Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold24G10465 Striga asiatica HOM05D007246 ORTHO05D009066 1.4e-51 206.1 112 100.0
Migut.C01135 Erythranthe guttata HOM05D007246 ORTHO05D009066 4.8e-31 137.9 104 71.2
Oeu040422.1 Olea europaea HOM05D007246 ORTHO05D009066 1.5e-29 132.9 93 73.1
MSTRG.1448 Avicennia marina HOM05D007246 ORTHO05D009066 1.6e-26 122.9 94 64.9
SalBow7G0738 Salvia bowleyana HOM05D007246 ORTHO05D009066 1.7e-23 112.8 95 61.1
SGA_v2.0_scaffold52G18970 Striga asiatica HOM05D007246 ORTHO05D009066 1.2e-21 106.7 91 62.6
CSS0048322 Camellia sinensis var. sinensis HOM05D007246 ORTHO05D009066 1.3e-20 103.2 92 52.2
unitig_37.g12972 Utricularia gibba HOM05D007246 ORTHO05D009066 1.7e-20 102.8 92 63.0
Lalb_Chr06g0169561 Lupinus albus HOM05D007246 ORTHO05D009066 6.5e-20 100.9 93 54.8
QL09p034990 Quercus lobata HOM05D007246 ORTHO05D009066 1.1e-19 100.1 103 51.5
CANSAT25G3837 Cannabis sativa HOM05D007246 ORTHO05D009066 5.5e-19 97.8 93 53.8
Lsat_1_v5_gn_5_179321 Lactuca sativa HOM05D007246 ORTHO05D009066 5.5e-19 97.8 90 55.6
Aa31LG10G5550 Aethionema arabicum HOM05D007246 ORTHO05D009066 1.6e-18 96.3 88 58.0
Prupe.1G499600 Prunus persica HOM05D007246 ORTHO05D009066 1.6e-18 96.3 93 52.7
Haze_00452 Corylus avellana HOM05D007246 ORTHO05D009066 2.7e-18 95.5 91 53.8
Thecc.08G124300 Theobroma cacao HOM05D007246 ORTHO05D009066 2.7e-18 95.5 84 58.3
FAN27G1944 Fragaria x ananassa HOM05D007246 ORTHO05D009066 3.6e-18 95.1 92 54.3
Manes.18G076600 Manihot esculenta HOM05D007246 ORTHO05D009066 3.6e-18 95.1 89 56.2
Nitab4.5_0001803g0080 Nicotiana tabacum HOM05D007246 ORTHO05D009066 3.6e-18 95.1 87 56.3
Hma1.2p1_0186F.1_g081760 Hydrangea macrophylla HOM05D007246 ORTHO05D009066 4.7e-18 94.7 89 56.2
Lj5g0017876 Lotus japonicus HOM05D007246 ORTHO05D009066 4.7e-18 94.7 93 52.7
Medtr1g073190 Medicago truncatula HOM05D007246 ORTHO05D009066 4.7e-18 94.7 105 48.6
Eucgr.F03786 Eucalyptus grandis HOM05D007246 ORTHO05D009066 6.1e-18 94.4 93 53.8
MD08G1164500 Malus domestica HOM05D007246 ORTHO05D009066 6.1e-18 94.4 91 53.8
RcHm_v2.0_Chr6g0295671 Rosa chinensis HOM05D007246 ORTHO05D009066 6.1e-18 94.4 98 54.1
HanXRQChr13g0407621 Helianthus annuus HOM05D007246 ORTHO05D009066 8.0e-18 94.0 93 52.7
Actinidia02617 Actinidia chinensis HOM05D007246 ORTHO05D009066 1.0e-17 93.6 93 53.8
Cfa016011 Carpinus fangiana HOM05D007246 ORTHO05D009066 1.0e-17 93.6 91 53.8
CsaV3_4G028300 Cucumis sativus L. HOM05D007246 ORTHO05D009066 1.0e-17 93.6 89 52.8
FvH4_2g26810 Fragaria vesca HOM05D007246 ORTHO05D009066 1.0e-17 93.6 111 46.8
Glyma.20G199500 Glycine max HOM05D007246 ORTHO05D009066 1.0e-17 93.6 93 51.6
Atru.chr10.1388 Acer truncatum HOM05D007246 ORTHO05D009066 1.8e-17 92.8 98 53.1
ClCG11G015710 Citrullus lanatus HOM05D007246 ORTHO05D009066 1.8e-17 92.8 89 51.7
Duzib093G0837 Durio zibethinus HOM05D007246 ORTHO05D009066 2.3e-17 92.4 89 53.9
MELO3C010475.2 Cucumis melo HOM05D007246 ORTHO05D009066 3.0e-17 92.0 86 54.7
VMungo0720G2760 Vigna mungo HOM05D003112 ORTHO05D003660 3.0e-17 92.0 92 52.2
Peaxi162Scf00537g00034 Petunia axillaris HOM05D007246 ORTHO05D009066 4.0e-17 91.7 87 55.2
Potri.002G084400 Populus trichocarpa HOM05D007246 ORTHO05D009066 4.0e-17 91.7 89 53.9
CiPaw.05G222500 Carya illinoinensis HOM05D007246 ORTHO05D009066 5.2e-17 91.3 89 51.7
Ciclev10002868m.g Citrus clementina HOM05D007246 ORTHO05D009066 5.2e-17 91.3 83 57.8
Nitab4.5_0001273g0060 Nicotiana tabacum HOM05D007246 ORTHO05D009066 5.2e-17 91.3 86 54.7
Rhsim03G0059000 Rhododendron simsii HOM05D007246 ORTHO05D009066 5.2e-17 91.3 91 50.5
Sopen11g007630 Solanum pennellii HOM05D007246 ORTHO05D009066 5.2e-17 91.3 86 52.3
Sed0023701 Sechium edule HOM05D007246 ORTHO05D009066 6.7e-17 90.9 89 49.4
Solyc11g012890.2 Solanum lycopersicum HOM05D007246 ORTHO05D009066 6.7e-17 90.9 86 52.3
Carub.0001s3729 Capsella rubella HOM05D007246 ORTHO05D009066 8.8e-17 90.5 85 54.1
PGSC0003DMG400000898 Solanum tuberosum HOM05D007246 ORTHO05D009066 8.8e-17 90.5 86 53.5
arahy.Tifrunner.gnm1.ann1.B2XLC5 Arachis hypogaea HOM05D007246 ORTHO05D009066 1.2e-16 90.1 92 53.3
arahy.Tifrunner.gnm1.ann1.HQB0BQ Arachis hypogaea HOM05D007246 ORTHO05D009066 1.2e-16 90.1 92 53.3
Thhalv10011824m.g Eutrema salsugineum HOM05D007246 ORTHO05D009066 2.0e-16 89.4 85 51.8
TPR.G18552 Trifolium pratense HOM05D007246 ORTHO05D009066 2.0e-16 89.4 99 48.5
GSVIVG01008877001 Vitis vinifera HOM05D007246 ORTHO05D009066 2.0e-16 89.4 91 52.7
FAN15G0425 Fragaria x ananassa HOM05D007246 ORTHO05D009066 2.6e-16 89.0 93 49.5
TWI36G0927 Tripterygium wilfordii HOM05D007246 ORTHO05D009066 2.6e-16 89.0 93 50.5
Sp1g35150 Schrenkiella parvula HOM05D007246 ORTHO05D009066 3.3e-16 88.6 85 50.6
Sp1g35170 Schrenkiella parvula HOM05D007246 ORTHO05D009066 5.7e-16 87.8 99 45.5
COL.COLO4_35932 Corchorus olitorius HOM05D007246 ORTHO05D009066 7.5e-16 87.4 89 53.9
A06p47840 Brassica napus HOM05D007246 ORTHO05D009066 9.7e-16 87.0 85 51.8
BraA06t27654Z Brassica rapa HOM05D007246 ORTHO05D009066 9.7e-16 87.0 85 51.8
Cpa.g.sc36.60 Carica papaya HOM05D007246 ORTHO05D009066 9.7e-16 87.0 85 50.6
AT1G48200 Arabidopsis thaliana HOM05D007246 ORTHO05D009066 1.3e-15 86.7 85 51.8
Gorai.010G050000 Gossypium raimondii HOM05D007246 ORTHO05D009066 1.3e-15 86.7 89 50.6
Phvul.L001676 Phaseolus vulgaris HOM05D007246 ORTHO05D009066 1.3e-15 86.7 83 54.2
Psat6g131200 Pisum sativum HOM05D007246 ORTHO05D009066 1.3e-15 86.7 89 50.6
AL1G54790 Arabidopsis lyrata HOM05D007246 ORTHO05D009066 1.7e-15 86.3 86 51.2
BcaC06g34651 Brassica carinata HOM05D007246 ORTHO05D009066 1.7e-15 86.3 85 50.6
C07p26120 Brassica napus HOM05D007246 ORTHO05D009066 1.7e-15 86.3 85 50.6
PGR142G2996 Punica granatum HOM05D007246 ORTHO05D009066 1.7e-15 86.3 91 49.5
SGA_v2.0_scaffold52G18969 Striga asiatica HOM05D007246 ORTHO05D009066 2.2e-15 85.9 91 56.0
BcaC06g31695 Brassica carinata HOM05D007246 ORTHO05D009066 2.8e-15 85.5 85 50.6
BolC7t43138H Brassica oleracea HOM05D007246 ORTHO05D009066 2.8e-15 85.5 85 50.6
Gohir.A06G044000 Gossypium hirsutum HOM05D007246 ORTHO05D009066 2.8e-15 85.5 89 49.4
Ah.05g171160 Amaranthus hybridus HOM05D007246 ORTHO05D009066 3.7e-15 85.1 103 45.6
Nn5g28257 Nelumbo nucifera HOM05D007246 ORTHO05D009066 3.7e-15 85.1 91 49.5
Gohir.D06G044900 Gossypium hirsutum HOM05D007246 ORTHO05D009066 4.8e-15 84.7 87 51.7
Ca_09797_v3 Cicer arietinum L. HOM05D007246 ORTHO05D009066 6.3e-15 84.3 93 45.2
TAR381G0547 Trochodendron aralioides HOM05D007246 ORTHO05D009066 2.4e-14 82.4 91 47.3
EL10Ac1g01002 Beta vulgaris HOM05D007246 ORTHO05D009066 3.1e-14 82.0 93 45.2
ECA248G1302 Erigeron canadensis HOM05D007246 ORTHO05D009066 3.1e-14 82.0 85 49.4
Sc25g0000500 Simmondsia chinensis HOM05D007246 ORTHO05D009066 3.1e-14 82.0 102 45.1
Aqoxy6G00205 Aquilegia oxysepala HOM05D007246 ORTHO05D009066 7.0e-14 80.9 93 45.2
A06p04630 Brassica napus HOM05D007246 ORTHO05D009066 2.0e-13 79.3 87 48.3
THA.LOC104821809 Tarenaya hassleriana HOM05D007246 ORTHO05D009066 2.0e-13 79.3 87 48.3
PSO170G1503 Papaver somniferum HOM05D007246 ORTHO05D009066 4.5e-13 78.2 91 44.0
Hund17288 Selenicereus undatus HOM05D007246 ORTHO05D009066 4.5e-13 78.2 90 45.6
BraA06t23667Z Brassica rapa HOM05D007246 ORTHO05D009066 7.7e-13 77.4 86 48.8
DCAR_003548 Daucus carota HOM05D007246 ORTHO05D009066 1.0e-12 77.0 104 41.3
PSO528G0221 Papaver somniferum HOM05D007246 ORTHO05D009066 1.0e-12 77.0 91 44.0
C06p02690 Brassica napus HOM05D007246 ORTHO05D009066 1.7e-12 76.3 85 47.1
BolC6t35395H Brassica oleracea HOM05D007246 ORTHO05D009066 1.7e-12 76.3 85 47.1
BcaC08g43014 Brassica carinata HOM05D007246 ORTHO05D009066 1.1e-11 73.6 85 45.9
CDE06G1719 Ceratophyllum demersum HOM05D007246 ORTHO05D009066 7.2e-11 70.9 81 48.1
ATR0716G022 Amborella trichopoda HOM05D007246 ORTHO05D009066 9.4e-11 70.5 76 47.4
CARHR037830 Cardamine hirsuta HOM05D007246 ORTHO05D009066 4.7e-10 68.2 70 50.0
Carub.0007s3396 Capsella rubella HOM05D007246 ORTHO05D009066 6.8e-09 64.3 85 47.1
MBI01_g01254_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 1.5e-08 63.2 78 46.2
Lsat_1_v5_gn_4_16480 Lactuca sativa HOM05D007246 ORTHO05D009066 2.6e-08 62.4 43 60.5
MBI01_g01252_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 4.4e-08 61.6 78 44.9
MBI01_g01253_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 4.4e-08 61.6 78 44.9
MBI01_g01255_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 5.7e-08 61.2 78 44.9
BcaB07g33783 Brassica carinata HOM05D007246 ORTHO05D009066 9.8e-08 60.5 82 45.1
BcaB07g33731 Brassica carinata HOM05D007246 ORTHO05D009066 2.4e-06 55.8 50 52.0
BcaB07g33733 Brassica carinata HOM05D007246 ORTHO05D009066 2.4e-06 55.8 50 52.0
HPP92_002815 Vanilla planifolia HOM05D007246 ORTHO05D009066 4.1e-06 55.1 67 43.3
Peaxi162Scf17552g00001 Petunia axillaris HOM05D007246 ORTHO05D009066 9.1e-06 53.9 54 53.7


User provided reference genes

Program Settings