Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold24G10482 Striga asiatica HOM05D004728 ORTHO05D002375 2.2e-90 335.9 201 100.0
SGA_v2.0_scaffold52G18993 Striga asiatica HOM05D004728 ORTHO05D002375 6.8e-52 208.0 207 67.6
Migut.C01161 Erythranthe guttata HOM05D004728 ORTHO05D002375 9.5e-38 161.0 206 56.8
MSTRG.1471 Avicennia marina HOM05D004728 ORTHO05D002375 9.2e-33 144.4 179 58.7
MSTRG.25397 Avicennia marina HOM05D004728 ORTHO05D002375 2.5e-30 136.3 177 54.2
Lsat_1_v5_gn_9_73441 Lactuca sativa HOM05D004728 ORTHO05D002375 4.4e-19 99.0 162 38.9
MSTRG.1387 Avicennia marina HOM05D004728 ORTHO05D002375 5.8e-19 98.6 150 50.7
Oeu045990.1 Olea europaea HOM05D004728 ORTHO05D002375 5.8e-19 98.6 188 45.2
Dinv07081 Davidia involucrata HOM05D004728 ORTHO05D002375 7.6e-19 98.2 194 44.8
Lj4A728T44 Lonicera japonica HOM05D004728 ORTHO05D002375 1.6e-16 90.5 141 51.1
MSTRG.1389 Avicennia marina HOM05D004728 ORTHO05D002375 6.0e-16 88.6 142 52.8
DCAR_012878 Daucus carota HOM05D004728 ORTHO05D002375 6.0e-16 88.6 157 47.1
Aqoxy476s002 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 7.8e-16 88.2 120 34.2
Aqoxy6G00703 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 7.8e-16 88.2 120 34.2
ECA247G1585 Erigeron canadensis HOM05D004728 ORTHO05D002375 3.9e-15 85.9 149 33.6
HanXRQChr09g0250741 Helianthus annuus HOM05D004728 ORTHO05D002375 5.1e-15 85.5 145 44.1
RcHm_v2.0_Chr2g0112251 Rosa chinensis HOM05D004728 ORTHO05D002375 1.1e-14 84.3 200 39.0
DCAR_012879 Daucus carota HOM05D004728 ORTHO05D002375 1.5e-14 84.0 155 45.8
Rhsim06G0077100 Rhododendron simsii HOM05D004728 ORTHO05D002375 1.5e-14 84.0 135 49.6
FAN23G2235 Fragaria x ananassa HOM05D004728 ORTHO05D002375 1.9e-14 83.6 128 48.4
FAN19G1066 Fragaria x ananassa HOM05D004728 ORTHO05D002375 3.3e-14 82.8 122 50.8
FAN26G1362 Fragaria x ananassa HOM05D004728 ORTHO05D002375 3.3e-14 82.8 128 47.7
Cfa017900 Carpinus fangiana HOM05D004728 ORTHO05D002375 4.3e-14 82.4 147 46.9
HanXRQChr17g0561041 Helianthus annuus HOM05D004728 ORTHO05D002375 4.3e-14 82.4 132 34.1
FvH4_1g20180 Fragaria vesca HOM05D004728 ORTHO05D002375 5.6e-14 82.0 122 50.8
Peaxi162Scf01184g00014 Petunia axillaris HOM05D004728 ORTHO05D002375 5.6e-14 82.0 157 43.3
Actinidia33119 Actinidia chinensis HOM05D004728 ORTHO05D002375 9.6e-14 81.3 199 37.7
CiPaw.15G045100 Carya illinoinensis HOM05D004728 ORTHO05D002375 9.6e-14 81.3 148 45.3
CiPaw.16G032300 Carya illinoinensis HOM05D004728 ORTHO05D002375 1.3e-13 80.9 119 52.9
CSS0049063 Camellia sinensis var. sinensis HOM05D004728 ORTHO05D002375 2.8e-13 79.7 198 39.9
FAN28G1290 Fragaria x ananassa HOM05D004728 ORTHO05D002375 2.8e-13 79.7 128 46.9
GSVIVG01009093001 Vitis vinifera HOM05D004728 ORTHO05D002375 4.8e-13 79.0 124 47.6
ECA232G1403 Erigeron canadensis HOM05D000469 ORTHO05D000131 1.4e-12 77.4 124 55.6
Lsat_1_v5_gn_9_73380 Lactuca sativa HOM05D004728 ORTHO05D002375 1.4e-12 77.4 189 42.9
MSTRG.25340 Avicennia marina HOM05D004728 ORTHO05D002375 1.8e-12 77.0 158 41.8
CiPaw.15G045000 Carya illinoinensis HOM05D004728 ORTHO05D002375 1.8e-12 77.0 148 43.9
Hma1.2p1_1180F.1_g264660 Hydrangea macrophylla HOM05D004728 ORTHO05D002375 1.8e-12 77.0 110 56.4
SGA_v2.0_scaffold48G17928 Striga asiatica HOM05D004728 ORTHO05D002375 1.8e-12 77.0 131 54.2
Actinidia10350 Actinidia chinensis HOM05D004728 ORTHO05D002375 2.4e-12 76.6 134 47.8
MSTRG.1388 Avicennia marina HOM05D004728 ORTHO05D002375 2.4e-12 76.6 193 40.4
Haze_18251 Corylus avellana HOM05D004728 ORTHO05D002375 2.4e-12 76.6 152 46.1
MD15G1377600 Malus domestica HOM05D004728 ORTHO05D002375 2.4e-12 76.6 153 39.9
PGR042G1769 Punica granatum HOM05D004728 ORTHO05D002375 3.1e-12 76.3 126 52.4
Cfa017899 Carpinus fangiana HOM05D004728 ORTHO05D002375 4.0e-12 75.9 136 48.5
Lsat_1_v5_gn_9_73501 Lactuca sativa HOM05D004728 ORTHO05D002375 5.3e-12 75.5 176 43.8
Atru.chr13.1111 Acer truncatum HOM05D004728 ORTHO05D002375 6.9e-12 75.1 154 42.2
Migut.C01097 Erythranthe guttata HOM05D004728 ORTHO05D002375 6.9e-12 75.1 182 41.2
PSO675G6306 Papaver somniferum HOM05D004728 ORTHO05D002375 9.0e-12 74.7 164 41.5
CiPaw.16G032400 Carya illinoinensis HOM05D004728 ORTHO05D002375 1.2e-11 74.3 121 51.2
MD08G1189800 Malus domestica HOM05D004728 ORTHO05D002375 1.2e-11 74.3 135 40.7
CANSAT01G0157 Cannabis sativa HOM05D004728 ORTHO05D002375 1.5e-11 73.9 120 51.7
Sabra02G0079700 Salix brachista HOM05D004728 ORTHO05D002375 2.0e-11 73.6 165 43.0
SalBow7G1327 Salvia bowleyana HOM05D004728 ORTHO05D002375 2.0e-11 73.6 169 35.5
Actinidia29600 Actinidia chinensis HOM05D004728 ORTHO05D002375 3.4e-11 72.8 216 36.6
Duzib147G1195 Durio zibethinus HOM05D004728 ORTHO05D002375 9.9e-11 71.2 123 51.2
Gorai.009G233200 Gossypium raimondii HOM05D004728 ORTHO05D002375 9.9e-11 71.2 141 44.7
MD15G1317700 Malus domestica HOM05D004728 ORTHO05D002375 9.9e-11 71.2 200 39.5
HanXRQChr17g0556321 Helianthus annuus HOM05D004728 ORTHO05D002375 1.3e-10 70.9 149 33.6
Sc01g0000880 Simmondsia chinensis HOM05D004728 ORTHO05D002375 1.7e-10 70.5 106 51.9
Oeu000784.1 Olea europaea HOM05D004728 ORTHO05D002375 2.2e-10 70.1 187 39.0
Oeu045992.1 Olea europaea HOM05D004728 ORTHO05D002375 2.2e-10 70.1 187 40.6
Lj4A728G42 Lonicera japonica HOM05D004728 ORTHO05D002375 4.9e-10 68.9 137 32.8
Duzib093G2113 Durio zibethinus HOM05D004728 ORTHO05D002375 6.4e-10 68.6 140 44.3
MD15G1317800 Malus domestica HOM05D004728 ORTHO05D002375 6.4e-10 68.6 122 53.3
RcHm_v2.0_Chr2g0112261 Rosa chinensis HOM05D004728 ORTHO05D002375 6.4e-10 68.6 182 39.0
Prupe.6G194100 Prunus persica HOM05D004728 ORTHO05D002375 1.1e-09 67.8 175 39.4
Eucgr.F00382 Eucalyptus grandis HOM05D004728 ORTHO05D002375 2.4e-09 66.6 98 50.0
Lj4A728T43 Lonicera japonica HOM05D004728 ORTHO05D002375 2.4e-09 66.6 116 33.6
Duzib116G0314 Durio zibethinus HOM05D004728 ORTHO05D002375 4.2e-09 65.9 146 47.9
Thecc.08G100900 Theobroma cacao HOM05D004728 ORTHO05D002375 7.1e-09 65.1 128 42.2
AUR62027821 Chenopodium quinoa HOM05D059013 ORTHO05D002375 9.3e-09 64.7 113 34.5
Gorai.005G094700 Gossypium raimondii HOM05D004728 ORTHO05D002375 9.3e-09 64.7 138 39.1
Potri.002G101600 Populus trichocarpa HOM05D004728 ORTHO05D002375 9.3e-09 64.7 182 35.7
Nn1g05467 Nelumbo nucifera HOM05D004728 ORTHO05D002375 1.2e-08 64.3 117 45.3
Gohir.A02G076900 Gossypium hirsutum HOM05D004728 ORTHO05D002375 1.6e-08 63.9 138 38.4
Hund23288 Selenicereus undatus HOM05D004728 ORTHO05D002375 1.6e-08 63.9 147 36.1
HanXRQChr17g0556291 Helianthus annuus HOM05D004728 ORTHO05D002375 2.7e-08 63.2 140 34.3
Thecc.08G100800 Theobroma cacao HOM05D004728 ORTHO05D002375 2.7e-08 63.2 83 56.6
vmacro04704 Vaccinium macrocarpon HOM05D004728 ORTHO05D002375 2.7e-08 63.2 95 56.8
COL.COLO4_11993 Corchorus olitorius HOM05D004728 ORTHO05D002375 3.5e-08 62.8 114 45.6
Gohir.D02G084100 Gossypium hirsutum HOM05D004728 ORTHO05D002375 3.5e-08 62.8 120 40.8
Lj4A95G12 Lonicera japonica HOM05D004728 ORTHO05D002375 3.5e-08 62.8 145 43.4
unitig_0.g2111 Utricularia gibba HOM05D004728 ORTHO05D002375 3.5e-08 62.8 128 41.4
Duzib041G0412 Durio zibethinus HOM05D004728 ORTHO05D002375 4.6e-08 62.4 125 45.6
Hund14099 Selenicereus undatus HOM05D004728 ORTHO05D002375 6.0e-08 62.0 111 50.5
Dinv13237 Davidia involucrata HOM05D004728 ORTHO05D002375 1.0e-07 61.2 153 38.6
Migut.C01096 Erythranthe guttata HOM05D004728 ORTHO05D002375 1.0e-07 61.2 192 32.8
Gohir.A05G223100 Gossypium hirsutum HOM05D004728 ORTHO05D002375 1.0e-07 61.2 125 44.0
Gorai.009G233300 Gossypium raimondii HOM05D004728 ORTHO05D002375 1.0e-07 61.2 113 42.5
Duzib093G1766 Durio zibethinus HOM05D004728 ORTHO05D002375 1.3e-07 60.8 87 55.2
arahy.Tifrunner.gnm1.ann1.30DIRF Arachis hypogaea HOM05D012119 ORTHO05D002375 1.8e-07 60.5 199 30.7
arahy.Tifrunner.gnm1.ann1.9U5DT8 Arachis hypogaea HOM05D012119 ORTHO05D002375 1.8e-07 60.5 153 37.3
ECA247G3235 Erigeron canadensis HOM05D004728 ORTHO05D002375 1.8e-07 60.5 140 42.9
HanXRQChr13g0391971 Helianthus annuus HOM05D004728 ORTHO05D002375 1.8e-07 60.5 114 32.5
MD15G1317500 Malus domestica HOM05D004728 ORTHO05D002375 1.8e-07 60.5 50 52.0
Prupe.6G194000 Prunus persica HOM05D004728 ORTHO05D002375 1.8e-07 60.5 72 63.9
unitig_747.g21502 Utricularia gibba HOM05D004728 ORTHO05D002375 1.8e-07 60.5 127 44.1
Lsat_1_v5_gn_1_2980 Lactuca sativa HOM05D004728 ORTHO05D002375 2.3e-07 60.1 140 46.4
Prupe.1G524300 Prunus persica HOM05D004728 ORTHO05D002375 2.3e-07 60.1 73 38.4
PGSC0003DMG400030843 Solanum tuberosum HOM05D021150 ORTHO05D002375 2.3e-07 60.1 188 37.8
arahy.Tifrunner.gnm1.ann1.69RQXC Arachis hypogaea HOM05D012119 ORTHO05D002375 3.0e-07 59.7 158 34.8
Gohir.D05G225700 Gossypium hirsutum HOM05D004728 ORTHO05D002375 3.0e-07 59.7 102 51.0
Potri.002G101500 Populus trichocarpa HOM05D004728 ORTHO05D002375 3.0e-07 59.7 142 38.7
arahy.Tifrunner.gnm1.ann1.RDUL0C Arachis hypogaea HOM05D012119 ORTHO05D002375 3.9e-07 59.3 150 38.0
Sabra02G0079600 Salix brachista HOM05D004728 ORTHO05D002375 3.9e-07 59.3 151 39.7
Solyc04g074780.4 Solanum lycopersicum HOM05D021150 ORTHO05D002375 3.9e-07 59.3 113 46.0
Gohir.D05G225800 Gossypium hirsutum HOM05D004728 ORTHO05D002375 5.1e-07 58.9 113 38.1
COL.COLO4_11997 Corchorus olitorius HOM05D004728 ORTHO05D002375 8.7e-07 58.2 175 38.9
Lalb_Chr17g0344311 Lupinus albus HOM05D012119 ORTHO05D002375 8.7e-07 58.2 72 37.5
PSO761G0559 Papaver somniferum HOM05D015253 ORTHO05D002375 1.5e-06 57.4 161 24.8
Lj4A728G41 Lonicera japonica HOM05D004728 ORTHO05D002375 1.9e-06 57.0 59 42.4
Prupe.6G194200 Prunus persica HOM05D004728 ORTHO05D002375 1.9e-06 57.0 85 56.5
RcHm_v2.0_Chr7g0238181 Rosa chinensis HOM05D004728 ORTHO05D002375 3.3e-06 56.2 101 48.5
Hund26995 Selenicereus undatus HOM05D004728 ORTHO05D002375 3.3e-06 56.2 117 46.2
TAR376G0070 Trochodendron aralioides HOM05D015253 ORTHO05D002375 3.3e-06 56.2 134 33.6
ECA247G2878 Erigeron canadensis HOM05D004728 ORTHO05D002375 5.6e-06 55.5 133 38.3
HanXRQChr05g0149651 Helianthus annuus HOM05D004728 ORTHO05D002375 5.6e-06 55.5 125 40.0
Rhsim07G0205400 Rhododendron simsii HOM05D004728 ORTHO05D002375 5.6e-06 55.5 117 44.4
FvH4_1g20190 Fragaria vesca HOM05D004728 ORTHO05D002375 7.4e-06 55.1 177 37.9
FAN19G1373 Fragaria x ananassa HOM05D004728 ORTHO05D002375 7.4e-06 55.1 177 37.9
Lsat_1_v5_gn_1_2860 Lactuca sativa HOM05D004728 ORTHO05D002375 7.4e-06 55.1 141 40.4
PSO541G0804 Papaver somniferum HOM05D004728 ORTHO05D002375 7.4e-06 55.1 157 37.6
CANSAT25G2000 Cannabis sativa HOM05D004728 ORTHO05D002375 9.6e-06 54.7 142 40.8
DCAR_003461 Daucus carota HOM05D004728 ORTHO05D002375 9.6e-06 54.7 121 26.4
QL02p002263 Quercus lobata HOM05D004728 ORTHO05D002375 9.6e-06 54.7 92 52.2
Sopen05g029860 Solanum pennellii HOM05D000436 ORTHO05D001944 9.6e-06 54.7 181 36.5


User provided reference genes

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