Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold24G10429 Striga asiatica HOM05D001090 ORTHO05D008663 0.0e+00 1526.9 749 100.0
MSTRG.25363 Avicennia marina HOM05D001090 ORTHO05D008663 3.6e-263 911.8 842 57.0
SalBow7G3826 Salvia bowleyana HOM05D001090 ORTHO05D008663 3.1e-235 818.9 844 52.0
SalBow7G3344 Salvia bowleyana HOM05D001090 ORTHO05D008663 1.6e-234 816.6 844 52.0
Migut.C01061 Erythranthe guttata HOM05D001090 ORTHO05D008663 5.5e-232 808.1 842 52.1
Oeu021884.2 Olea europaea HOM05D001090 ORTHO05D008663 4.9e-204 715.3 870 45.7
Dinv14668 Davidia involucrata HOM05D001090 ORTHO05D008663 9.6e-176 621.3 868 41.9
CSS0021561 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D008663 4.5e-173 612.5 866 41.8
Lj7C349G17 Lonicera japonica HOM05D001090 ORTHO05D002687 6.4e-172 608.6 846 41.3
Nitab4.5_0001168g0020 Nicotiana tabacum HOM05D001090 ORTHO05D008663 5.4e-171 605.5 816 40.9
Actinidia29485 Actinidia chinensis HOM05D001090 ORTHO05D008663 3.3e-168 596.3 857 40.5
Nitab4.5_0002045g0020 Nicotiana tabacum HOM05D001090 ORTHO05D008663 1.6e-167 594.0 853 40.0
Sopen11g001050 Solanum pennellii HOM05D001090 ORTHO05D008663 2.0e-165 587.0 854 38.9
PGSC0003DMG401006052 Solanum tuberosum HOM05D001090 ORTHO05D008663 2.6e-165 586.6 854 38.8
Solyc11g005030.3 Solanum lycopersicum HOM05D001090 ORTHO05D008663 2.2e-164 583.6 854 38.6
DCAR_018875 Daucus carota HOM05D001090 ORTHO05D008663 1.1e-163 581.3 855 38.4
unitig_0.g2283 Utricularia gibba HOM05D001090 ORTHO05D008663 6.0e-162 575.5 834 40.6
Rhsim11G0070600 Rhododendron simsii HOM05D001090 ORTHO05D008663 1.3e-161 574.3 855 40.0
Hma1.2p1_1129F.1_g259860 Hydrangea macrophylla HOM05D001090 ORTHO05D008663 1.8e-158 563.9 862 38.5
Peaxi162Scf01003g00015 Petunia axillaris HOM05D001090 ORTHO05D008663 4.5e-157 559.3 852 38.1
QL09p032725 Quercus lobata HOM05D001090 ORTHO05D008663 8.2e-151 538.5 841 37.8
Cfa018121 Carpinus fangiana HOM05D001090 ORTHO05D008663 1.4e-145 521.2 859 36.9
Prupe.1G490500 Prunus persica HOM05D001090 ORTHO05D008663 5.7e-144 515.8 855 37.9
Lj7A347T47 Lonicera japonica HOM05D001090 ORTHO05D008663 1.4e-142 511.1 771 38.8
Manes.18G082000 Manihot esculenta HOM05D001090 ORTHO05D008663 9.1e-142 508.4 844 36.3
RcHm_v2.0_Chr6g0296591 Rosa chinensis HOM05D001090 ORTHO05D008663 2.2e-140 503.8 835 37.4
Ciclev10000294m.g Citrus clementina HOM05D001090 ORTHO05D008663 2.1e-138 497.3 843 36.7
Duzib041G0130 Durio zibethinus HOM05D001090 ORTHO05D008663 1.8e-137 494.2 837 35.4
Potri.019G066500 Populus trichocarpa HOM05D001090 ORTHO05D008663 3.9e-137 493.0 846 35.2
CiPaw.15G032400 Carya illinoinensis HOM05D001090 ORTHO05D008663 5.1e-137 492.7 850 36.8
Thecc.08G132300 Theobroma cacao HOM05D001090 ORTHO05D008663 1.1e-136 491.5 843 35.5
CANSAT56G3793 Cannabis sativa HOM05D001090 ORTHO05D008663 5.7e-136 489.2 849 36.3
Lsat_1_v5_gn_1_9840 Lactuca sativa HOM05D001090 ORTHO05D008663 2.8e-135 486.9 844 35.4
TWI34G0871 Tripterygium wilfordii HOM05D001090 ORTHO05D008663 8.2e-135 485.3 841 35.9
Gorai.005G088100 Gossypium raimondii HOM05D001090 ORTHO05D008663 2.4e-134 483.8 838 35.0
vmacro16445 Vaccinium macrocarpon HOM05D001090 ORTHO05D008663 5.3e-134 482.6 1010 33.9
FAN15G0022 Fragaria x ananassa HOM05D001090 ORTHO05D002687 7.0e-134 482.3 840 36.0
FAN20G0562 Fragaria x ananassa HOM05D001090 ORTHO05D002687 1.5e-133 481.1 835 36.0
FvH4_2g27740 Fragaria vesca HOM05D001090 ORTHO05D008663 2.2e-132 477.2 836 35.6
EL10Ac7g17319 Beta vulgaris HOM05D001090 ORTHO05D008663 2.9e-132 476.9 853 35.4
ECA238G2411 Erigeron canadensis HOM05D001090 ORTHO05D008663 5.0e-132 476.1 849 35.2
FAN27G1391 Fragaria x ananassa HOM05D001090 ORTHO05D002687 8.5e-132 475.3 837 35.8
FAN24G1236 Fragaria x ananassa HOM05D001090 ORTHO05D002687 1.6e-130 471.1 831 35.4
Nn1g08979 Nelumbo nucifera HOM05D001090 ORTHO05D008663 1.6e-130 471.1 873 33.8
MBI03_g28477_MAGBIO Magnolia biondii HOM05D001090 ORTHO05D008663 2.7e-130 470.3 887 33.0
Glyma.06G116800 Glycine max HOM05D001090 ORTHO05D008663 3.6e-130 469.9 840 34.2
Phvul.009G129300 Phaseolus vulgaris HOM05D001090 ORTHO05D008663 4.7e-130 469.5 839 34.6
A06p17720 Brassica napus HOM05D001090 ORTHO05D008663 6.1e-130 469.2 843 34.6
arahy.Tifrunner.gnm1.ann1.NR7S6L Arachis hypogaea HOM05D001090 ORTHO05D008663 1.4e-129 468.0 862 33.6
BraA06t24864Z Brassica rapa HOM05D001090 ORTHO05D008663 3.0e-129 466.8 845 34.4
Lj1g0016545 Lotus japonicus HOM05D001090 ORTHO05D008663 3.9e-129 466.5 857 33.4
Actinidia03422 Actinidia chinensis HOM05D001090 ORTHO05D008663 5.2e-129 466.1 858 35.9
THA.LOC104813679 Tarenaya hassleriana HOM05D001090 ORTHO05D008663 6.7e-129 465.7 837 34.4
Lalb_Chr08g0241151 Lupinus albus HOM05D001090 ORTHO05D008663 2.0e-128 464.2 849 35.2
arahy.Tifrunner.gnm1.ann1.FIZF7Q Arachis hypogaea HOM05D001090 ORTHO05D008663 2.6e-128 463.8 862 33.8
Aqoxy6G00325 Aquilegia oxysepala HOM05D001090 ORTHO05D008663 5.7e-128 462.6 861 34.0
Thhalv10006535m.g Eutrema salsugineum HOM05D001090 ORTHO05D002687 7.4e-128 462.2 835 34.3
Cpa.g.sc64.146 Carica papaya HOM05D001090 ORTHO05D008663 9.7e-128 461.8 801 34.6
Sabra19G0078400 Salix brachista HOM05D001090 ORTHO05D008663 9.7e-128 461.8 846 34.0
TWI32G0149 Tripterygium wilfordii HOM05D001090 ORTHO05D002687 9.7e-128 461.8 847 34.6
Gohir.A02G071600 Gossypium hirsutum HOM05D001090 ORTHO05D008663 4.8e-127 459.5 794 34.6
VMungo1309G2387 Vigna mungo HOM05D001090 ORTHO05D008663 1.8e-126 457.6 839 33.6
PSO017G6856 Papaver somniferum HOM05D001090 ORTHO05D008663 3.1e-126 456.8 904 33.5
Atru.chr13.1551 Acer truncatum HOM05D001090 ORTHO05D008663 5.3e-126 456.1 839 33.7
COL.COLO4_05689 Corchorus olitorius HOM05D001090 ORTHO05D008663 1.6e-125 454.5 852 34.3
AL1G34800 Arabidopsis lyrata HOM05D001090 ORTHO05D008663 1.0e-124 451.8 838 34.7
AT1G21651 Arabidopsis thaliana HOM05D001090 ORTHO05D008663 2.2e-124 450.7 841 35.1
CARHR022000 Cardamine hirsuta HOM05D001090 ORTHO05D002687 2.2e-124 450.7 836 35.0
AT1G21650 Arabidopsis thaliana HOM05D001090 ORTHO05D002687 6.5e-124 449.1 840 35.0
Carub.0001s2108 Capsella rubella HOM05D001090 ORTHO05D008663 8.5e-124 448.7 838 34.2
Hund17320 Selenicereus undatus HOM05D001090 ORTHO05D008663 1.5e-123 448.0 852 35.0
Ah.15g092020 Amaranthus hybridus HOM05D001090 ORTHO05D008663 4.2e-123 446.4 827 35.1
Gohir.D02G078900 Gossypium hirsutum HOM05D001090 ORTHO05D008663 1.2e-122 444.9 795 34.1
BcaB07g32158 Brassica carinata HOM05D001090 ORTHO05D008663 6.1e-122 442.6 843 33.6
C05p20620 Brassica napus HOM05D001090 ORTHO05D008663 1.0e-121 441.8 838 33.8
BolC5t30760H Brassica oleracea HOM05D001090 ORTHO05D008663 1.0e-121 441.8 838 33.8
Sc15g0007530 Simmondsia chinensis HOM05D001090 ORTHO05D008663 2.0e-120 437.6 883 32.8
BcaC05g26082 Brassica carinata HOM05D001090 ORTHO05D008663 2.6e-120 437.2 840 33.6
PSO170G6226 Papaver somniferum HOM05D001090 ORTHO05D008663 1.3e-119 434.9 870 34.1
HanXRQChr02g0041931 Helianthus annuus HOM05D001090 ORTHO05D008663 4.1e-118 429.9 834 33.5
MELO3C002690.2 Cucumis melo HOM05D001090 ORTHO05D008663 2.9e-116 423.7 855 32.6
CsaV3_1G032930 Cucumis sativus L. HOM05D001090 ORTHO05D008663 5.5e-115 419.5 849 32.0
GSVIVG01008814001 Vitis vinifera HOM05D001090 ORTHO05D008663 1.6e-109 401.4 725 34.3
Eucgr.F03832 Eucalyptus grandis HOM05D001090 ORTHO05D008663 3.2e-102 377.1 730 33.0
Aa31LG7G5630 Aethionema arabicum HOM05D001090 ORTHO05D008663 1.7e-100 371.3 837 31.5
Hma1.2p1_0014F.1_g010110 Hydrangea macrophylla HOM05D001090 ORTHO05D008663 2.1e-98 364.4 588 37.4
Psat5g085040 Pisum sativum HOM05D001090 ORTHO05D008663 1.2e-96 358.6 838 29.8
Sed0003425 Sechium edule HOM05D001090 ORTHO05D008663 3.3e-91 340.5 764 30.4
HPP92_013748 Vanilla planifolia HOM05D001090 ORTHO05D008663 1.1e-86 325.5 855 28.7
ATR0584G005 Amborella trichopoda HOM05D001090 ORTHO05D008663 1.4e-86 325.1 864 28.4
Sp1g19180 Schrenkiella parvula HOM05D001090 ORTHO05D008663 2.4e-86 324.3 647 32.0
CAN.G342.10 Capsicum annuum HOM05D001090 ORTHO05D008663 1.6e-82 311.6 586 33.6
Cc10_g12630 Coffea canephora HOM05D001090 ORTHO05D008663 4.7e-82 310.1 444 38.7
Ca_16603_v3 Cicer arietinum L. HOM05D001090 ORTHO05D008663 1.1e-78 298.9 566 32.7
Medtr3g088535 Medicago truncatula HOM05D001090 ORTHO05D008663 3.2e-78 297.4 568 34.3
AUR62040524 Chenopodium quinoa HOM05D001090 ORTHO05D008663 9.2e-78 295.8 818 27.9
TPR.G13463 Trifolium pratense HOM05D001090 ORTHO05D008663 1.7e-76 291.6 600 31.0
SHI09188 Sapria himalayana HOM05D001090 ORTHO05D008663 2.4e-73 281.2 569 32.3
SEGI_33865 Sequoiadendron giganteum HOM05D001090 ORTHO05D008663 2.3e-52 211.5 744 25.9
Zm00001eb337940 Zea mays HOM05D001090 ORTHO05D008663 9.0e-49 199.5 706 25.8
Medtr3g088545 Medicago truncatula HOM05D001090 ORTHO05D008663 4.2e-46 190.7 247 38.9
Ca_16604_v3 Cicer arietinum L. HOM05D001090 ORTHO05D002687 3.0e-44 184.5 223 39.9
Os05g0422300 Oryza sativa ssp. japonica HOM05D001090 ORTHO05D008663 3.3e-43 181.0 700 23.7
CDE02G2378 Ceratophyllum demersum HOM05D001090 ORTHO05D008663 2.8e-42 177.9 254 39.4
SMO011G0047 Selaginella moellendorffii HOM05D001090 ORTHO05D008663 4.1e-41 174.1 807 24.8
Pp3c14_11620 Physcomitrium patens HOM05D001090 ORTHO05D008663 2.2e-34 151.8 898 21.7
Mapoly0020s0076 Marchantia polymorpha HOM05D001090 ORTHO05D008663 1.2e-32 146.0 891 22.3
SHI09187 Sapria himalayana HOM05D001090 ORTHO05D008663 1.2e-32 146.0 255 33.3
Glyma.10G228500 Glycine max HOM05D001090 ORTHO05D008663 2.6e-32 144.8 254 35.8
CSS0004473 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D008663 4.2e-30 137.5 143 53.1
CSS0019679 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D008663 1.4e-28 132.5 143 51.7
AagrBONN_evm.TU.Sc2ySwM_368.1353 Anthoceros agrestis HOM05D001090 ORTHO05D008663 3.9e-20 104.4 249 28.1
CSS0043152 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D008663 9.1e-17 93.2 143 42.0
CSS0030841 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D008663 1.0e-15 89.7 75 60.0
CDE08G1173 Ceratophyllum demersum HOM05D001090 ORTHO05D008663 9.4e-14 83.2 130 35.4
FvH4_5g25800 Fragaria vesca HOM05D000539 ORTHO05D000592 1.4e-12 79.3 139 32.4
Dinv40410 Davidia involucrata HOM05D001090 ORTHO05D008663 2.0e-11 75.5 72 47.2
Dinv40409 Davidia involucrata HOM05D001090 ORTHO05D008663 4.1e-09 67.8 65 50.8
HanXRQChr04g0100141 Helianthus annuus HOM05D000453 ORTHO05D000387 7.0e-09 67.0 193 28.0
CDE02G1192 Ceratophyllum demersum HOM05D006479 ORTHO05D008310 1.2e-08 66.2 208 27.9
Prupe.6G152700 Prunus persica HOM05D006479 ORTHO05D008310 2.0e-08 65.5 209 26.3
Solyc03g111780.1 Solanum lycopersicum HOM05D000453 ORTHO05D000387 2.7e-08 65.1 153 27.5
MD00G1031900 Malus domestica HOM05D006479 ORTHO05D008310 3.5e-08 64.7 214 26.2
Lsat_1_v5_gn_3_23020 Lactuca sativa HOM05D001090 ORTHO05D008663 5.9e-08 63.9 56 50.0
Solyc11g072050.1 Solanum lycopersicum HOM05D006479 ORTHO05D008310 7.7e-08 63.5 194 27.8
Sopen11g029700 Solanum pennellii HOM05D006479 ORTHO05D008310 7.7e-08 63.5 194 28.4
CAN.G280.16 Capsicum annuum HOM05D006479 ORTHO05D008310 1.0e-07 63.2 176 28.4
FAN11G0648 Fragaria x ananassa HOM05D006479 ORTHO05D008310 1.0e-07 63.2 199 27.6
Gohir.A04G129500 Gossypium hirsutum HOM05D000453 ORTHO05D000387 1.3e-07 62.8 182 31.9
Gohir.D04G174600 Gossypium hirsutum HOM05D000453 ORTHO05D000387 1.3e-07 62.8 182 31.9
Gorai.012G164100 Gossypium raimondii HOM05D000453 ORTHO05D000387 1.3e-07 62.8 182 31.9
HanXRQChr09g0271831 Helianthus annuus HOM05D000453 ORTHO05D000387 1.7e-07 62.4 187 28.3
TAR636G1386 Trochodendron aralioides HOM05D006479 ORTHO05D008310 3.8e-07 61.2 214 27.1
Potri.014G077800 Populus trichocarpa HOM05D001335 ORTHO05D001184 6.5e-07 60.5 179 24.0
Aa31sc174G60 Aethionema arabicum HOM05D000453 ORTHO05D000387 8.5e-07 60.1 193 27.5
Sp6g23500 Schrenkiella parvula HOM05D006479 ORTHO05D008310 8.5e-07 60.1 217 23.5
QL01p020440 Quercus lobata HOM05D006479 ORTHO05D008310 1.1e-06 59.7 214 25.2
CsaV3_1G000890 Cucumis sativus L. HOM05D000453 ORTHO05D000387 1.9e-06 58.9 148 25.0
SEGI_29052 Sequoiadendron giganteum HOM05D001090 ORTHO05D008663 1.9e-06 58.9 84 36.9
CANSAT54G0955 Cannabis sativa HOM05D006479 ORTHO05D008310 2.5e-06 58.5 145 28.3
PGR119G1796 Punica granatum HOM05D000453 ORTHO05D000387 2.5e-06 58.5 170 24.7
Sed0016122 Sechium edule HOM05D003550 ORTHO05D004336 2.5e-06 58.5 69 42.0
Carub.0008s1013 Capsella rubella HOM05D000453 ORTHO05D000387 3.2e-06 58.2 192 25.0
Lj9P454T53 Lonicera japonica HOM05D000453 ORTHO05D000387 4.2e-06 57.8 186 23.1
Sabra14G0054600 Salix brachista HOM05D001335 ORTHO05D001184 4.2e-06 57.8 114 28.9
TAR633G1538 Trochodendron aralioides HOM05D006479 ORTHO05D008310 5.5e-06 57.4 236 26.7
ECA232G4971 Erigeron canadensis HOM05D000453 ORTHO05D000387 7.2e-06 57.0 125 29.6
Thecc.01G155400 Theobroma cacao HOM05D001335 ORTHO05D001184 7.2e-06 57.0 185 25.9
DCAR_002128 Daucus carota HOM05D006479 ORTHO05D008310 9.4e-06 56.6 176 26.1
Gorai.011G127400 Gossypium raimondii HOM05D001335 ORTHO05D001184 9.4e-06 56.6 110 36.4
Oeu044595.1 Olea europaea HOM05D000453 ORTHO05D000387 9.4e-06 56.6 151 24.5


User provided reference genes

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