Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold24G10307 Striga asiatica HOM05D014097 ORTHO05D401097 1.3e-230 802.7 415 100.0
SGA_v2.0_scaffold24G10333 Striga asiatica HOM05D014097 ORTHO05D405786 7.4e-170 600.9 444 74.3
SGA_v2.0_scaffold24G10339 Striga asiatica HOM05D014097 ORTHO05D401845 6.7e-46 189.1 220 55.5
SGA_v2.0_scaffold119G32665 Striga asiatica HOM05D014097 ORTHO05D402550 8.6e-25 119.0 225 38.7
SGA_v2.0_scaffold24G10340 Striga asiatica HOM05D014097 ORTHO05D401948 2.1e-15 87.8 166 42.2
SGA_v2.0_scaffold24G10337 Striga asiatica HOM05D001302 ORTHO05D001107 2.9e-12 77.4 35 100.0
SGA_v2.0_scaffold24G10347 Striga asiatica HOM05D014097 ORTHO05D400687 1.6e-10 71.6 66 62.1
SGA_v2.0_scaffold24G10344 Striga asiatica HOM05D014097 ORTHO05D399150 1.7e-09 68.2 54 68.5
Oeu051269.2 Olea europaea HOM05D001302 ORTHO05D001107 1.9e-08 64.7 120 40.0
Lj4P697T15 Lonicera japonica HOM05D001302 ORTHO05D001107 3.3e-08 63.9 35 85.7
SGA_v2.0_scaffold44G16747 Striga asiatica HOM05D053020 ORTHO05D403873 4.3e-08 63.5 298 24.5
SGA_v2.0_scaffold48G17998 Striga asiatica HOM05D001302 ORTHO05D001107 4.3e-08 63.5 35 94.3
Oeu002055.1 Olea europaea HOM05D001302 ORTHO05D001107 1.6e-07 61.6 120 41.7
HPP92_004424 Vanilla planifolia HOM05D001302 ORTHO05D001107 2.1e-07 61.2 123 36.6
Migut.N03214 Erythranthe guttata HOM05D001302 ORTHO05D001107 2.8e-07 60.8 28 96.4
Oeu011948.1 Olea europaea HOM05D001302 ORTHO05D001107 2.8e-07 60.8 39 76.9
CAN.G268.25 Capsicum annuum HOM05D001302 ORTHO05D001107 4.7e-07 60.1 35 82.9
DCAR_001138 Daucus carota HOM05D001302 ORTHO05D001107 4.7e-07 60.1 35 82.9
Nitab4.5_0001062g0050 Nicotiana tabacum HOM05D001302 ORTHO05D001107 4.7e-07 60.1 35 82.9
Nitab4.5_0002452g0020 Nicotiana tabacum HOM05D001302 ORTHO05D001107 4.7e-07 60.1 35 82.9
Peaxi162Scf00599g00043 Petunia axillaris HOM05D001302 ORTHO05D001107 4.7e-07 60.1 35 82.9
Solyc04g071480.1 Solanum lycopersicum HOM05D001302 ORTHO05D001107 4.7e-07 60.1 35 82.9
Sopen04g027440 Solanum pennellii HOM05D001302 ORTHO05D001107 4.7e-07 60.1 35 82.9
Migut.C00997 Erythranthe guttata HOM05D001302 ORTHO05D001107 1.4e-06 58.5 27 96.3
SGA_v2.0_scaffold24G10345 Striga asiatica HOM05D014097 ORTHO05D403887 1.4e-06 58.5 125 36.8
Atru.chr13.2100 Acer truncatum HOM05D001302 ORTHO05D001107 1.8e-06 58.2 35 82.9
Nitab4.5_0004505g0010 Nicotiana tabacum HOM05D001302 ORTHO05D001107 1.8e-06 58.2 35 80.0
SalBow7G1267 Salvia bowleyana HOM05D001302 ORTHO05D001107 1.8e-06 58.2 67 49.3
Lj7P374T12 Lonicera japonica HOM05D001302 ORTHO05D001107 2.3e-06 57.8 28 89.3
Nitab4.5_0002487g0010 Nicotiana tabacum HOM05D001302 ORTHO05D001107 2.3e-06 57.8 35 80.0
MSTRG.22365 Avicennia marina HOM05D001302 ORTHO05D001107 3.1e-06 57.4 35 80.0
SalBow7G4056 Salvia bowleyana HOM05D001302 ORTHO05D001107 3.1e-06 57.4 67 49.3
unitig_748.g7704 Utricularia gibba HOM05D001302 ORTHO05D001107 3.1e-06 57.4 126 31.0
Peaxi162Scf01294g00015 Petunia axillaris HOM05D001302 ORTHO05D001107 4.0e-06 57.0 35 77.1
CSS0010365 Camellia sinensis var. sinensis HOM05D001302 ORTHO05D001107 5.2e-06 56.6 35 80.0
CSS0014526 Camellia sinensis var. sinensis HOM05D001302 ORTHO05D001107 5.2e-06 56.6 35 80.0
CAN.G18.13 Capsicum annuum HOM05D001302 ORTHO05D001107 5.2e-06 56.6 35 77.1
Gohir.A05G270300 Gossypium hirsutum HOM05D001302 ORTHO05D001107 5.2e-06 56.6 35 80.0
Gohir.D05G272400 Gossypium hirsutum HOM05D001302 ORTHO05D001107 5.2e-06 56.6 35 80.0
Gorai.009G285400 Gossypium raimondii HOM05D001302 ORTHO05D001107 5.2e-06 56.6 35 80.0
SalBow6G4474 Salvia bowleyana HOM05D001302 ORTHO05D001107 5.2e-06 56.6 27 92.6
Solyc12g056550.1 Solanum lycopersicum HOM05D001302 ORTHO05D001107 5.2e-06 56.6 35 77.1
Sopen12g029160 Solanum pennellii HOM05D001302 ORTHO05D001107 5.2e-06 56.6 35 77.1
PGSC0003DMG400024100 Solanum tuberosum HOM05D001302 ORTHO05D001107 5.2e-06 56.6 35 80.0
PGSC0003DMG401010796 Solanum tuberosum HOM05D001302 ORTHO05D001107 5.2e-06 56.6 35 77.1
TAR250G0001 Trochodendron aralioides HOM05D001302 ORTHO05D001107 5.2e-06 56.6 36 80.6
COL.COLO4_08564 Corchorus olitorius HOM05D001302 ORTHO05D001107 6.8e-06 56.2 36 77.8
Duzib041G0708 Durio zibethinus HOM05D001302 ORTHO05D001107 6.8e-06 56.2 36 77.8
Duzib116G0316 Durio zibethinus HOM05D001302 ORTHO05D001107 6.8e-06 56.2 36 77.8
Thecc.08G153300 Theobroma cacao HOM05D001302 ORTHO05D001107 6.8e-06 56.2 36 77.8
Actinidia17790 Actinidia chinensis HOM05D001302 ORTHO05D001107 8.9e-06 55.8 35 80.0
Ciclev10001440m.g Citrus clementina HOM05D001302 ORTHO05D001107 8.9e-06 55.8 36 75.0
Cc10_g14410 Coffea canephora HOM05D001302 ORTHO05D001107 8.9e-06 55.8 35 80.0
SalBow6G7089 Salvia bowleyana HOM05D001302 ORTHO05D001107 8.9e-06 55.8 145 31.0


User provided reference genes

Program Settings