Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold24G10473 Striga asiatica HOM05D021410 ORTHO05D401290 6.1e-198 694.1 392 100.0
SGA_v2.0_scaffold24G10472 Striga asiatica HOM05D021410 ORTHO05D400622 6.2e-25 119.4 347 33.1
SGA_v2.0_scaffold12G06014 Striga asiatica HOM05D021410 ORTHO05D404235 1.1e-24 118.6 313 34.2
SGA_v2.0_scaffold21G09537 Striga asiatica HOM05D021410 ORTHO05D406040 1.7e-22 111.3 313 34.8
SGA_v2.0_scaffold45G16986 Striga asiatica HOM05D021410 ORTHO05D403289 2.6e-15 87.4 269 33.1
SGA_v2.0_scaffold45G16988 Striga asiatica HOM05D021410 ORTHO05D406317 4.9e-14 83.2 266 31.6
Prupe.1G501000 Prunus persica HOM05D005174 ORTHO05D006784 1.1e-08 65.5 36 86.1
SalBow7G2597 Salvia bowleyana HOM05D005174 ORTHO05D006784 1.4e-08 65.1 36 83.3
Oeu047941.1 Olea europaea HOM05D005174 ORTHO05D006784 3.1e-08 63.9 38 76.3
Lsat_1_v5_gn_4_135460 Lactuca sativa HOM05D005174 ORTHO05D006784 4.0e-08 63.5 36 80.6
Migut.C01145 Erythranthe guttata HOM05D005174 ORTHO05D006784 6.9e-08 62.8 36 77.8
HanXRQChr02g0041151 Helianthus annuus HOM05D005174 ORTHO05D006784 9.0e-08 62.4 36 77.8
SGA_v2.0_scaffold52G18977 Striga asiatica HOM05D005174 ORTHO05D006784 9.0e-08 62.4 36 77.8
DCAR_017401 Daucus carota HOM05D005174 ORTHO05D006784 1.2e-07 62.0 36 80.6
ECA232G2439 Erigeron canadensis HOM05D005174 ORTHO05D006784 1.2e-07 62.0 36 77.8
RcHm_v2.0_Chr6g0295461 Rosa chinensis HOM05D005174 ORTHO05D006784 1.5e-07 61.6 36 80.6
arahy.Tifrunner.gnm1.ann1.Z8FB5F Arachis hypogaea HOM05D005174 ORTHO05D006784 2.0e-07 61.2 37 78.4
TWI56G0960 Tripterygium wilfordii HOM05D005174 ORTHO05D006784 2.0e-07 61.2 36 77.8
Aqoxy6G00176 Aquilegia oxysepala HOM05D005174 ORTHO05D006784 2.6e-07 60.8 36 72.2
arahy.Tifrunner.gnm1.ann1.3YB7R6 Arachis hypogaea HOM05D005174 ORTHO05D006784 2.6e-07 60.8 36 80.6
Lj1g0014313 Lotus japonicus HOM05D005174 ORTHO05D006784 2.6e-07 60.8 36 80.6
Lalb_Chr08g0241531 Lupinus albus HOM05D005174 ORTHO05D006784 2.6e-07 60.8 36 80.6
Peaxi162Scf00051g00623 Petunia axillaris HOM05D005174 ORTHO05D006784 2.6e-07 60.8 36 77.8
Psat5g120840 Pisum sativum HOM05D005174 ORTHO05D006784 2.6e-07 60.8 36 80.6
MSTRG.1457 Avicennia marina HOM05D005174 ORTHO05D006784 3.4e-07 60.5 36 83.3
FvH4_2g26610 Fragaria vesca HOM05D005174 ORTHO05D006784 3.4e-07 60.5 36 77.8
FAN15G0922 Fragaria x ananassa HOM05D005174 ORTHO05D006784 3.4e-07 60.5 36 77.8
FAN20G1758 Fragaria x ananassa HOM05D005174 ORTHO05D006784 3.4e-07 60.5 36 77.8
FAN24G0526 Fragaria x ananassa HOM05D005174 ORTHO05D006784 3.4e-07 60.5 36 77.8
FAN27G1282 Fragaria x ananassa HOM05D005174 ORTHO05D006784 3.4e-07 60.5 36 77.8
Dinv40398 Davidia involucrata HOM05D005174 ORTHO05D006784 4.5e-07 60.1 36 75.0
Gohir.A05G233700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 4.5e-07 60.1 36 80.6
Gohir.D05G236100 Gossypium hirsutum HOM05D005174 ORTHO05D006784 4.5e-07 60.1 36 80.6
Gorai.009G244400 Gossypium raimondii HOM05D005174 ORTHO05D006784 4.5e-07 60.1 36 80.6
Nitab4.5_0000633g0140 Nicotiana tabacum HOM05D005174 ORTHO05D006784 4.5e-07 60.1 36 77.8
Duzib093G0119 Durio zibethinus HOM05D005174 ORTHO05D006784 5.8e-07 59.7 36 77.8
Lj5g0013947 Lotus japonicus HOM05D005174 ORTHO05D006784 5.8e-07 59.7 36 77.8
VMungo1309G0682 Vigna mungo HOM05D005174 ORTHO05D006784 5.8e-07 59.7 36 77.8
CAN.G1396.5 Capsicum annuum HOM05D005174 ORTHO05D006784 7.6e-07 59.3 36 77.8
Ca_13578_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 7.6e-07 59.3 36 77.8
ClCG11G015640 Citrullus lanatus HOM05D005174 ORTHO05D006784 7.6e-07 59.3 36 75.0
Ciclev10001813m.g Citrus clementina HOM05D005174 ORTHO05D006784 7.6e-07 59.3 36 75.0
CsaV3_4G028370 Cucumis sativus L. HOM05D005174 ORTHO05D006784 7.6e-07 59.3 36 75.0
Glyma.06G111200 Glycine max HOM05D005174 ORTHO05D006784 7.6e-07 59.3 36 75.0
Gohir.A02G073700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 7.6e-07 59.3 36 77.8
Gohir.D02G080900 Gossypium hirsutum HOM05D005174 ORTHO05D006784 7.6e-07 59.3 36 77.8
Gorai.005G090400 Gossypium raimondii HOM05D005174 ORTHO05D006784 7.6e-07 59.3 36 77.8
Nitab4.5_0008211g0030 Nicotiana tabacum HOM05D005174 ORTHO05D006784 7.6e-07 59.3 36 77.8
Phvul.009G123200 Phaseolus vulgaris HOM05D005174 ORTHO05D006784 7.6e-07 59.3 36 75.0
Potri.005G175900 Populus trichocarpa HOM05D005174 ORTHO05D006784 7.6e-07 59.3 36 77.8
SEGI_30371 Sequoiadendron giganteum HOM05D005174 ORTHO05D050453 7.6e-07 59.3 40 65.0
Solyc06g060420.3 Solanum lycopersicum HOM05D005174 ORTHO05D006784 7.6e-07 59.3 36 77.8
PGSC0003DMG400017574 Solanum tuberosum HOM05D005174 ORTHO05D006784 7.6e-07 59.3 36 77.8
MD15G1352500 Malus domestica HOM05D005174 ORTHO05D006784 9.9e-07 58.9 36 77.8
Manes.02G161600 Manihot esculenta HOM05D005174 ORTHO05D006784 9.9e-07 58.9 36 75.0
Sopen06g020560 Solanum pennellii HOM05D005174 ORTHO05D006784 9.9e-07 58.9 36 77.8
Nn5g28198 Nelumbo nucifera HOM05D005174 ORTHO05D006784 1.3e-06 58.5 36 75.0
CSS0047682 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 1.7e-06 58.2 36 69.4
CSS0048949 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 1.7e-06 58.2 36 69.4
QL09p035644 Quercus lobata HOM05D005174 ORTHO05D006784 1.7e-06 58.2 36 75.0
Thecc.08G122000 Theobroma cacao HOM05D005174 ORTHO05D006784 1.7e-06 58.2 36 77.8
vmacro00818 Vaccinium macrocarpon HOM05D005174 ORTHO05D006784 1.7e-06 58.2 36 72.2
Duzib116G0013 Durio zibethinus HOM05D005174 ORTHO05D006784 2.2e-06 57.8 36 75.0
Sed0012589 Sechium edule HOM05D005174 ORTHO05D006784 2.2e-06 57.8 36 72.2
CANSAT25G0921 Cannabis sativa HOM05D005174 ORTHO05D006784 2.9e-06 57.4 36 72.2
Sabra05G0132500 Salix brachista HOM05D005174 ORTHO05D006784 3.8e-06 57.0 36 75.0
Sabra15G0076900 Salix brachista HOM05D000453 ORTHO05D000387 3.8e-06 57.0 36 75.0
Haze_00470 Corylus avellana HOM05D005174 ORTHO05D006784 4.9e-06 56.6 36 75.0
TAR381G1686 Trochodendron aralioides HOM05D005174 ORTHO05D006784 4.9e-06 56.6 36 75.0
GSVIVG01008896001 Vitis vinifera HOM05D005174 ORTHO05D006784 4.9e-06 56.6 36 72.2
Psat2g085920 Pisum sativum HOM05D005174 ORTHO05D006784 6.4e-06 56.2 36 75.0
unitig_82.g26987 Utricularia gibba HOM05D005174 ORTHO05D006784 6.4e-06 56.2 36 66.7
CiPaw.05G223800 Carya illinoinensis HOM05D005174 ORTHO05D006784 8.4e-06 55.8 36 72.2
Eucgr.H00450 Eucalyptus grandis HOM05D005174 ORTHO05D006784 8.4e-06 55.8 36 72.2
Eucgr.L02995 Eucalyptus grandis HOM05D005174 ORTHO05D006784 8.4e-06 55.8 36 72.2
Lalb_Chr17g0343851 Lupinus albus HOM05D005174 ORTHO05D006784 8.4e-06 55.8 36 75.0


User provided reference genes

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