Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold24G10320 Striga asiatica HOM05D003664 ORTHO05D003077 4.9e-79 297.7 152 100.0
SGA_v2.0_scaffold48G17999 Striga asiatica HOM05D003664 ORTHO05D003077 5.2e-20 101.7 128 53.1
SalBow7G2373 Salvia bowleyana HOM05D003664 ORTHO05D003077 7.0e-17 91.3 128 47.7
MSTRG.1088 Avicennia marina HOM05D003664 ORTHO05D003077 5.6e-14 81.6 112 50.0
FAN20G2278 Fragaria x ananassa HOM05D003664 ORTHO05D003077 1.2e-13 80.5 118 45.8
MD05G1027000 Malus domestica HOM05D003664 ORTHO05D003077 1.2e-13 80.5 120 45.0
TPR.G17057 Trifolium pratense HOM05D003664 ORTHO05D003077 1.6e-13 80.1 118 46.6
MD10G1026300 Malus domestica HOM05D003664 ORTHO05D003077 3.6e-13 79.0 123 43.9
Atru.chr13.2097 Acer truncatum HOM05D003664 ORTHO05D003077 4.7e-13 78.6 132 43.9
ECA232G3156 Erigeron canadensis HOM05D003664 ORTHO05D003077 8.0e-13 77.8 127 41.7
FAN24G2558 Fragaria x ananassa HOM05D003664 ORTHO05D003077 8.0e-13 77.8 112 46.4
FAN27G2664 Fragaria x ananassa HOM05D003664 ORTHO05D003077 8.0e-13 77.8 111 46.8
Atru.chr3.87 Acer truncatum HOM05D003664 ORTHO05D003077 1.0e-12 77.4 132 43.2
FAN15G1672 Fragaria x ananassa HOM05D003664 ORTHO05D003077 1.4e-12 77.0 112 46.4
CANSAT25G1346 Cannabis sativa HOM05D003664 ORTHO05D003077 3.0e-12 75.9 127 42.5
GSVIVG01029696001 Vitis vinifera HOM05D003664 ORTHO05D003077 3.0e-12 75.9 125 42.4
Sed0009435 Sechium edule HOM05D003664 ORTHO05D003077 4.0e-12 75.5 129 41.9
Gohir.D02G069300 Gossypium hirsutum HOM05D003664 ORTHO05D003077 5.2e-12 75.1 135 43.7
Gorai.005G078500 Gossypium raimondii HOM05D003664 ORTHO05D003077 5.2e-12 75.1 135 43.7
CsaV3_6G005170 Cucumis sativus L. HOM05D003664 ORTHO05D003077 6.8e-12 74.7 106 47.2
Dinv25872 Davidia involucrata HOM05D003664 ORTHO05D003077 6.8e-12 74.7 125 46.4
Duzib041G0494 Durio zibethinus HOM05D003664 ORTHO05D003077 6.8e-12 74.7 131 42.7
Dinv19338 Davidia involucrata HOM05D000531 ORTHO05D003077 1.2e-11 73.9 120 44.2
Peaxi162Scf00599g00047 Petunia axillaris HOM05D003664 ORTHO05D003077 1.5e-11 73.6 122 43.4
Gohir.A02G063700 Gossypium hirsutum HOM05D003664 ORTHO05D003077 2.0e-11 73.2 135 43.0
Lj7A374G24 Lonicera japonica HOM05D003664 ORTHO05D003077 2.0e-11 73.2 125 43.2
unitig_749.g13916 Utricularia gibba HOM05D003664 ORTHO05D003077 2.6e-11 72.8 126 42.9
MD08G1224700 Malus domestica HOM05D003664 ORTHO05D003077 3.4e-11 72.4 117 43.6
vmacro21152 Vaccinium macrocarpon HOM05D003664 ORTHO05D003077 3.4e-11 72.4 131 41.2
ClCG09G010160 Citrullus lanatus HOM05D003664 ORTHO05D003077 4.4e-11 72.0 136 39.7
Lalb_Chr06g0161641 Lupinus albus HOM05D003664 ORTHO05D003077 4.4e-11 72.0 126 42.1
SGA_v2.0_scaffold145G36060 Striga asiatica HOM05D003664 ORTHO05D003077 4.4e-11 72.0 119 43.7
Dinv41078 Davidia involucrata HOM05D006151 ORTHO05D007487 5.7e-11 71.6 125 44.8
Nitab4.5_0009071g0010 Nicotiana tabacum HOM05D003664 ORTHO05D003077 5.7e-11 71.6 122 44.3
EL10Ac1g01559 Beta vulgaris HOM05D003664 ORTHO05D003077 7.5e-11 71.2 123 43.1
Ca_10678_v3 Cicer arietinum L. HOM05D003664 ORTHO05D003077 7.5e-11 71.2 135 42.2
VMungo0720G2434 Vigna mungo HOM05D003664 ORTHO05D003077 7.5e-11 71.2 135 41.5
PGR042G1164 Punica granatum HOM05D003664 ORTHO05D003077 9.8e-11 70.9 125 42.4
SGA_v2.0_scaffold292G47360 Striga asiatica HOM05D003664 ORTHO05D003077 9.8e-11 70.9 129 44.2
CAN.G675.1 Capsicum annuum HOM05D003664 ORTHO05D003077 1.3e-10 70.5 125 41.6
Thhalv10003246m.g Eutrema salsugineum HOM05D003664 ORTHO05D003077 1.3e-10 70.5 130 41.5
MD15G1417900 Malus domestica HOM05D003664 ORTHO05D003077 1.3e-10 70.5 114 42.1
Nitab4.5_0001062g0080 Nicotiana tabacum HOM05D003664 ORTHO05D003077 1.3e-10 70.5 122 44.3
BcaC06g31656 Brassica carinata HOM05D003664 ORTHO05D003077 1.7e-10 70.1 126 39.7
C07p26710 Brassica napus HOM05D003664 ORTHO05D003077 1.7e-10 70.1 126 39.7
Manes.04G058300 Manihot esculenta HOM05D003664 ORTHO05D003077 1.7e-10 70.1 124 41.1
CiPaw.15G015700 Carya illinoinensis HOM05D003664 ORTHO05D003077 2.2e-10 69.7 54 72.2
SalBow6G1005 Salvia bowleyana HOM05D003664 ORTHO05D003077 2.2e-10 69.7 119 41.2
Dinv24251 Davidia involucrata HOM05D000531 ORTHO05D003077 3.7e-10 68.9 118 40.7
Solyc04g071510.3 Solanum lycopersicum HOM05D003664 ORTHO05D003077 3.7e-10 68.9 125 40.8
Sopen04g027480 Solanum pennellii HOM05D003664 ORTHO05D003077 3.7e-10 68.9 125 40.8
PGSC0003DMG400029774 Solanum tuberosum HOM05D003664 ORTHO05D003077 3.7e-10 68.9 127 40.9
Atru.chr6.996 Acer truncatum HOM05D003664 ORTHO05D003077 6.4e-10 68.2 104 45.2
Aa31LG5G3190 Aethionema arabicum HOM05D003664 ORTHO05D003077 6.4e-10 68.2 123 39.8
Migut.B00653 Erythranthe guttata HOM05D003664 ORTHO05D003077 6.4e-10 68.2 120 40.8
Glyma.10G223800 Glycine max HOM05D003664 ORTHO05D003077 6.4e-10 68.2 125 42.4
Peaxi162Scf01290g00246 Petunia axillaris HOM05D003664 ORTHO05D003077 6.4e-10 68.2 115 41.7
Prupe.1G562000 Prunus persica HOM05D003664 ORTHO05D003077 6.4e-10 68.2 114 41.2
THA.LOC104810660 Tarenaya hassleriana HOM05D003664 ORTHO05D003077 8.3e-10 67.8 127 40.9
Thecc.02G042400 Theobroma cacao HOM05D000531 ORTHO05D003077 8.3e-10 67.8 118 43.2
Carub.0008s0445 Capsella rubella HOM05D003664 ORTHO05D003077 1.1e-09 67.4 127 39.4
Gohir.A01G175600 Gossypium hirsutum HOM05D000531 ORTHO05D003077 1.1e-09 67.4 118 41.5
Gorai.002G207000 Gossypium raimondii HOM05D000531 ORTHO05D003077 1.1e-09 67.4 118 41.5
RcHm_v2.0_Chr7g0224461 Rosa chinensis HOM05D003664 ORTHO05D003077 1.1e-09 67.4 117 42.7
Nitab4.5_0000249g0370 Nicotiana tabacum HOM05D003664 ORTHO05D003077 1.4e-09 67.0 105 42.9
Actinidia39065 Actinidia chinensis HOM05D003664 ORTHO05D003077 1.8e-09 66.6 116 40.5
CiPaw.05G041300 Carya illinoinensis HOM05D000531 ORTHO05D003077 1.8e-09 66.6 118 41.5
Lsat_1_v5_gn_7_79540 Lactuca sativa HOM05D003664 ORTHO05D003077 1.8e-09 66.6 119 39.5
Medtr1g098590 Medicago truncatula HOM05D003664 ORTHO05D003077 1.8e-09 66.6 126 42.9
Migut.N01024 Erythranthe guttata HOM05D003664 ORTHO05D003077 2.4e-09 66.2 117 41.9
CSS0046013 Camellia sinensis var. sinensis HOM05D000531 ORTHO05D003077 4.1e-09 65.5 143 37.1
Eucgr.G00615 Eucalyptus grandis HOM05D003664 ORTHO05D003077 4.1e-09 65.5 116 40.5
A06p47480 Brassica napus HOM05D003664 ORTHO05D003077 5.4e-09 65.1 126 38.9
BraA06t27617Z Brassica rapa HOM05D003664 ORTHO05D003077 5.4e-09 65.1 126 38.9
Ciclev10002059m.g Citrus clementina HOM05D003664 ORTHO05D003077 5.4e-09 65.1 57 68.4
Actinidia00228 Actinidia chinensis HOM05D003664 ORTHO05D003077 7.0e-09 64.7 110 41.8
arahy.Tifrunner.gnm1.ann1.IFT9HD Arachis hypogaea HOM05D003664 ORTHO05D003077 7.0e-09 64.7 116 43.1
arahy.Tifrunner.gnm1.ann1.RT05XZ Arachis hypogaea HOM05D003664 ORTHO05D003077 7.0e-09 64.7 116 43.1
Phvul.007G081000 Phaseolus vulgaris HOM05D003664 ORTHO05D003077 7.0e-09 64.7 135 39.3
Solyc01g104650.3 Solanum lycopersicum HOM05D003664 ORTHO05D003077 7.0e-09 64.7 105 41.9
Sopen01g047160 Solanum pennellii HOM05D003664 ORTHO05D003077 7.0e-09 64.7 105 41.9
Cfa018318 Carpinus fangiana HOM05D006151 ORTHO05D007487 9.2e-09 64.3 60 65.0
Haze_17759 Corylus avellana HOM05D003664 ORTHO05D003077 9.2e-09 64.3 60 65.0
Duzib052G0839 Durio zibethinus HOM05D000531 ORTHO05D003077 9.2e-09 64.3 118 41.5
Duzib248G0788 Durio zibethinus HOM05D000531 ORTHO05D003077 9.2e-09 64.3 118 40.7
FAN08G0606 Fragaria x ananassa HOM05D003664 ORTHO05D003077 9.2e-09 64.3 113 41.6
Rhsim05G0113600 Rhododendron simsii HOM05D003664 ORTHO05D003077 9.2e-09 64.3 130 40.8
Cpa.g.sc21.207 Carica papaya HOM05D003664 ORTHO05D003077 1.6e-08 63.5 50 70.0
PSO210G5664 Papaver somniferum HOM05D000531 ORTHO05D003077 1.6e-08 63.5 127 38.6
PSO447G0105 Papaver somniferum HOM05D000531 ORTHO05D003077 1.6e-08 63.5 127 38.6
Duzib116G0254 Durio zibethinus HOM05D003664 ORTHO05D003077 2.0e-08 63.2 63 61.9
MSTRG.27834 Avicennia marina HOM05D003664 ORTHO05D003077 3.5e-08 62.4 104 41.3
Actinidia17788 Actinidia chinensis HOM05D003664 ORTHO05D003077 4.6e-08 62.0 57 70.2
Cc02_g22080 Coffea canephora HOM05D000531 ORTHO05D003077 4.6e-08 62.0 104 41.3
MELO3C014384.2 Cucumis melo HOM05D003664 ORTHO05D003077 4.6e-08 62.0 125 36.0
Zm00001eb146690 Zea mays HOM05D003664 ORTHO05D003077 4.6e-08 62.0 126 37.3
BcaC06g34596 Brassica carinata HOM05D003664 ORTHO05D003077 5.9e-08 61.6 132 36.4
BolC7t43199H Brassica oleracea HOM05D003664 ORTHO05D003077 5.9e-08 61.6 132 36.4
Sc02g0004010 Simmondsia chinensis HOM05D003664 ORTHO05D003077 5.9e-08 61.6 71 57.7
FvH4_2g13640 Fragaria vesca HOM05D003664 ORTHO05D003077 7.8e-08 61.2 112 40.2
FvH4_5g30210 Fragaria vesca HOM05D003664 ORTHO05D003077 7.8e-08 61.2 117 40.2
HanXRQChr11g0337451 Helianthus annuus HOM05D003664 ORTHO05D003077 7.8e-08 61.2 103 42.7
HPP92_000067 Vanilla planifolia HOM05D000531 ORTHO05D003077 7.8e-08 61.2 119 37.8
GSVIVG01034540001 Vitis vinifera HOM05D003664 ORTHO05D003077 7.8e-08 61.2 56 64.3
ECA236G2243 Erigeron canadensis HOM05D001368 ORTHO05D003108 1.0e-07 60.8 119 38.7
Lj6g0000417 Lotus japonicus HOM05D003664 ORTHO05D003077 1.0e-07 60.8 116 37.1
Psat6g192360 Pisum sativum HOM05D003664 ORTHO05D003077 1.0e-07 60.8 58 67.2
AL1G13580 Arabidopsis lyrata HOM05D003664 ORTHO05D003077 1.3e-07 60.5 128 36.7
TWI60G1052 Tripterygium wilfordii HOM05D003664 ORTHO05D003077 1.3e-07 60.5 52 69.2
CSS0008087 Camellia sinensis var. sinensis HOM05D003664 ORTHO05D003077 1.7e-07 60.1 57 66.7
CSS0036560 Camellia sinensis var. sinensis HOM05D003664 ORTHO05D003077 1.7e-07 60.1 57 66.7
COL.COLO4_29845 Corchorus olitorius HOM05D003664 ORTHO05D003077 1.7e-07 60.1 51 68.6
FAN18G2222 Fragaria x ananassa HOM05D003664 ORTHO05D003077 1.7e-07 60.1 117 39.3
Gorai.005G259700 Gossypium raimondii HOM05D000531 ORTHO05D003077 1.7e-07 60.1 105 40.0
Manes.02G180200 Manihot esculenta HOM05D003664 ORTHO05D003077 1.7e-07 60.1 50 70.0
SHI09064 Sapria himalayana HOM05D003664 ORTHO05D003077 1.7e-07 60.1 60 65.0
TWI32G0127 Tripterygium wilfordii HOM05D003664 ORTHO05D003077 1.7e-07 60.1 132 39.4
Lalb_Chr21g0305521 Lupinus albus HOM05D003664 ORTHO05D003077 2.3e-07 59.7 70 58.6
TAR381G0951 Trochodendron aralioides HOM05D000531 ORTHO05D003077 2.3e-07 59.7 108 38.0
Sed0018127 Sechium edule HOM05D000531 ORTHO05D003077 3.0e-07 59.3 59 57.6
Hund17442 Selenicereus undatus HOM05D003664 ORTHO05D003077 3.0e-07 59.3 111 42.3
Aqoxy5G02071 Aquilegia oxysepala HOM05D000531 ORTHO05D003077 3.9e-07 58.9 117 40.2
Ciclev10002029m.g Citrus clementina HOM05D003664 ORTHO05D003077 3.9e-07 58.9 96 43.8
Hma1.2p1_0299F.1_g117790 Hydrangea macrophylla HOM05D003664 ORTHO05D003077 3.9e-07 58.9 56 66.1
AT1G03970 Arabidopsis thaliana HOM05D003664 ORTHO05D003077 5.0e-07 58.5 120 36.7
Cc10_g14440 Coffea canephora HOM05D003664 ORTHO05D003077 5.0e-07 58.5 64 59.4
CsaV3_6G037310 Cucumis sativus L. HOM05D003664 ORTHO05D003077 5.0e-07 58.5 58 55.2
Glyma.20G168102 Glycine max HOM05D003664 ORTHO05D003077 5.0e-07 58.5 126 39.7
HanXRQChr11g0320331 Helianthus annuus HOM05D003664 ORTHO05D003077 5.0e-07 58.5 61 59.0
Nn1g06071 Nelumbo nucifera HOM05D000531 ORTHO05D003077 5.0e-07 58.5 127 39.4
Sabra05G0147400 Salix brachista HOM05D003664 ORTHO05D003077 5.0e-07 58.5 60 61.7
THA.LOC104809203 Tarenaya hassleriana HOM05D003664 ORTHO05D003077 5.0e-07 58.5 97 42.3
AUR62026695 Chenopodium quinoa HOM05D003664 ORTHO05D003077 6.6e-07 58.2 44 72.7
Duzib132G1178 Durio zibethinus HOM05D003664 ORTHO05D003077 6.6e-07 58.2 114 39.5
Gohir.A03G210400 Gossypium hirsutum HOM05D000531 ORTHO05D003077 6.6e-07 58.2 104 40.4
Manes.18G092700 Manihot esculenta HOM05D003664 ORTHO05D003077 6.6e-07 58.2 52 65.4
Thecc.08G153700 Theobroma cacao HOM05D003664 ORTHO05D003077 6.6e-07 58.2 63 60.3
Cfa005557 Carpinus fangiana HOM05D003664 ORTHO05D003077 8.6e-07 57.8 119 37.8
Rhsim11G0132800 Rhododendron simsii HOM05D000531 ORTHO05D003077 8.6e-07 57.8 57 57.9
AL7G25630 Arabidopsis lyrata HOM05D003664 ORTHO05D003077 1.1e-06 57.4 122 36.9
Potri.002G067400 Populus trichocarpa HOM05D003664 ORTHO05D003077 1.1e-06 57.4 38 81.6
Potri.005G192900 Populus trichocarpa HOM05D003664 ORTHO05D003077 1.1e-06 57.4 38 81.6
AL1G64620 Arabidopsis lyrata HOM05D003664 ORTHO05D003077 1.5e-06 57.0 122 36.9
AL8G15970 Arabidopsis lyrata HOM05D003664 ORTHO05D003077 1.5e-06 57.0 121 36.4
BcaC05g24480 Brassica carinata HOM05D003664 ORTHO05D003077 1.5e-06 57.0 119 34.5
C05p02290 Brassica napus HOM05D003664 ORTHO05D003077 1.5e-06 57.0 114 35.1
A10p02480 Brassica napus HOM05D003664 ORTHO05D003077 1.9e-06 56.6 128 35.2
BolC5t29007H Brassica oleracea HOM05D003664 ORTHO05D003077 1.9e-06 56.6 128 35.2
BraA10t42515Z Brassica rapa HOM05D003664 ORTHO05D003077 1.9e-06 56.6 128 35.2
Thhalv10009710m.g Eutrema salsugineum HOM05D003664 ORTHO05D003077 1.9e-06 56.6 128 35.2
vmacro01795 Vaccinium macrocarpon HOM05D000531 ORTHO05D003077 1.9e-06 56.6 53 60.4
ClCG08G007040 Citrullus lanatus HOM05D003664 ORTHO05D003077 2.5e-06 56.2 38 78.9
Glyma.08G183600 Glycine max HOM05D000531 ORTHO05D003077 3.3e-06 55.8 118 36.4
Nn5g28759 Nelumbo nucifera HOM05D000531 ORTHO05D003077 3.3e-06 55.8 51 62.7
ClCG09G014130 Citrullus lanatus HOM05D000531 ORTHO05D003077 4.3e-06 55.5 58 55.2
SalBow6G0585 Salvia bowleyana HOM05D003664 ORTHO05D003077 4.3e-06 55.5 52 59.6
TAR625G1406 Trochodendron aralioides HOM05D000531 ORTHO05D003077 4.3e-06 55.5 133 34.6
arahy.Tifrunner.gnm1.ann1.G5ZZFA Arachis hypogaea HOM05D003664 ORTHO05D003077 5.6e-06 55.1 40 75.0
arahy.Tifrunner.gnm1.ann1.U157SK Arachis hypogaea HOM05D003664 ORTHO05D003077 5.6e-06 55.1 40 75.0
QL02p039006 Quercus lobata HOM05D003664 ORTHO05D003077 5.6e-06 55.1 124 36.3
Sed0025516 Sechium edule HOM05D000531 ORTHO05D003077 5.6e-06 55.1 53 58.5
TAR628G1582 Trochodendron aralioides HOM05D000531 ORTHO05D003077 5.6e-06 55.1 109 37.6
Lj9A313T48 Lonicera japonica HOM05D000531 ORTHO05D003077 7.3e-06 54.7 49 59.2
Zm00001eb289080 Zea mays HOM05D023473 ORTHO05D003077 7.3e-06 54.7 117 34.2
DCAR_001141 Daucus carota HOM05D003664 ORTHO05D003077 9.5e-06 54.3 58 56.9
Oeu032649.1 Olea europaea HOM05D000531 ORTHO05D003077 9.5e-06 54.3 54 59.3


User provided reference genes

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