Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold24G10311 Striga asiatica HOM05D004107 ORTHO05D004738 2.4e-78 295.4 150 100.0
Oeu033892.1 Olea europaea HOM05D004107 ORTHO05D004738 3.9e-28 128.6 157 50.3
SalBow8G0975 Salvia bowleyana HOM05D004107 ORTHO05D004738 6.7e-28 127.9 148 51.4
MSTRG.15982 Avicennia marina HOM05D004107 ORTHO05D004738 8.7e-28 127.5 148 52.0
MSTRG.7222 Avicennia marina HOM05D004107 ORTHO05D004738 1.9e-27 126.3 148 52.0
Oeu002728.1 Olea europaea HOM05D004107 ORTHO05D004738 8.2e-26 120.9 132 55.3
Cc01_g06630 Coffea canephora HOM05D004107 ORTHO05D004738 1.8e-25 119.8 117 56.4
unitig_748.g7576 Utricularia gibba HOM05D004107 ORTHO05D004738 1.5e-24 116.7 117 57.3
Solyc03g031700.4 Solanum lycopersicum HOM05D004107 ORTHO05D004738 2.0e-24 116.3 115 54.8
Sopen03g005570 Solanum pennellii HOM05D004107 ORTHO05D004738 2.0e-24 116.3 115 54.8
PGSC0003DMG400005080 Solanum tuberosum HOM05D004107 ORTHO05D004738 2.6e-24 115.9 115 53.9
Migut.M01308 Erythranthe guttata HOM05D004107 ORTHO05D004738 2.2e-23 112.8 148 48.0
Lsat_1_v5_gn_1_128700 Lactuca sativa HOM05D004107 ORTHO05D004738 2.2e-23 112.8 114 57.0
Sopen02g025130 Solanum pennellii HOM05D004107 ORTHO05D004738 2.9e-23 112.5 115 54.8
HanXRQChr01g0004241 Helianthus annuus HOM05D004107 ORTHO05D004738 3.8e-23 112.1 105 61.0
Hma1.2p1_0558F.1_g178480 Hydrangea macrophylla HOM05D004107 ORTHO05D004738 3.8e-23 112.1 121 54.5
Nitab4.5_0003254g0100 Nicotiana tabacum HOM05D004107 ORTHO05D004738 3.8e-23 112.1 142 48.6
Dinv13883 Davidia involucrata HOM05D004107 ORTHO05D004738 6.5e-23 111.3 114 59.6
Nitab4.5_0006137g0030 Nicotiana tabacum HOM05D004107 ORTHO05D004738 8.4e-23 110.9 142 47.9
PGSC0003DMG400016484 Solanum tuberosum HOM05D004107 ORTHO05D004738 2.5e-22 109.4 141 47.5
Peaxi162Scf00853g00314 Petunia axillaris HOM05D004107 ORTHO05D004738 3.2e-22 109.0 131 49.6
Solyc02g080440.3 Solanum lycopersicum HOM05D004107 ORTHO05D004738 4.2e-22 108.6 148 45.9
Nitab4.5_0003343g0020 Nicotiana tabacum HOM05D004107 ORTHO05D004738 1.2e-21 107.1 136 47.8
EL10Ac3g05771 Beta vulgaris HOM05D004107 ORTHO05D004738 4.6e-21 105.1 120 51.7
Nitab4.5_0009691g0010 Nicotiana tabacum HOM05D004107 ORTHO05D004738 4.6e-21 105.1 117 49.6
Ah.07g208390 Amaranthus hybridus HOM05D004107 ORTHO05D004738 7.9e-21 104.4 111 54.1
AUR62021968 Chenopodium quinoa HOM05D004107 ORTHO05D004738 7.9e-21 104.4 124 48.4
TAR627G0615 Trochodendron aralioides HOM05D004107 ORTHO05D004738 7.9e-21 104.4 117 48.7
AUR62012688 Chenopodium quinoa HOM05D004107 ORTHO05D004738 1.0e-20 104.0 124 48.4
ECA248G0760 Erigeron canadensis HOM05D004107 ORTHO05D004738 1.3e-20 103.6 98 59.2
Lj1A1229G40 Lonicera japonica HOM05D004107 ORTHO05D004738 1.8e-20 103.2 119 51.3
TAR629G1093 Trochodendron aralioides HOM05D004107 ORTHO05D004738 1.8e-20 103.2 115 51.3
CAN.G569.15 Capsicum annuum HOM05D004107 ORTHO05D004738 5.1e-20 101.7 128 46.9
DCAR_008142 Daucus carota HOM05D004107 ORTHO05D004738 5.1e-20 101.7 130 49.2
CSS0040304 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 1.5e-19 100.1 100 55.0
CSS0041721 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 1.5e-19 100.1 100 55.0
PSO339G3293 Papaver somniferum HOM05D004107 ORTHO05D004738 7.4e-19 97.8 111 50.5
vmacro10117 Vaccinium macrocarpon HOM05D004107 ORTHO05D004738 7.4e-19 97.8 100 55.0
Peaxi162Scf00079g01510 Petunia axillaris HOM05D004107 ORTHO05D004738 9.7e-19 97.4 127 44.9
Psat0s2739g0120 Pisum sativum HOM05D004107 ORTHO05D004738 9.7e-19 97.4 136 44.1
Rhsim02G0109300 Rhododendron simsii HOM05D004107 ORTHO05D004738 9.7e-19 97.4 99 54.5
Rhsim02G0109900 Rhododendron simsii HOM05D004107 ORTHO05D004738 3.7e-18 95.5 99 53.5
Aqoxy1G02185 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 1.1e-17 94.0 96 52.1
Hund21401 Selenicereus undatus HOM05D004107 ORTHO05D004738 1.1e-17 94.0 145 42.8
CSS0016174 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 1.4e-17 93.6 101 52.5
PSO541G4368 Papaver somniferum HOM05D004107 ORTHO05D004738 1.4e-17 93.6 129 41.1
BcaB01g01836 Brassica carinata HOM05D004107 ORTHO05D004738 1.8e-17 93.2 134 47.8
PSO675G6282 Papaver somniferum HOM05D004107 ORTHO05D004738 1.8e-17 93.2 129 41.1
HanXRQChr11g0323581 Helianthus annuus HOM05D004107 ORTHO05D004738 4.1e-17 92.0 121 47.1
A09p26110 Brassica napus HOM05D004107 ORTHO05D004738 2.0e-16 89.7 130 46.9
BraA09t38178Z Brassica rapa HOM05D004107 ORTHO05D004738 2.0e-16 89.7 135 45.9
CSS0046928 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 2.0e-16 89.7 133 44.4
CDE07G0300 Ceratophyllum demersum HOM05D004107 ORTHO05D004738 2.6e-16 89.4 114 45.6
GSVIVG01012742001 Vitis vinifera HOM05D004107 ORTHO05D004738 3.4e-16 89.0 104 49.0
CDE06G1524 Ceratophyllum demersum HOM05D004107 ORTHO05D004738 1.0e-15 87.4 114 44.7
MBI02_g22110_MAGBIO Magnolia biondii HOM05D004107 ORTHO05D004738 1.7e-15 86.7 131 42.7
Sc05g0009110 Simmondsia chinensis HOM05D004107 ORTHO05D004738 3.8e-15 85.5 123 43.9
Sp6g04170 Schrenkiella parvula HOM05D004107 ORTHO05D004738 5.0e-15 85.1 114 48.2
AL6G48260 Arabidopsis lyrata HOM05D004107 ORTHO05D004738 6.5e-15 84.7 136 44.1
Manes.16G008200 Manihot esculenta HOM05D004107 ORTHO05D004738 6.5e-15 84.7 113 46.0
Sabra04G0009200 Salix brachista HOM05D004107 ORTHO05D004738 6.5e-15 84.7 121 46.3
Aa31LG9G9700 Aethionema arabicum HOM05D004107 ORTHO05D004738 8.5e-15 84.3 118 45.8
Potri.004G016900 Populus trichocarpa HOM05D004107 ORTHO05D004738 8.5e-15 84.3 116 45.7
CARHR252770 Cardamine hirsuta HOM05D004107 ORTHO05D004738 1.4e-14 83.6 121 47.1
Lj5g0005763 Lotus japonicus HOM05D004107 ORTHO05D004738 1.4e-14 83.6 112 47.3
Thecc.06G087700 Theobroma cacao HOM05D004107 ORTHO05D004738 1.9e-14 83.2 110 49.1
AT5G44316 Arabidopsis thaliana HOM05D004107 ORTHO05D004738 4.2e-14 82.0 144 38.2
Duzib192G0236 Durio zibethinus HOM05D004107 ORTHO05D004738 4.2e-14 82.0 110 48.2
Sed0003265 Sechium edule HOM05D004107 ORTHO05D004738 4.2e-14 82.0 117 47.0
THA.LOC104813092 Tarenaya hassleriana HOM05D004107 ORTHO05D004738 4.2e-14 82.0 116 48.3
Thecc.06G219000 Theobroma cacao HOM05D004107 ORTHO05D004738 4.2e-14 82.0 110 49.1
Carub.0006s3269 Capsella rubella HOM05D004107 ORTHO05D004738 5.5e-14 81.6 119 44.5
AT4G04770 Arabidopsis thaliana HOM05D004107 ORTHO05D004738 9.3e-14 80.9 114 46.5
TWI63G0549 Tripterygium wilfordii HOM05D004107 ORTHO05D004738 9.3e-14 80.9 126 43.7
ClCG03G004800 Citrullus lanatus HOM05D004107 ORTHO05D004738 1.2e-13 80.5 111 48.6
Ciclev10014785m.g Citrus clementina HOM05D004107 ORTHO05D004738 1.2e-13 80.5 116 46.6
Os01g0830000 Oryza sativa ssp. japonica HOM05D004107 ORTHO05D004738 1.2e-13 80.5 124 41.1
Sed0011656 Sechium edule HOM05D004107 ORTHO05D004738 1.2e-13 80.5 115 47.8
Cpa.g.sc198.44 Carica papaya HOM05D004107 ORTHO05D004738 2.1e-13 79.7 116 43.1
Thhalv10028516m.g Eutrema salsugineum HOM05D004107 ORTHO05D004738 3.6e-13 79.0 115 46.1
BolC9t56149H Brassica oleracea HOM05D004107 ORTHO05D004738 4.6e-13 78.6 134 41.0
MELO3C002463.2 Cucumis melo HOM05D004107 ORTHO05D004738 4.6e-13 78.6 111 47.7
CsaV3_1G010840 Cucumis sativus L. HOM05D004107 ORTHO05D004738 4.6e-13 78.6 111 47.7
BcaC04g21323 Brassica carinata HOM05D004107 ORTHO05D004738 6.1e-13 78.2 134 41.0
C09p33150 Brassica napus HOM05D004107 ORTHO05D004738 6.1e-13 78.2 134 41.0
Gohir.A05G169500 Gossypium hirsutum HOM05D004107 ORTHO05D004738 6.1e-13 78.2 110 47.3
Gohir.D05G172700 Gossypium hirsutum HOM05D004107 ORTHO05D004738 6.1e-13 78.2 110 47.3
Gorai.009G177900 Gossypium raimondii HOM05D004107 ORTHO05D004738 6.1e-13 78.2 110 47.3
TWI38G1857 Tripterygium wilfordii HOM05D004107 ORTHO05D004738 6.1e-13 78.2 160 39.4
Haze_14623 Corylus avellana HOM05D004107 ORTHO05D004738 7.9e-13 77.8 102 48.0
Lalb_Chr11g0064371 Lupinus albus HOM05D004107 ORTHO05D004738 7.9e-13 77.8 108 45.4
SEGI_39818 Sequoiadendron giganteum HOM05D004107 ORTHO05D004738 7.9e-13 77.8 117 36.8
HPP92_023742 Vanilla planifolia HOM05D004107 ORTHO05D004738 7.9e-13 77.8 119 37.8
QL02p078433 Quercus lobata HOM05D004107 ORTHO05D004738 1.0e-12 77.4 159 36.5
Psat3g165680 Pisum sativum HOM05D004107 ORTHO05D004738 1.4e-12 77.0 139 41.0
PGR042G1667 Punica granatum HOM05D004107 ORTHO05D004738 1.4e-12 77.0 112 44.6
CiPaw.04G022400 Carya illinoinensis HOM05D004107 ORTHO05D004738 2.3e-12 76.3 102 45.1
CBR_g37549 Chara braunii HOM05D004107 ORTHO05D004738 2.3e-12 76.3 102 38.2
CANSAT56G3413 Cannabis sativa HOM05D004107 ORTHO05D004738 3.0e-12 75.9 124 39.5
Prupe.4G022500 Prunus persica HOM05D004107 ORTHO05D004738 3.0e-12 75.9 99 45.5
Atru.chr10.2206 Acer truncatum HOM05D004107 ORTHO05D004738 3.9e-12 75.5 111 43.2
Cfa007474 Carpinus fangiana HOM05D004107 ORTHO05D004738 3.9e-12 75.5 102 46.1
Medtr7g030030 Medicago truncatula HOM05D004107 ORTHO05D004738 5.1e-12 75.1 133 39.1
Medtr7g038720 Medicago truncatula HOM05D004107 ORTHO05D004738 5.1e-12 75.1 133 39.1
Phvul.003G172700 Phaseolus vulgaris HOM05D004107 ORTHO05D004738 6.7e-12 74.7 113 43.4
arahy.Tifrunner.gnm1.ann1.1W8BNJ Arachis hypogaea HOM05D004107 ORTHO05D004738 1.1e-11 73.9 141 37.6
Ca_09479_v3 Cicer arietinum L. HOM05D004107 ORTHO05D004738 1.1e-11 73.9 109 46.8
arahy.Tifrunner.gnm1.ann1.G9MXMR Arachis hypogaea HOM05D004107 ORTHO05D004738 1.5e-11 73.6 112 42.0
Pp3c1_9330 Physcomitrium patens HOM05D004107 ORTHO05D004738 2.5e-11 72.8 118 39.0
Pp3c2_37190 Physcomitrium patens HOM05D004107 ORTHO05D004738 2.5e-11 72.8 114 40.4
SMO118G0281 Selaginella moellendorffii HOM05D004107 ORTHO05D004738 3.3e-11 72.4 109 39.4
TPR.G39070 Trifolium pratense HOM05D004107 ORTHO05D004738 3.3e-11 72.4 132 39.4
MD05G1344000 Malus domestica HOM05D004107 ORTHO05D004738 4.3e-11 72.0 99 44.4
CiPaw.03G033800 Carya illinoinensis HOM05D004107 ORTHO05D004738 5.7e-11 71.6 104 44.2
ATR0772G029 Amborella trichopoda HOM05D004107 ORTHO05D004738 7.4e-11 71.2 89 42.7
FAN21G0289 Fragaria x ananassa HOM05D004107 ORTHO05D004738 9.7e-11 70.9 162 35.8
Glyma.13G163700 Glycine max HOM05D004107 ORTHO05D004738 9.7e-11 70.9 102 45.1
Lalb_Chr23g0269471 Lupinus albus HOM05D004107 ORTHO05D004738 1.3e-10 70.5 124 37.9
Mapoly0043s0049 Marchantia polymorpha HOM05D004107 ORTHO05D004738 1.3e-10 70.5 107 37.4
Medtr8g019500 Medicago truncatula HOM05D004107 ORTHO05D004738 1.7e-10 70.1 147 35.4
RcHm_v2.0_Chr5g0003451 Rosa chinensis HOM05D004107 ORTHO05D004738 1.7e-10 70.1 134 41.0
VMungo1215G1998 Vigna mungo HOM05D004107 ORTHO05D004738 2.2e-10 69.7 102 45.1
MD10G1319900 Malus domestica HOM05D004107 ORTHO05D004738 4.8e-10 68.6 99 42.4
Rhsim04G0103400 Rhododendron simsii HOM05D004107 ORTHO05D004738 4.8e-10 68.6 71 46.5
Duzib211G0221 Durio zibethinus HOM05D004107 ORTHO05D004738 6.3e-10 68.2 66 51.5
Glyma.17G107200 Glycine max HOM05D004107 ORTHO05D004738 8.2e-10 67.8 131 38.9
EL10Ac8g18634 Beta vulgaris HOM05D004107 ORTHO05D004738 2.4e-09 66.2 100 42.0
FvH4_3g02300 Fragaria vesca HOM05D004107 ORTHO05D004738 4.1e-09 65.5 99 42.4
CARHR107510 Cardamine hirsuta HOM05D004107 ORTHO05D004738 1.2e-08 63.9 102 40.2
FAN25G2291 Fragaria x ananassa HOM05D004107 ORTHO05D004738 2.0e-08 63.2 149 35.6
Cre15.g643600 Chlamydomonas reinhardtii HOM05D004107 ORTHO05D004738 1.4e-06 57.0 129 32.6
SHI00520 Sapria himalayana HOM05D004107 ORTHO05D004738 5.5e-06 55.1 111 34.2


User provided reference genes

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