Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold24G10414 Striga asiatica HOM05D000908 ORTHO05D403335 2.1e-123 445.7 216 100.0
SGA_v2.0_scaffold117G32316 Striga asiatica HOM05D000908 ORTHO05D406368 1.8e-90 336.3 220 78.6
SGA_v2.0_scaffold2G01021 Striga asiatica HOM05D000908 ORTHO05D404151 5.4e-79 298.1 170 87.1
SGA_v2.0_scaffold12G06182 Striga asiatica HOM05D000908 ORTHO05D004347 9.0e-26 121.3 58 98.3
SGA_v2.0_scaffold120G32855 Striga asiatica HOM05D000908 ORTHO05D000789 1.6e-19 100.5 58 81.0
SGA_v2.0_scaffold136G34976 Striga asiatica HOM05D000908 ORTHO05D400566 1.8e-18 97.1 54 85.2
Ciclev10019939m.g Citrus clementina HOM05D000908 ORTHO05D000789 2.1e-11 73.6 59 55.9
AUR62007483 Chenopodium quinoa HOM05D000908 ORTHO05D000789 3.7e-11 72.8 60 55.0
Dinv39111 Davidia involucrata HOM05D000908 ORTHO05D000789 3.7e-11 72.8 94 45.7
DCAR_027795 Daucus carota HOM05D000908 ORTHO05D000789 4.8e-11 72.4 59 61.0
Cfa012767 Carpinus fangiana HOM05D000908 ORTHO05D000789 8.2e-11 71.6 63 52.4
CANSAT80G0463 Cannabis sativa HOM05D000908 ORTHO05D000789 1.8e-10 70.5 59 59.3
Cfa012770 Carpinus fangiana HOM05D000908 ORTHO05D000789 2.4e-10 70.1 63 52.4
Haze_07863 Corylus avellana HOM05D000908 ORTHO05D000789 2.4e-10 70.1 63 52.4
FAN18G1498 Fragaria x ananassa HOM05D000908 ORTHO05D000789 2.4e-10 70.1 65 60.0
AUR62039939 Chenopodium quinoa HOM05D000908 ORTHO05D000789 3.1e-10 69.7 60 55.0
Hma1.2p1_1720F.1_g299290 Hydrangea macrophylla HOM05D000908 ORTHO05D000789 3.1e-10 69.7 142 34.5
RcHm_v2.0_Chr7g0202561 Rosa chinensis HOM05D000908 ORTHO05D000789 3.1e-10 69.7 83 50.6
FvH4_5g36530 Fragaria vesca HOM05D000908 ORTHO05D000789 5.3e-10 68.9 59 54.2
FvH4_5g00210 Fragaria vesca HOM05D000908 ORTHO05D000789 6.9e-10 68.6 64 59.4
FAN08G2898 Fragaria x ananassa HOM05D000908 ORTHO05D000789 6.9e-10 68.6 64 59.4
FAN13G0181 Fragaria x ananassa HOM05D000908 ORTHO05D000789 6.9e-10 68.6 64 59.4
Prupe.5G074900 Prunus persica HOM05D000908 ORTHO05D000789 6.9e-10 68.6 59 52.5
EL10Ac5g13017 Beta vulgaris HOM05D000908 ORTHO05D000789 9.0e-10 68.2 59 54.2
Haze_07865 Corylus avellana HOM05D000908 ORTHO05D000789 9.0e-10 68.2 60 51.7
RcHm_v2.0_Chr7g0202451 Rosa chinensis HOM05D000908 ORTHO05D000789 9.0e-10 68.2 61 57.4
Atru.chr9.1368 Acer truncatum HOM05D000908 ORTHO05D000789 1.2e-09 67.8 59 54.2
FvH4_5g36860 Fragaria vesca HOM05D000908 ORTHO05D000789 1.2e-09 67.8 59 52.5
Sc22g0000730 Simmondsia chinensis HOM05D000908 ORTHO05D000789 1.5e-09 67.4 60 53.3
MSTRG.25536 Avicennia marina HOM05D000908 ORTHO05D000789 2.0e-09 67.0 69 55.1
SalBow6G0882 Salvia bowleyana HOM05D000908 ORTHO05D000789 3.4e-09 66.2 68 51.5
SalBow6G2921 Salvia bowleyana HOM05D000908 ORTHO05D000789 3.4e-09 66.2 68 51.5
Hund09325 Selenicereus undatus HOM05D000908 ORTHO05D000789 3.4e-09 66.2 60 53.3
Hund11583 Selenicereus undatus HOM05D000908 ORTHO05D000789 3.4e-09 66.2 60 53.3
GSVIVG01004788001 Vitis vinifera HOM05D000908 ORTHO05D000789 3.4e-09 66.2 60 48.3
Ah.12g056540 Amaranthus hybridus HOM05D000908 ORTHO05D000789 4.5e-09 65.9 60 48.3
RcHm_v2.0_Chr7g0202471 Rosa chinensis HOM05D000908 ORTHO05D000789 4.5e-09 65.9 61 59.0
unitig_22.g6243 Utricularia gibba HOM05D000908 ORTHO05D000789 4.5e-09 65.9 67 46.3
GSVIVG01001284001 Vitis vinifera HOM05D000908 ORTHO05D000789 4.5e-09 65.9 60 48.3
Lj8C258T4 Lonicera japonica HOM05D000908 ORTHO05D000789 5.9e-09 65.5 60 53.3
Cpa.g.sc29.133 Carica papaya HOM05D000908 ORTHO05D000789 7.6e-09 65.1 81 50.6
Migut.A00811 Erythranthe guttata HOM05D000908 ORTHO05D000789 7.6e-09 65.1 71 50.7
MBI04_g37590_MAGBIO Magnolia biondii HOM05D000908 ORTHO05D000789 1.0e-08 64.7 84 44.0
RcHm_v2.0_Chr7g0202461 Rosa chinensis HOM05D000908 ORTHO05D000789 1.0e-08 64.7 60 58.3
CiPaw.12G107300 Carya illinoinensis HOM05D000908 ORTHO05D000789 1.3e-08 64.3 59 52.5
FvH4_5g36500 Fragaria vesca HOM05D000908 ORTHO05D000789 1.3e-08 64.3 59 50.8
RcHm_v2.0_Chr7g0202581 Rosa chinensis HOM05D000908 ORTHO05D000789 1.3e-08 64.3 58 51.7
CSS0001610 Camellia sinensis var. sinensis HOM05D000908 ORTHO05D000789 2.2e-08 63.5 75 48.0
CiPaw.12G107400 Carya illinoinensis HOM05D000908 ORTHO05D000789 2.2e-08 63.5 59 49.2
FAN04G0233 Fragaria x ananassa HOM05D000908 ORTHO05D000789 2.2e-08 63.5 59 52.5
Manes.02G036400 Manihot esculenta HOM05D000908 ORTHO05D000789 2.2e-08 63.5 93 43.0
AUR62015415 Chenopodium quinoa HOM05D000908 ORTHO05D000789 2.9e-08 63.2 176 30.7
Actinidia27456 Actinidia chinensis HOM05D000908 ORTHO05D000789 3.8e-08 62.8 59 52.5
SHI03179 Sapria himalayana HOM05D000908 ORTHO05D000789 3.8e-08 62.8 62 48.4
Prupe.5G074800 Prunus persica HOM05D000908 ORTHO05D000789 5.0e-08 62.4 121 33.9
HanXRQChr13g0394941 Helianthus annuus HOM05D000908 ORTHO05D000789 6.5e-08 62.0 60 55.0
Lsat_1_v5_gn_6_1841 Lactuca sativa HOM05D000908 ORTHO05D000789 6.5e-08 62.0 76 44.7
Lj2g0017589 Lotus japonicus HOM05D000908 ORTHO05D000789 6.5e-08 62.0 57 49.1
SMO145G0079 Selaginella moellendorffii HOM05D000908 ORTHO05D000789 8.5e-08 61.6 158 34.2
vmacro14101 Vaccinium macrocarpon HOM05D000908 ORTHO05D000789 8.5e-08 61.6 61 52.5
FvH4_5g00230 Fragaria vesca HOM05D000908 ORTHO05D000789 1.1e-07 61.2 58 53.4
FAN18G1340 Fragaria x ananassa HOM05D000908 ORTHO05D000789 1.1e-07 61.2 58 53.4
FAN18G3629 Fragaria x ananassa HOM05D000908 ORTHO05D000789 1.1e-07 61.2 121 38.8
Potri.001G121100 Populus trichocarpa HOM05D000908 ORTHO05D000789 1.1e-07 61.2 113 40.7
RcHm_v2.0_Chr7g0202571 Rosa chinensis HOM05D000908 ORTHO05D000009 1.1e-07 61.2 60 56.7
Thecc.03G256100 Theobroma cacao HOM05D000908 ORTHO05D000789 1.1e-07 61.2 76 43.4
EL10Ac3g05583 Beta vulgaris HOM05D000908 ORTHO05D000789 1.4e-07 60.8 144 33.3
CiPaw.11G151000 Carya illinoinensis HOM05D000908 ORTHO05D000789 1.4e-07 60.8 64 50.0
FvH4_5g00220 Fragaria vesca HOM05D000908 ORTHO05D000789 1.4e-07 60.8 58 51.7
FAN13G1543 Fragaria x ananassa HOM05D000908 ORTHO05D000789 1.4e-07 60.8 56 50.0
Sabra01G0093300 Salix brachista HOM05D000908 ORTHO05D000789 1.4e-07 60.8 133 37.6
Ah.13g072930 Amaranthus hybridus HOM05D000908 ORTHO05D000789 1.9e-07 60.5 119 34.5
AUR62015414 Chenopodium quinoa HOM05D000908 ORTHO05D000789 1.9e-07 60.5 120 35.8
Manes.01G077100 Manihot esculenta HOM05D000908 ORTHO05D000789 1.9e-07 60.5 105 41.9
Sp2g02030 Schrenkiella parvula HOM05D000908 ORTHO05D000789 1.9e-07 60.5 139 33.1
SMO139G0146 Selaginella moellendorffii HOM05D000908 ORTHO05D000789 1.9e-07 60.5 93 43.0
AUR62002282 Chenopodium quinoa HOM05D000908 ORTHO05D000789 2.5e-07 60.1 120 35.0
Nitab4.5_0001292g0020 Nicotiana tabacum HOM05D000908 ORTHO05D000789 2.5e-07 60.1 64 51.6
GSVIVG01001281001 Vitis vinifera HOM05D000908 ORTHO05D000789 2.5e-07 60.1 60 50.0
Cc08_g12870 Coffea canephora HOM05D000908 ORTHO05D000789 3.2e-07 59.7 127 37.8
Gohir.D03G161300 Gossypium hirsutum HOM05D000908 ORTHO05D000789 3.2e-07 59.7 105 39.0
Nitab4.5_0003531g0030 Nicotiana tabacum HOM05D000908 ORTHO05D000789 3.2e-07 59.7 80 45.0
PSO339G5077 Papaver somniferum HOM05D000908 ORTHO05D000789 3.2e-07 59.7 110 36.4
arahy.Tifrunner.gnm1.ann1.KU1RQE Arachis hypogaea HOM05D000908 ORTHO05D000789 4.2e-07 59.3 64 46.9
PGR042G0436 Punica granatum HOM05D000908 ORTHO05D000789 4.2e-07 59.3 62 48.4
EL10Ac3g05582 Beta vulgaris HOM05D000908 ORTHO05D000789 5.5e-07 58.9 67 50.7
COL.COLO4_37204 Corchorus olitorius HOM05D000908 ORTHO05D000789 5.5e-07 58.9 79 41.8
Gohir.A03G009500 Gossypium hirsutum HOM05D000908 ORTHO05D000789 5.5e-07 58.9 105 39.0
Gorai.003G170000 Gossypium raimondii HOM05D000908 ORTHO05D000789 5.5e-07 58.9 105 39.0
TAR636G0758 Trochodendron aralioides HOM05D000908 ORTHO05D000789 5.5e-07 58.9 87 42.5
Atru.chr9.1369 Acer truncatum HOM05D000908 ORTHO05D000789 7.2e-07 58.5 82 40.2
AUR62002281 Chenopodium quinoa HOM05D000908 ORTHO05D000789 7.2e-07 58.5 173 28.9
COL.COLO4_37205 Corchorus olitorius HOM05D000908 ORTHO05D000789 7.2e-07 58.5 75 42.7
GSVIVG01001282001 Vitis vinifera HOM05D000908 ORTHO05D000789 7.2e-07 58.5 82 43.9
AT1G62560 Arabidopsis thaliana HOM05D000908 ORTHO05D000789 9.3e-07 58.2 124 36.3
CAN.G1037.2 Capsicum annuum HOM05D000908 ORTHO05D000789 9.3e-07 58.2 62 48.4
Thhalv10007582m.g Eutrema salsugineum HOM05D000908 ORTHO05D000789 9.3e-07 58.2 122 35.2
Aqoxy7G00731 Aquilegia oxysepala HOM05D000908 ORTHO05D000789 1.2e-06 57.8 62 48.4
Zm00001eb023110 Zea mays HOM05D000908 ORTHO05D000789 1.2e-06 57.8 80 42.5
Medtr5g012130 Medicago truncatula HOM05D000908 ORTHO05D000789 1.6e-06 57.4 96 37.5
TWI81G1015 Tripterygium wilfordii HOM05D000908 ORTHO05D000789 1.6e-06 57.4 59 54.2
AL2G13250 Arabidopsis lyrata HOM05D000908 ORTHO05D000789 2.1e-06 57.0 148 33.8
Solyc06g060610.2 Solanum lycopersicum HOM05D000908 ORTHO05D000789 2.1e-06 57.0 60 51.7
Sopen06g020740 Solanum pennellii HOM05D000908 ORTHO05D000789 2.1e-06 57.0 60 51.7
PGSC0003DMG400013808 Solanum tuberosum HOM05D000908 ORTHO05D000789 2.1e-06 57.0 60 51.7
Aa31LG1G2570 Aethionema arabicum HOM05D000908 ORTHO05D000789 2.7e-06 56.6 130 34.6
arahy.Tifrunner.gnm1.ann1.1FIS1V Arachis hypogaea HOM05D000908 ORTHO05D000789 2.7e-06 56.6 64 45.3
Peaxi162Scf00319g00113 Petunia axillaris HOM05D000908 ORTHO05D000789 2.7e-06 56.6 61 47.5
TWI81G0425 Tripterygium wilfordii HOM05D000908 ORTHO05D000789 2.7e-06 56.6 102 42.2
ATR0681G040 Amborella trichopoda HOM05D000908 ORTHO05D000789 3.6e-06 56.2 59 45.8
PGR042G1094 Punica granatum HOM05D000908 ORTHO05D000789 3.6e-06 56.2 62 51.6
HPP92_017526 Vanilla planifolia HOM05D000908 ORTHO05D000789 3.6e-06 56.2 131 31.3
GSVIVG01001280001 Vitis vinifera HOM05D000908 ORTHO05D000789 3.6e-06 56.2 58 43.1
AL1G23410 Arabidopsis lyrata HOM05D000908 ORTHO05D000789 4.6e-06 55.8 58 51.7
CAN.G474.8 Capsicum annuum HOM05D000908 ORTHO05D000789 4.6e-06 55.8 61 49.2
MD06G1063100 Malus domestica HOM05D000908 ORTHO05D000789 4.6e-06 55.8 103 35.9
A09p64070 Brassica napus HOM05D000908 ORTHO05D000789 6.1e-06 55.5 58 50.0
BraA09t41753Z Brassica rapa HOM05D000908 ORTHO05D000789 6.1e-06 55.5 58 50.0
COL.COLO4_37203 Corchorus olitorius HOM05D000908 ORTHO05D000789 6.1e-06 55.5 74 43.2
Eucgr.E00456 Eucalyptus grandis HOM05D000908 ORTHO05D000789 6.1e-06 55.5 68 47.1
AT1G63370 Arabidopsis thaliana HOM05D000908 ORTHO05D000789 7.9e-06 55.1 146 34.2
BcaC07g41728 Brassica carinata HOM05D000908 ORTHO05D000789 7.9e-06 55.1 58 50.0
BcaNung05494 Brassica carinata HOM05D000908 ORTHO05D000789 7.9e-06 55.1 58 50.0
Lalb_Chr16g0379701 Lupinus albus HOM05D000908 ORTHO05D000789 7.9e-06 55.1 60 43.3
Nitab4.5_0014042g0010 Nicotiana tabacum HOM05D000908 ORTHO05D000789 7.9e-06 55.1 67 40.3


User provided reference genes

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