Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold24G10292 Striga asiatica HOM05D003420 ORTHO05D003970 1.3e-140 503.1 264 100.0
SGA_v2.0_scaffold48G18027 Striga asiatica HOM05D003420 ORTHO05D003970 8.3e-74 281.2 291 62.9
Oeu027630.1 Olea europaea HOM05D003420 ORTHO05D003970 3.6e-69 265.8 284 59.5
Prupe.4G277400 Prunus persica HOM05D003420 ORTHO05D003970 5.2e-68 261.9 268 60.4
RcHm_v2.0_Chr3g0482841 Rosa chinensis HOM05D003420 ORTHO05D003970 1.3e-66 257.3 258 60.5
VMungo0331G1041 Vigna mungo HOM05D003420 ORTHO05D003970 1.3e-66 257.3 257 60.3
Eucgr.F04156 Eucalyptus grandis HOM05D003420 ORTHO05D003970 3.7e-66 255.8 274 58.8
TAR625G1262 Trochodendron aralioides HOM05D003420 ORTHO05D003970 3.7e-66 255.8 291 56.0
Cc10_g06190 Coffea canephora HOM05D003420 ORTHO05D003970 4.9e-66 255.4 257 61.5
Hma1.2p1_0276F.1_g111220 Hydrangea macrophylla HOM05D003420 ORTHO05D003970 6.4e-66 255.0 258 61.6
TWI32G0430 Tripterygium wilfordii HOM05D003420 ORTHO05D003970 6.4e-66 255.0 274 58.8
FAN05G2825 Fragaria x ananassa HOM05D003420 ORTHO05D003970 8.3e-66 254.6 250 60.8
MD14G1071700 Malus domestica HOM05D003420 ORTHO05D003970 8.3e-66 254.6 292 55.5
Manes.18G097100 Manihot esculenta HOM05D003420 ORTHO05D003970 8.3e-66 254.6 291 56.7
Phvul.010G082700 Phaseolus vulgaris HOM05D003420 ORTHO05D003970 1.1e-65 254.2 257 59.5
PSO210G4421 Papaver somniferum HOM05D003420 ORTHO05D003970 1.4e-65 253.8 291 55.3
PSO447G0346 Papaver somniferum HOM05D003420 ORTHO05D003970 1.4e-65 253.8 291 55.3
CSS0008854 Camellia sinensis var. sinensis HOM05D003420 ORTHO05D003970 2.4e-65 253.1 291 56.4
Glyma.01G140600 Glycine max HOM05D003420 ORTHO05D003970 2.4e-65 253.1 291 55.3
Lalb_Chr19g0129871 Lupinus albus HOM05D003420 ORTHO05D003970 2.4e-65 253.1 258 58.5
Glyma.03G026900 Glycine max HOM05D003420 ORTHO05D003970 3.2e-65 252.7 291 55.3
Atru.chr6.1390 Acer truncatum HOM05D003420 ORTHO05D003970 4.1e-65 252.3 258 58.5
Rhsim05G0166700 Rhododendron simsii HOM05D003420 ORTHO05D003970 4.1e-65 252.3 258 60.1
CiPaw.15G007400 Carya illinoinensis HOM05D003420 ORTHO05D003970 1.6e-64 250.4 291 56.0
QL05p025121 Quercus lobata HOM05D003420 ORTHO05D003970 1.6e-64 250.4 291 55.7
CSS0045751 Camellia sinensis var. sinensis HOM05D003420 ORTHO05D003970 2.0e-64 250.0 273 57.9
GSVIVG01038535001 Vitis vinifera HOM05D003420 ORTHO05D003970 2.0e-64 250.0 274 57.3
Ciclev10000376m.g Citrus clementina HOM05D003420 ORTHO05D003970 2.7e-64 249.6 274 57.3
Lj4g0005231 Lotus japonicus HOM05D003420 ORTHO05D003970 2.7e-64 249.6 291 54.3
Lalb_Chr01g0009891 Lupinus albus HOM05D003420 ORTHO05D003970 2.7e-64 249.6 257 58.0
Thecc.01G140700 Theobroma cacao HOM05D003420 ORTHO05D003970 2.7e-64 249.6 274 57.3
GSVIVG01022846001 Vitis vinifera HOM05D003420 ORTHO05D003970 2.7e-64 249.6 291 55.3
Sabra13G0099500 Salix brachista HOM05D003420 ORTHO05D003970 3.5e-64 249.2 274 56.9
FvH4_6g24280 Fragaria vesca HOM05D003420 ORTHO05D003970 4.6e-64 248.8 258 58.9
PGR102G1634 Punica granatum HOM05D003420 ORTHO05D003970 4.6e-64 248.8 273 56.8
Potri.019G088100 Populus trichocarpa HOM05D003420 ORTHO05D003970 6.0e-64 248.4 291 54.3
Medtr4g024570 Medicago truncatula HOM05D003420 ORTHO05D003970 7.8e-64 248.1 258 57.0
QL05p046655 Quercus lobata HOM05D003420 ORTHO05D003970 7.8e-64 248.1 291 55.3
Migut.C00145 Erythranthe guttata HOM05D003420 ORTHO05D003970 1.0e-63 247.7 283 56.5
Duzib187G1187 Durio zibethinus HOM05D003420 ORTHO05D003970 1.3e-63 247.3 275 57.5
FAN02G2135 Fragaria x ananassa HOM05D003420 ORTHO05D003970 1.3e-63 247.3 258 58.1
THA.LOC104800101 Tarenaya hassleriana HOM05D003420 ORTHO05D003970 1.3e-63 247.3 274 57.3
Aqoxy2G01386 Aquilegia oxysepala HOM05D003420 ORTHO05D003970 1.7e-63 246.9 261 59.0
Cfa018227 Carpinus fangiana HOM05D003420 ORTHO05D003970 1.7e-63 246.9 291 55.3
Gohir.D10G107600 Gossypium hirsutum HOM05D003420 ORTHO05D003970 2.3e-63 246.5 258 58.1
Gorai.011G117900 Gossypium raimondii HOM05D003420 ORTHO05D003970 2.3e-63 246.5 258 58.1
Potri.013G117400 Populus trichocarpa HOM05D003420 ORTHO05D003970 3.0e-63 246.1 289 53.6
Peaxi162Scf00226g00925 Petunia axillaris HOM05D003420 ORTHO05D003970 5.0e-63 245.4 253 58.5
Atru.chr13.1894 Acer truncatum HOM05D003420 ORTHO05D003970 6.6e-63 245.0 292 54.8
CANSAT25G1859 Cannabis sativa HOM05D003420 ORTHO05D003970 6.6e-63 245.0 274 56.6
ClCG08G008720 Citrullus lanatus HOM05D003420 ORTHO05D003970 6.6e-63 245.0 274 56.6
CsaV3_6G004750 Cucumis sativus L. HOM05D003420 ORTHO05D003970 8.6e-63 244.6 257 58.0
Sopen04g028480 Solanum pennellii HOM05D003420 ORTHO05D003970 8.6e-63 244.6 253 58.9
Migut.C00172 Erythranthe guttata HOM05D003420 ORTHO05D003970 1.1e-62 244.2 281 56.9
Psat7g231160 Pisum sativum HOM05D003420 ORTHO05D003970 1.1e-62 244.2 258 57.0
Actinidia22448 Actinidia chinensis HOM05D003420 ORTHO05D003970 1.5e-62 243.8 275 57.1
FAN14G5243 Fragaria x ananassa HOM05D003420 ORTHO05D003970 1.5e-62 243.8 258 58.1
Gohir.A10G068000 Gossypium hirsutum HOM05D003420 ORTHO05D003970 1.9e-62 243.4 258 57.4
MSTRG.963 Avicennia marina HOM05D003420 ORTHO05D003970 2.5e-62 243.0 259 58.3
Sed0005269 Sechium edule HOM05D003420 ORTHO05D003970 2.5e-62 243.0 287 54.7
Solyc04g072290.3 Solanum lycopersicum HOM05D003420 ORTHO05D003970 2.5e-62 243.0 253 58.5
Nitab4.5_0001307g0060 Nicotiana tabacum HOM05D003420 ORTHO05D003970 3.3e-62 242.7 253 58.9
Actinidia15626 Actinidia chinensis HOM05D003420 ORTHO05D003970 4.3e-62 242.3 255 58.8
BcaC08g45755 Brassica carinata HOM05D003420 ORTHO05D003970 5.6e-62 241.9 260 57.3
BolC6t38641H Brassica oleracea HOM05D003420 ORTHO05D003970 5.6e-62 241.9 260 57.3
BraA07t30693Z Brassica rapa HOM05D003420 ORTHO05D003970 5.6e-62 241.9 260 57.3
Oeu042182.1 Olea europaea HOM05D003420 ORTHO05D003970 5.6e-62 241.9 267 58.4
Thhalv10018180m.g Eutrema salsugineum HOM05D003420 ORTHO05D003970 7.3e-62 241.5 260 57.3
Nitab4.5_0002608g0090 Nicotiana tabacum HOM05D003420 ORTHO05D003970 7.3e-62 241.5 253 58.5
A07p30580 Brassica napus HOM05D003420 ORTHO05D003970 9.5e-62 241.1 260 57.3
AT1G71820 Arabidopsis thaliana HOM05D003420 ORTHO05D003970 1.6e-61 240.4 260 56.9
BcaC08g46613 Brassica carinata HOM05D003420 ORTHO05D003970 2.1e-61 240.0 260 56.9
A07p37970 Brassica napus HOM05D003420 ORTHO05D003970 2.1e-61 240.0 260 56.9
C06p45890 Brassica napus HOM05D003420 ORTHO05D003970 2.1e-61 240.0 260 56.9
BolC6t39641H Brassica oleracea HOM05D003420 ORTHO05D003970 2.1e-61 240.0 260 56.9
BraA07t31362Z Brassica rapa HOM05D003420 ORTHO05D003970 2.1e-61 240.0 260 56.9
CAN.G1010.15 Capsicum annuum HOM05D003420 ORTHO05D003970 2.8e-61 239.6 253 58.9
BcaB03g15619 Brassica carinata HOM05D003420 ORTHO05D003970 4.7e-61 238.8 260 56.9
Carub.0002s1858 Capsella rubella HOM05D003420 ORTHO05D003970 4.7e-61 238.8 286 53.5
Sp5g26850 Schrenkiella parvula HOM05D003420 ORTHO05D003970 4.7e-61 238.8 260 56.9
SpUn0020_0120 Schrenkiella parvula HOM05D003420 ORTHO05D003970 4.7e-61 238.8 260 56.9
TPR.G31331 Trifolium pratense HOM05D003420 ORTHO05D003970 6.2e-61 238.4 255 55.3
AL2G31400 Arabidopsis lyrata HOM05D003420 ORTHO05D003970 8.1e-61 238.0 260 56.2
MBI05_g43692_MAGBIO Magnolia biondii HOM05D003420 ORTHO05D003970 1.1e-60 237.7 274 55.5
QL02p034947 Quercus lobata HOM05D003420 ORTHO05D003970 1.4e-60 237.3 259 57.9
Sc02g0003530 Simmondsia chinensis HOM05D003420 ORTHO05D003970 1.4e-60 237.3 293 53.6
Aa31LG4G8810 Aethionema arabicum HOM05D003420 ORTHO05D003970 2.3e-60 236.5 286 53.5
C06p35360 Brassica napus HOM05D003420 ORTHO05D003970 4.0e-60 235.7 260 56.9
Sabra19G0098400 Salix brachista HOM05D003420 ORTHO05D003970 5.2e-60 235.3 356 46.1
Sabra19G0101900 Salix brachista HOM05D003420 ORTHO05D003970 5.2e-60 235.3 356 46.1
Ciclev10000395m.g Citrus clementina HOM05D003420 ORTHO05D003970 6.8e-60 235.0 291 52.9
Manes.02G187400 Manihot esculenta HOM05D003420 ORTHO05D003970 2.0e-59 233.4 257 56.0
CiPaw.15G007500 Carya illinoinensis HOM05D003420 ORTHO05D003970 4.4e-59 232.3 274 55.1
HanXRQChr10g0278771 Helianthus annuus HOM05D003420 ORTHO05D003970 9.8e-59 231.1 257 57.6
CDE04G0884 Ceratophyllum demersum HOM05D003420 ORTHO05D003970 2.9e-58 229.6 259 55.2
arahy.Tifrunner.gnm1.ann1.GQ31QR Arachis hypogaea HOM05D003420 ORTHO05D003970 8.3e-58 228.0 270 54.4
arahy.Tifrunner.gnm1.ann1.PV9APJ Arachis hypogaea HOM05D003420 ORTHO05D003970 8.3e-58 228.0 270 54.4
Lsat_1_v5_gn_6_100921 Lactuca sativa HOM05D003420 ORTHO05D003970 8.3e-58 228.0 258 55.4
ECA246G4467 Erigeron canadensis HOM05D003420 ORTHO05D003970 1.1e-57 227.6 258 55.0
MBI05_g36592_MAGBIO Magnolia biondii HOM05D003420 ORTHO05D003970 1.1e-57 227.6 274 53.3
COL.COLO4_12104 Corchorus olitorius HOM05D003420 ORTHO05D003970 1.4e-57 227.3 306 50.7
ATR0815G027 Amborella trichopoda HOM05D003420 ORTHO05D003970 3.2e-57 226.1 289 50.2
Nn8g40471 Nelumbo nucifera HOM05D003420 ORTHO05D003970 4.6e-56 222.2 304 50.0
EL10Ac8g19742 Beta vulgaris HOM05D003420 ORTHO05D003970 6.0e-56 221.9 251 53.0
Ah.09g232700 Amaranthus hybridus HOM05D003420 ORTHO05D003970 1.3e-55 220.7 255 53.3
HPP92_002340 Vanilla planifolia HOM05D003420 ORTHO05D003970 1.4e-52 210.7 275 50.9
HanXRQChr10g0278751 Helianthus annuus HOM05D003420 ORTHO05D003970 2.0e-51 206.8 249 51.8
TWI32G0245 Tripterygium wilfordii HOM05D003420 ORTHO05D003970 4.4e-51 205.7 184 66.3
Lj4C710T4 Lonicera japonica HOM05D003420 ORTHO05D003970 3.7e-50 202.6 165 70.3
CARHR290960 Cardamine hirsuta HOM05D003420 ORTHO05D003970 2.1e-48 196.8 165 66.1
Atru.chr7.57 Acer truncatum HOM05D003420 ORTHO05D003970 6.0e-48 195.3 176 63.1
MBI02_g44124_MAGBIO Magnolia biondii HOM05D003420 ORTHO05D003970 3.0e-47 193.0 274 50.0
unitig_46.g18008 Utricularia gibba HOM05D003420 ORTHO05D003970 3.4e-43 179.5 234 51.7
DCAR_009600 Daucus carota HOM05D003420 ORTHO05D003970 4.4e-43 179.1 256 51.2
DCAR_013169 Daucus carota HOM05D003420 ORTHO05D003970 5.8e-43 178.7 220 52.7
Pp3c8_3920 Physcomitrium patens HOM05D003420 ORTHO05D003970 9.9e-43 177.9 248 47.2
Hund17515 Selenicereus undatus HOM05D003420 ORTHO05D003970 3.8e-42 176.0 242 48.3
ATR0824G022 Amborella trichopoda HOM05D003420 ORTHO05D003970 1.6e-40 170.6 178 56.2
Mapoly0001s0359 Marchantia polymorpha HOM05D003420 ORTHO05D003970 2.7e-40 169.9 294 41.8
Cpa.g.sc88.64 Carica papaya HOM05D003420 ORTHO05D003970 2.3e-39 166.8 123 77.2
HanXRQChr01g0002061 Helianthus annuus HOM05D003420 ORTHO05D003970 2.3e-39 166.8 311 42.4
SMO298G0019 Selaginella moellendorffii HOM05D003420 ORTHO05D003970 2.5e-38 163.3 249 44.2
MBI05_g36581_MAGBIO Magnolia biondii HOM05D003420 ORTHO05D003970 5.6e-38 162.2 274 43.4
AagrBONN_evm.TU.Sc2ySwM_228.2748 Anthoceros agrestis HOM05D003420 ORTHO05D003970 1.6e-37 160.6 262 42.4
Atru.chr13.1960 Acer truncatum HOM05D003420 ORTHO05D003970 4.0e-36 156.0 128 70.3
Ca_19960_v3 Cicer arietinum L. HOM05D003420 ORTHO05D003970 5.3e-36 155.6 97 85.6
MBI02_g35947_MAGBIO Magnolia biondii HOM05D003420 ORTHO05D003970 2.2e-34 150.2 274 43.4
SHI09125 Sapria himalayana HOM05D003420 ORTHO05D003970 2.7e-32 143.3 124 65.3
vmacro11080 Vaccinium macrocarpon HOM05D003420 ORTHO05D003970 2.7e-32 143.3 167 55.1
AagrBONN_evm.TU.Sc2ySwM_117.1499 Anthoceros agrestis HOM05D003420 ORTHO05D003970 4.3e-30 136.0 263 38.8
AUR62027528 Chenopodium quinoa HOM05D003420 ORTHO05D003970 4.3e-30 136.0 257 41.2
AUR62030227 Chenopodium quinoa HOM05D003420 ORTHO05D003970 4.3e-30 136.0 257 41.2
CBR_g30506 Chara braunii HOM05D003420 ORTHO05D003970 5.6e-30 135.6 285 37.9
MELO3C019945.2 Cucumis melo HOM05D003420 ORTHO05D003970 7.4e-30 135.2 251 43.0
Hma1.2p1_1261F.1_g271140 Hydrangea macrophylla HOM05D003420 ORTHO05D003970 6.0e-24 115.5 65 92.3
GSVIVG01022862001 Vitis vinifera HOM05D003420 ORTHO05D003970 1.3e-21 107.8 65 83.1
CANSAT56G3946 Cannabis sativa HOM05D003420 ORTHO05D003970 1.7e-18 97.4 66 78.8
Zm00001eb254950 Zea mays HOM05D003420 ORTHO05D003970 2.5e-17 93.6 149 43.0
Psat4g195800 Pisum sativum HOM05D003420 ORTHO05D003970 9.3e-17 91.7 184 37.0
RcHm_v2.0_Chr1g0335071 Rosa chinensis HOM05D003420 ORTHO05D003970 7.4e-14 82.0 71 70.4
Glyma.03G026300 Glycine max HOM05D003420 ORTHO05D003970 6.3e-13 79.0 64 64.1
vmacro11081 Vaccinium macrocarpon HOM05D003420 ORTHO05D003970 8.2e-13 78.6 63 66.7
Actinidia06762 Actinidia chinensis HOM05D003420 ORTHO05D003970 1.4e-12 77.8 46 84.8
Glyma.03G026400 Glycine max HOM05D003420 ORTHO05D003970 1.4e-12 77.8 64 64.1
Glyma.03G026100 Glycine max HOM05D003420 ORTHO05D003970 9.0e-12 75.1 63 61.9
Ca_19959_v3 Cicer arietinum L. HOM05D003420 ORTHO05D003970 1.2e-11 74.7 69 59.4
RcHm_v2.0_Chr1g0335061 Rosa chinensis HOM05D003420 ORTHO05D003970 7.6e-11 72.0 103 43.7
CARHR290950 Cardamine hirsuta HOM05D003420 ORTHO05D003970 1.0e-10 71.6 55 65.5
Actinidia22371 Actinidia chinensis HOM05D003420 ORTHO05D003970 3.2e-09 66.6 64 60.9
MBI01_g21241_MAGBIO Magnolia biondii HOM05D003420 ORTHO05D003970 3.9e-07 59.7 63 57.1
RcHm_v2.0_Chr2g0113821 Rosa chinensis HOM05D003420 ORTHO05D003970 8.7e-07 58.5 31 87.1
SHI09126 Sapria himalayana HOM05D003420 ORTHO05D003970 1.1e-06 58.2 47 57.4
Cre17.g744847 Chlamydomonas reinhardtii HOM05D003420 ORTHO05D003970 4.3e-06 56.2 228 25.4
ClCG08G008060 Citrullus lanatus HOM05D003420 ORTHO05D003970 7.4e-06 55.5 65 50.8


User provided reference genes

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