Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold24G10395 Striga asiatica HOM05D002903 ORTHO05D003066 8.6e-105 383.6 192 100.0
SGA_v2.0_scaffold48G17917 Striga asiatica HOM05D002903 ORTHO05D003066 4.1e-38 162.2 194 52.1
MSTRG.25346 Avicennia marina HOM05D002903 ORTHO05D003066 2.7e-26 122.9 161 47.2
MSTRG.1394 Avicennia marina HOM05D002903 ORTHO05D003066 8.0e-26 121.3 159 48.4
SalBow7G1710 Salvia bowleyana HOM05D002903 ORTHO05D003066 4.4e-24 115.5 152 50.0
Oeu047153.1 Olea europaea HOM05D002903 ORTHO05D003066 1.1e-22 110.9 157 45.2
Oeu045975.1 Olea europaea HOM05D002903 ORTHO05D003066 2.4e-22 109.8 182 44.0
TWI60G0469 Tripterygium wilfordii HOM05D002903 ORTHO05D003066 1.0e-20 104.4 164 43.9
Dinv25773 Davidia involucrata HOM05D002903 ORTHO05D003066 2.9e-20 102.8 167 43.7
Lsat_1_v5_gn_1_9061 Lactuca sativa HOM05D002903 ORTHO05D003066 1.5e-19 100.5 184 38.6
Dinv41151 Davidia involucrata HOM05D002903 ORTHO05D003066 1.9e-19 100.1 163 42.9
Migut.N03253 Erythranthe guttata HOM05D002903 ORTHO05D003066 1.2e-18 97.4 176 41.5
Cfa018400 Carpinus fangiana HOM05D002903 ORTHO05D003066 3.6e-18 95.9 164 40.9
Haze_17666 Corylus avellana HOM05D002903 ORTHO05D003066 3.6e-18 95.9 164 40.2
Hma1.2p1_1125F.1_g259580 Hydrangea macrophylla HOM05D002903 ORTHO05D003066 1.0e-17 94.4 156 47.4
TWI32G0321 Tripterygium wilfordii HOM05D002903 ORTHO05D003066 1.0e-17 94.4 163 41.7
HanXRQChr10g0309091 Helianthus annuus HOM05D002903 ORTHO05D003066 5.2e-17 92.0 161 41.0
Lj1g0027406 Lotus japonicus HOM05D002903 ORTHO05D003066 8.9e-17 91.3 173 39.3
SalBow6G1573 Salvia bowleyana HOM05D002903 ORTHO05D003066 1.2e-16 90.9 163 41.7
Glyma.14G158800 Glycine max HOM05D002903 ORTHO05D003066 2.0e-16 90.1 182 37.4
Lj7P356T43 Lonicera japonica HOM05D002903 ORTHO05D003066 3.4e-16 89.4 168 41.7
Solyc06g059860.3 Solanum lycopersicum HOM05D002903 ORTHO05D003066 3.4e-16 89.4 152 42.8
RcHm_v2.0_Chr6g0278041 Rosa chinensis HOM05D002903 ORTHO05D003066 4.4e-16 89.0 154 43.5
Sabra05G0141500 Salix brachista HOM05D002903 ORTHO05D003066 4.4e-16 89.0 166 39.8
Glyma.13G036100 Glycine max HOM05D002903 ORTHO05D003066 5.7e-16 88.6 166 39.2
Nitab4.5_0005642g0020 Nicotiana tabacum HOM05D002903 ORTHO05D003066 5.7e-16 88.6 162 39.5
SGA_v2.0_scaffold25G11145 Striga asiatica HOM05D002903 ORTHO05D003066 9.8e-16 87.8 165 42.4
CSS0044801 Camellia sinensis var. sinensis HOM05D002903 ORTHO05D003066 1.7e-15 87.0 157 41.4
Phvul.001G065100 Phaseolus vulgaris HOM05D002903 ORTHO05D003066 1.7e-15 87.0 192 36.5
Gohir.D02G076000 Gossypium hirsutum HOM05D002903 ORTHO05D003066 2.2e-15 86.7 178 38.8
Gorai.005G085300 Gossypium raimondii HOM05D002903 ORTHO05D003066 2.2e-15 86.7 178 38.8
VMungo0647G0886 Vigna mungo HOM05D002903 ORTHO05D003066 2.2e-15 86.7 183 36.1
Solyc08g080860.4 Solanum lycopersicum HOM05D002903 ORTHO05D003066 2.8e-15 86.3 144 40.3
Sopen06g019940 Solanum pennellii HOM05D002903 ORTHO05D003066 2.8e-15 86.3 152 42.8
PGSC0003DMG400012217 Solanum tuberosum HOM05D002903 ORTHO05D003066 2.8e-15 86.3 157 40.1
PGSC0003DMG400013037 Solanum tuberosum HOM05D002903 ORTHO05D003066 3.7e-15 85.9 153 41.8
Glyma.06G119800 Glycine max HOM05D002903 ORTHO05D003066 6.3e-15 85.1 168 41.7
QL09p029695 Quercus lobata HOM05D002903 ORTHO05D003066 6.3e-15 85.1 147 38.1
BcaB02g07090 Brassica carinata HOM05D002903 ORTHO05D003066 1.1e-14 84.3 135 43.0
CiPaw.15G024600 Carya illinoinensis HOM05D002903 ORTHO05D003066 1.1e-14 84.3 167 41.3
Oeu001551.1 Olea europaea HOM05D002903 ORTHO05D003066 1.1e-14 84.3 162 39.5
Sopen08g029160 Solanum pennellii HOM05D002903 ORTHO05D003066 1.4e-14 84.0 145 40.0
Actinidia03429 Actinidia chinensis HOM05D002903 ORTHO05D003066 1.8e-14 83.6 134 41.8
Nn5g28499 Nelumbo nucifera HOM05D002903 ORTHO05D003066 1.8e-14 83.6 174 34.5
TWI34G0043 Tripterygium wilfordii HOM05D002903 ORTHO05D003066 1.8e-14 83.6 139 38.8
FvH4_2g15290 Fragaria vesca HOM05D002903 ORTHO05D003066 2.4e-14 83.2 156 39.7
Potri.002G075400 Populus trichocarpa HOM05D002903 ORTHO05D003066 2.4e-14 83.2 162 35.8
PGR042G1875 Punica granatum HOM05D002903 ORTHO05D003066 2.4e-14 83.2 140 42.1
FAN20G1459 Fragaria x ananassa HOM05D002903 ORTHO05D003066 3.1e-14 82.8 155 38.7
vmacro00875 Vaccinium macrocarpon HOM05D002903 ORTHO05D003066 3.1e-14 82.8 148 38.5
TPR.G30561 Trifolium pratense HOM05D002903 ORTHO05D003066 4.1e-14 82.4 174 36.8
Peaxi162Scf00119g00051 Petunia axillaris HOM05D002903 ORTHO05D003066 5.4e-14 82.0 74 60.8
Phvul.009G132400 Phaseolus vulgaris HOM05D002903 ORTHO05D003066 5.4e-14 82.0 158 39.2
Sabra02G0058900 Salix brachista HOM05D002903 ORTHO05D003066 5.4e-14 82.0 160 35.0
Eucgr.F02770 Eucalyptus grandis HOM05D002903 ORTHO05D003066 7.0e-14 81.6 157 39.5
Glyma.04G243500 Glycine max HOM05D002903 ORTHO05D003066 7.0e-14 81.6 166 38.0
MSTRG.24179 Avicennia marina HOM05D002903 ORTHO05D003066 9.2e-14 81.3 167 40.7
CARHR021780 Cardamine hirsuta HOM05D002903 ORTHO05D003066 9.2e-14 81.3 158 39.9
Manes.02G172300 Manihot esculenta HOM05D002903 ORTHO05D003066 9.2e-14 81.3 164 37.2
Nitab4.5_0008281g0010 Nicotiana tabacum HOM05D002903 ORTHO05D003066 9.2e-14 81.3 168 37.5
FAN24G3523 Fragaria x ananassa HOM05D002903 ORTHO05D003066 1.2e-13 80.9 155 38.1
Thecc.08G137400 Theobroma cacao HOM05D002903 ORTHO05D003066 1.2e-13 80.9 177 37.3
Cc10_g13350 Coffea canephora HOM05D002903 ORTHO05D003066 1.6e-13 80.5 168 40.5
THA.LOC104813698 Tarenaya hassleriana HOM05D002903 ORTHO05D003066 1.6e-13 80.5 133 42.9
PGR044G0841 Punica granatum HOM05D002903 ORTHO05D003066 2.7e-13 79.7 153 36.6
C06p31570 Brassica napus HOM05D000744 ORTHO05D000332 3.5e-13 79.3 150 42.0
Lalb_Chr08g0240931 Lupinus albus HOM05D002903 ORTHO05D003066 3.5e-13 79.3 180 36.7
VMungo1309G2413 Vigna mungo HOM05D002903 ORTHO05D003066 3.5e-13 79.3 174 38.5
Gohir.A02G069300 Gossypium hirsutum HOM05D002903 ORTHO05D003066 4.5e-13 79.0 152 39.5
BraA07t31783Z Brassica rapa HOM05D002903 ORTHO05D003066 5.9e-13 78.6 137 40.9
BcaC08g45488 Brassica carinata HOM05D000744 ORTHO05D000332 7.8e-13 78.2 150 41.3
BolC6t38286H Brassica oleracea HOM05D002903 ORTHO05D003066 7.8e-13 78.2 150 41.3
FAN27G1654 Fragaria x ananassa HOM05D002903 ORTHO05D003066 7.8e-13 78.2 151 36.4
Manes.18G084700 Manihot esculenta HOM05D002903 ORTHO05D003066 7.8e-13 78.2 159 37.1
ClCG08G006250 Citrullus lanatus HOM05D002903 ORTHO05D003066 1.3e-12 77.4 160 43.8
Duzib041G0628 Durio zibethinus HOM05D002903 ORTHO05D003066 1.3e-12 77.4 164 37.2
FAN15G2216 Fragaria x ananassa HOM05D002903 ORTHO05D003066 1.3e-12 77.4 155 38.1
Nn1g06302 Nelumbo nucifera HOM05D002903 ORTHO05D003066 1.3e-12 77.4 166 39.8
Nitab4.5_0002270g0020 Nicotiana tabacum HOM05D002903 ORTHO05D003066 1.3e-12 77.4 176 33.0
Peaxi162Scf00505g00053 Petunia axillaris HOM05D002903 ORTHO05D003066 1.3e-12 77.4 164 37.8
Gorai.013G109100 Gossypium raimondii HOM05D002903 ORTHO05D003066 1.7e-12 77.0 157 40.1
AL2G37140 Arabidopsis lyrata HOM05D002903 ORTHO05D003066 2.9e-12 76.3 135 41.5
AL402U10010 Arabidopsis lyrata HOM05D002903 ORTHO05D003066 2.9e-12 76.3 135 41.5
Gohir.A02G112000 Gossypium hirsutum HOM05D002903 ORTHO05D003066 2.9e-12 76.3 157 39.5
Aqoxy5G02305 Aquilegia oxysepala HOM05D002903 ORTHO05D003066 3.8e-12 75.9 165 40.0
MELO3C008433.2 Cucumis melo HOM05D002903 ORTHO05D003066 3.8e-12 75.9 158 39.2
MD10G1007900 Malus domestica HOM05D002903 ORTHO05D003066 3.8e-12 75.9 167 35.9
CSS0044741 Camellia sinensis var. sinensis HOM05D002903 ORTHO05D003066 5.0e-12 75.5 184 33.7
CARHR070490 Cardamine hirsuta HOM05D002903 ORTHO05D003066 5.0e-12 75.5 135 41.5
Medtr1g029550 Medicago truncatula HOM05D002903 ORTHO05D003066 5.0e-12 75.5 155 39.4
Rhsim11G0074400 Rhododendron simsii HOM05D002903 ORTHO05D003066 5.0e-12 75.5 66 59.1
TAR376G0422 Trochodendron aralioides HOM05D002903 ORTHO05D003066 5.0e-12 75.5 163 38.0
CsaV3_6G031200 Cucumis sativus L. HOM05D002903 ORTHO05D003066 6.6e-12 75.1 159 39.6
Lalb_Chr10g0101441 Lupinus albus HOM05D002903 ORTHO05D003066 6.6e-12 75.1 177 32.8
Ca_16630_v3 Cicer arietinum L. HOM05D002903 ORTHO05D003066 8.6e-12 74.7 120 41.7
Aqoxy1G01928 Aquilegia oxysepala HOM05D002903 ORTHO05D003066 1.1e-11 74.3 104 51.0
A07p28150 Brassica napus HOM05D002903 ORTHO05D003066 1.1e-11 74.3 135 43.0
BraA07t30459Z Brassica rapa HOM05D000744 ORTHO05D003066 1.1e-11 74.3 135 43.0
Gohir.D03G062500 Gossypium hirsutum HOM05D002903 ORTHO05D003066 1.1e-11 74.3 157 38.9
BolC6t40142H Brassica oleracea HOM05D002903 ORTHO05D003066 1.5e-11 73.9 134 40.3
CiPaw.16G019600 Carya illinoinensis HOM05D002903 ORTHO05D003066 1.9e-11 73.6 142 38.0
TAR625G1102 Trochodendron aralioides HOM05D002903 ORTHO05D003066 1.9e-11 73.6 159 37.1
COL.COLO4_38160 Corchorus olitorius HOM05D002903 ORTHO05D003066 3.3e-11 72.8 142 39.4
SGA_v2.0_scaffold28G11961 Striga asiatica HOM05D002903 ORTHO05D003066 3.3e-11 72.8 136 41.2
SGA_v2.0_scaffold63G21843 Striga asiatica HOM05D002903 ORTHO05D003066 3.3e-11 72.8 136 41.2
Atru.chr13.1637 Acer truncatum HOM05D002903 ORTHO05D003066 4.3e-11 72.4 66 60.6
THA.LOC104812056 Tarenaya hassleriana HOM05D002903 ORTHO05D003066 4.3e-11 72.4 133 39.1
BcaB07g32128 Brassica carinata HOM05D002903 ORTHO05D003066 5.6e-11 72.0 151 36.4
Thhalv10019082m.g Eutrema salsugineum HOM05D002903 ORTHO05D003066 5.6e-11 72.0 150 42.0
MD05G1009200 Malus domestica HOM05D002903 ORTHO05D003066 5.6e-11 72.0 152 40.1
Carub.0002s2388 Capsella rubella HOM05D002903 ORTHO05D003066 7.3e-11 71.6 133 40.6
Potri.005G185200 Populus trichocarpa HOM05D002903 ORTHO05D003066 7.3e-11 71.6 167 35.9
Sed0005775 Sechium edule HOM05D002903 ORTHO05D003066 7.3e-11 71.6 137 45.3
AT1G76980 Arabidopsis thaliana HOM05D002903 ORTHO05D003066 9.5e-11 71.2 131 39.7
Duzib093G1863 Durio zibethinus HOM05D002903 ORTHO05D003066 1.2e-10 70.9 145 37.9
Sed0027661 Sechium edule HOM05D002903 ORTHO05D003066 1.2e-10 70.9 182 35.7
Hma1.2p1_2692F.1_g327010 Hydrangea macrophylla HOM05D002903 ORTHO05D003066 1.6e-10 70.5 151 39.7
Sp5g32140 Schrenkiella parvula HOM05D002903 ORTHO05D003066 1.6e-10 70.5 133 41.4
BcaC08g47201 Brassica carinata HOM05D002903 ORTHO05D003066 2.1e-10 70.1 134 37.3
Gohir.D05G241400 Gossypium hirsutum HOM05D002903 ORTHO05D003066 2.1e-10 70.1 141 37.6
Gorai.009G250800 Gossypium raimondii HOM05D002903 ORTHO05D003066 2.1e-10 70.1 141 37.6
Thhalv10008635m.g Eutrema salsugineum HOM05D002903 ORTHO05D003066 2.8e-10 69.7 166 37.3
BcaC05g26046 Brassica carinata HOM05D002903 ORTHO05D003066 3.6e-10 69.3 131 41.2
A07p42590 Brassica napus HOM05D000744 ORTHO05D000332 3.6e-10 69.3 150 36.7
C05p20270 Brassica napus HOM05D000744 ORTHO05D000332 3.6e-10 69.3 131 41.2
BolC5t30721H Brassica oleracea HOM05D002903 ORTHO05D003066 3.6e-10 69.3 131 41.2
AL1G34490 Arabidopsis lyrata HOM05D002903 ORTHO05D003066 4.7e-10 68.9 140 41.4
BcaC05g26048 Brassica carinata HOM05D002903 ORTHO05D003066 4.7e-10 68.9 111 40.5
C06p51200 Brassica napus HOM05D000744 ORTHO05D000332 4.7e-10 68.9 135 41.5
Gohir.A05G240200 Gossypium hirsutum HOM05D002903 ORTHO05D003066 4.7e-10 68.9 131 39.7
Psat6g040160 Pisum sativum HOM05D002903 ORTHO05D003066 4.7e-10 68.9 167 35.3
DCAR_031493 Daucus carota HOM05D002903 ORTHO05D003066 6.1e-10 68.6 74 52.7
arahy.Tifrunner.gnm1.ann1.I47HGM Arachis hypogaea HOM05D002903 ORTHO05D003066 8.0e-10 68.2 68 60.3
DCAR_010240 Daucus carota HOM05D002903 ORTHO05D003066 8.0e-10 68.2 156 32.7
MBI03_g20844_MAGBIO Magnolia biondii HOM05D002903 ORTHO05D003066 8.0e-10 68.2 155 36.1
Prupe.8G011500 Prunus persica HOM05D002903 ORTHO05D003066 8.0e-10 68.2 68 57.4
arahy.Tifrunner.gnm1.ann1.Y173KB Arachis hypogaea HOM05D002903 ORTHO05D003066 1.4e-09 67.4 67 59.7
BraA06t24841Z Brassica rapa HOM05D002903 ORTHO05D003066 1.4e-09 67.4 126 39.7
ECA234G1033 Erigeron canadensis HOM05D002903 ORTHO05D003066 1.8e-09 67.0 158 36.7
Sp1g18940 Schrenkiella parvula HOM05D002903 ORTHO05D003066 1.8e-09 67.0 130 39.2
Aa31LG4G7030 Aethionema arabicum HOM05D002903 ORTHO05D003066 2.3e-09 66.6 126 37.3
Cpa.g.sc26.66 Carica papaya HOM05D002903 ORTHO05D003066 2.3e-09 66.6 160 34.4
Lj1g0005014 Lotus japonicus HOM05D002903 ORTHO05D003066 2.3e-09 66.6 109 42.2
A06p17430 Brassica napus HOM05D000744 ORTHO05D000332 3.1e-09 66.2 126 38.9
AT1G21390 Arabidopsis thaliana HOM05D002903 ORTHO05D003066 4.0e-09 65.9 141 39.7
Carub.0001s2080 Capsella rubella HOM05D002903 ORTHO05D003066 4.0e-09 65.9 138 37.7
Dinv24393 Davidia involucrata HOM05D002903 ORTHO05D003066 4.0e-09 65.9 165 33.9
MBI06_g27454_MAGBIO Magnolia biondii HOM05D002903 ORTHO05D003066 5.2e-09 65.5 160 36.2
Aa31LG7G5510 Aethionema arabicum HOM05D002903 ORTHO05D003066 2.0e-08 63.5 89 51.7
CiPaw.03G119900 Carya illinoinensis HOM05D002903 ORTHO05D003066 2.6e-08 63.2 167 31.1
FAN19G0913 Fragaria x ananassa HOM05D002903 ORTHO05D003066 2.6e-08 63.2 163 31.9
QL10p043057 Quercus lobata HOM05D002903 ORTHO05D003066 3.4e-08 62.8 173 32.9
ClCG08G003270 Citrullus lanatus HOM05D002903 ORTHO05D003066 4.4e-08 62.4 107 43.0
Psat5g083880 Pisum sativum HOM05D002903 ORTHO05D003066 5.8e-08 62.0 66 56.1
TWI79G0835 Tripterygium wilfordii HOM05D000001 ORTHO05D010162 5.8e-08 62.0 71 53.5
FAN23G0840 Fragaria x ananassa HOM05D002903 ORTHO05D003066 1.3e-07 60.8 164 33.5
FvH4_1g24530 Fragaria vesca HOM05D002903 ORTHO05D003066 1.7e-07 60.5 164 32.9
FAN28G2835 Fragaria x ananassa HOM05D002903 ORTHO05D003066 1.7e-07 60.5 155 33.5
FAN26G0773 Fragaria x ananassa HOM05D002903 ORTHO05D003066 2.2e-07 60.1 164 33.5
GSVIVG01022345001 Vitis vinifera HOM05D002903 ORTHO05D003066 2.2e-07 60.1 181 36.5
Atru.chr4.939 Acer truncatum HOM05D002903 ORTHO05D003066 2.9e-07 59.7 167 35.3
MELO3C010580.2 Cucumis melo HOM05D002903 ORTHO05D003066 3.7e-07 59.3 132 37.1
Hma1.2p1_0642F.1_g194330 Hydrangea macrophylla HOM05D002903 ORTHO05D003066 3.7e-07 59.3 116 39.7
Thecc.01G134700 Theobroma cacao HOM05D002903 ORTHO05D003066 6.4e-07 58.5 165 30.3
CsaV3_6G035580 Cucumis sativus L. HOM05D002903 ORTHO05D003066 8.3e-07 58.2 132 37.1
DCAR_001203 Daucus carota HOM05D002903 ORTHO05D003066 1.1e-06 57.8 114 41.2
TPR.G6299 Trifolium pratense HOM05D002903 ORTHO05D003066 1.1e-06 57.8 141 34.8
CDE08G0104 Ceratophyllum demersum HOM05D002903 ORTHO05D003066 1.4e-06 57.4 145 31.7
Dinv19537 Davidia involucrata HOM05D002903 ORTHO05D003066 1.9e-06 57.0 173 31.2
Medtr3g088815 Medicago truncatula HOM05D002903 ORTHO05D003066 1.9e-06 57.0 163 33.7
TWI75G0819 Tripterygium wilfordii HOM05D002903 ORTHO05D003066 1.9e-06 57.0 57 56.1
SEGI_38338 Sequoiadendron giganteum HOM05D035923 ORTHO05D022293 3.2e-06 56.2 70 51.4
CiPaw.04G081400 Carya illinoinensis HOM05D002903 ORTHO05D003066 4.1e-06 55.8 163 32.5
Gohir.D04G032100 Gossypium hirsutum HOM05D002903 ORTHO05D003066 4.1e-06 55.8 162 30.2
RcHm_v2.0_Chr2g0121941 Rosa chinensis HOM05D002903 ORTHO05D003066 4.1e-06 55.8 156 30.1
Gorai.012G036500 Gossypium raimondii HOM05D002903 ORTHO05D003066 5.4e-06 55.5 162 30.2
Oeu058296.1 Olea europaea HOM05D002903 ORTHO05D003066 5.4e-06 55.5 99 40.4
Sc26g0002820 Simmondsia chinensis HOM05D002903 ORTHO05D003066 5.4e-06 55.5 154 31.8
Actinidia15186 Actinidia chinensis HOM05D002903 ORTHO05D003066 7.0e-06 55.1 107 42.1
COL.COLO4_35772 Corchorus olitorius HOM05D002903 ORTHO05D003066 9.2e-06 54.7 82 40.2
Gohir.A05G383200 Gossypium hirsutum HOM05D002903 ORTHO05D003066 9.2e-06 54.7 165 30.3
Hund17367 Selenicereus undatus HOM05D002903 ORTHO05D003066 9.2e-06 54.7 47 53.2


User provided reference genes

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