291 Solanum tuberosum HOM05D005652 ORTHO05D007300 2.1e-38 162.2 81 100.0
THA.LOC104813142 Tarenaya hassleriana HOM05D005652 ORTHO05D007300 2.1e-38 162.2 81 100.0
THA.LOC104817112 Tarenaya hassleriana HOM05D005652 ORTHO05D007300 2.1e-38 162.2 81 100.0
Aqoxy6G01736 Aquilegia oxysepala HOM05D005652 ORTHO05D007300 2.8e-38 161.8 92 91.3
FvH4_2g26390 Fragaria vesca HOM05D005652 ORTHO05D007300 2.8e-38 161.8 83 96.4
Oeu050252.1 Olea europaea HOM05D005652 ORTHO05D007300 2.8e-38 161.8 92 91.3
Hund27043 Selenicereus undatus HOM05D005652 ORTHO05D007300 2.8e-38 161.8 81 98.8
Zm00001eb140360 Zea mays HOM05D005652 ORTHO05D007300 2.8e-38 161.8 97 84.5
Aa31LG4G7830 Aethionema arabicum HOM05D005652 ORTHO05D007300 3.7e-38 161.4 85 94.1
AL2G37930 Arabidopsis lyrata HOM05D005652 ORTHO05D007300 3.7e-38 161.4 85 94.1
CARHR071220 Cardamine hirsuta HOM05D005652 ORTHO05D007300 3.7e-38 161.4 85 94.1
Thhalv10019370m.g Eutrema salsugineum HOM05D005652 ORTHO05D007300 3.7e-38 161.4 85 94.1
PSO170G5049 Papaver somniferum HOM05D005652 ORTHO05D007300 3.7e-38 161.4 83 97.6
Potri.005G173800 Populus trichocarpa HOM05D005652 ORTHO05D007300 3.7e-38 161.4 93 90.3
Sp5g32880 Schrenkiella parvula HOM05D005652 ORTHO05D007300 3.7e-38 161.4 85 94.1
ATR0041G005 Amborella trichopoda HOM05D005652 ORTHO05D007300 4.8e-38 161.0 83 96.4
Haze_00495 Corylus avellana HOM05D000102 ORTHO05D003793 4.8e-38 161.0 81 98.8
Gohir.A02G074200 Gossypium hirsutum HOM05D005652 ORTHO05D007300 4.8e-38 161.0 92 91.3
Os01g0962400 Oryza sativa ssp. japonica HOM05D005652 ORTHO05D007300 4.8e-38 161.0 83 96.4
Prupe.1G503300 Prunus persica HOM05D005652 ORTHO05D007300 4.8e-38 161.0 81 98.8
TPR.G8501 Trifolium pratense HOM05D005652 ORTHO05D007300 4.8e-38 161.0 81 98.8
TAR376G0464 Trochodendron aralioides HOM05D005652 ORTHO05D007300 4.8e-38 161.0 81 98.8
HanXRQChr14g0432351 Helianthus annuus HOM05D005652 ORTHO05D007300 6.3e-38 160.6 81 98.8
BcaB02g07127 Brassica carinata HOM05D005652 ORTHO05D007300 8.2e-38 160.2 81 97.5
BcaB05g25069 Brassica carinata HOM05D005652 ORTHO05D007300 8.2e-38 160.2 81 97.5
BcaC03g15763 Brassica carinata HOM05D005652 ORTHO05D007300 8.2e-38 160.2 81 97.5
BcaC08g45458 Brassica carinata HOM05D005652 ORTHO05D007300 8.2e-38 160.2 81 97.5
A07p27870 Brassica napus HOM05D005652 ORTHO05D007300 8.2e-38 160.2 81 97.5
C06p30860 Brassica napus HOM05D005652 ORTHO05D007300 8.2e-38 160.2 81 97.5
BolC6t38248H Brassica oleracea HOM05D005652 ORTHO05D007300 8.2e-38 160.2 81 97.5
BraA07t30426Z Brassica rapa HOM05D005652 ORTHO05D007300 8.2e-38 160.2 81 97.5
Carub.0002s2459 Capsella rubella HOM05D005652 ORTHO05D007300 8.2e-38 160.2 81 97.5
arahy.Tifrunner.gnm1.ann1.KZ1VTZ Arachis hypogaea HOM05D005652 ORTHO05D007300 1.1e-37 159.8 81 98.8
PSO528G0083 Papaver somniferum HOM05D005652 ORTHO05D007300 1.1e-37 159.8 81 98.8
Gohir.D02G081400 Gossypium hirsutum HOM05D005652 ORTHO05D007300 1.4e-37 159.5 92 91.3
Migut.C01167 Erythranthe guttata HOM05D005652 ORTHO05D007300 4.1e-37 157.9 80 98.8
CBR_g44443 Chara braunii HOM05D005652 ORTHO05D007300 6.9e-37 157.1 85 91.8
Lsat_1_v5_gn_5_65281 Lactuca sativa HOM05D005652 ORTHO05D007300 6.9e-37 157.1 81 96.3
Pp3c6_16720 Physcomitrium patens HOM05D005652 ORTHO05D007300 6.9e-37 157.1 81 96.3
ECA238G1260 Erigeron canadensis HOM05D005652 ORTHO05D007300 9.0e-37 156.8 79 98.7
Mapoly0081s0039 Marchantia polymorpha HOM05D005652 ORTHO05D007300 1.5e-36 156.0 81 95.1
AagrBONN_evm.TU.Sc2ySwM_362.1619 Anthoceros agrestis HOM05D005652 ORTHO05D007300 2.6e-36 155.2 81 93.8
SMO147G0269 Selaginella moellendorffii HOM05D005652 ORTHO05D007300 1.0e-35 153.3 91 84.6
Actinidia02604 Actinidia chinensis HOM05D005652 ORTHO05D007300 1.3e-35 152.9 105 79.0
FAN15G0151 Fragaria x ananassa HOM05D000102 ORTHO05D003793 9.3e-34 146.7 107 74.8
Haze_27250 Corylus avellana HOM05D005652 ORTHO05D007300 6.3e-30 134.0 80 78.8
PRCOL_00001930 Prasinoderma coloniale HOM05D005652 ORTHO05D007300 2.4e-29 132.1 82 84.1
AUR62023629 Chenopodium quinoa HOM05D000102 ORTHO05D003793 1.5e-28 129.4 68 95.6
CAN.G947.38 Capsicum annuum HOM05D005652 ORTHO05D007300 4.5e-28 127.9 63 100.0
Rhsim11G0066600 Rhododendron simsii HOM05D005652 ORTHO05D007300 4.5e-28 127.9 63 100.0
Glyma.13G082800 Glycine max HOM05D005652 ORTHO05D007300 6.5e-27 124.0 63 96.8
Oeu026729.1 Olea europaea HOM05D005652 ORTHO05D007300 8.5e-27 123.6 73 90.4
QL09p036189 Quercus lobata HOM05D005652 ORTHO05D007300 8.5e-27 123.6 73 90.4
SalBow7G1395 Salvia bowleyana HOM05D005652 ORTHO05D007300 5.5e-26 120.9 73 94.5
HPP92_028057 Vanilla planifolia HOM05D005652 ORTHO05D007300 5.7e-23 110.9 76 80.3
AUR62004713 Chenopodium quinoa HOM05D005652 ORTHO05D007300 5.9e-20 100.9 61 85.2
Oeu062544.1 Olea europaea HOM05D005652 ORTHO05D007300 1.0e-19 100.1 62 87.1
Cpa.g.sc36.14 Carica papaya HOM05D005652 ORTHO05D007300 1.3e-19 99.8 60 88.3
COL.COLO4_38344 Corchorus olitorius HOM05D005652 ORTHO05D007300 2.9e-19 98.6 50 100.0
BraA02t07181Z Brassica rapa HOM05D005652 ORTHO05D007300 4.2e-18 94.7 63 79.4
Actinidia13808 Actinidia chinensis HOM05D005652 ORTHO05D007300 2.1e-17 92.4 50 92.0
BolC2t09520H Brassica oleracea HOM05D005652 ORTHO05D007300 7.9e-17 90.5 44 95.5
Sed0022236 Sechium edule HOM05D005652 ORTHO05D007300 3.0e-16 88.6 82 62.2
AagrBONN_evm.TU.Sc2ySwM_344.240 Anthoceros agrestis HOM05D005652 ORTHO05D007300 7.2e-10 67.4 39 84.6
TAR381G0412 Trochodendron aralioides HOM05D000102 ORTHO05D003793 1.0e-08 63.5 32 96.9
Dinv20715 Davidia involucrata HOM05D005652 ORTHO05D185765 5.7e-07 57.8 39 76.9
Actinidia34351 Actinidia chinensis HOM05D005652 ORTHO05D057191 4.8e-06 54.7 32 81.2


User provided reference genes

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