Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold24G10288 Striga asiatica HOM05D004191 ORTHO05D004887 3.3e-101 371.7 187 100.0
SGA_v2.0_scaffold416G51230 Striga asiatica HOM05D004191 ORTHO05D004887 2.9e-97 358.6 187 94.1
SalBow7G2717 Salvia bowleyana HOM05D004191 ORTHO05D004887 5.5e-96 354.4 187 93.0
Migut.H01854 Erythranthe guttata HOM05D004191 ORTHO05D004887 1.3e-94 349.7 187 92.0
MSTRG.12958 Avicennia marina HOM05D004191 ORTHO05D004887 1.9e-93 345.9 187 90.4
Lj3g0027602 Lotus japonicus HOM05D004191 ORTHO05D004887 3.3e-93 345.1 187 88.2
Nitab4.5_0002838g0150 Nicotiana tabacum HOM05D004191 ORTHO05D004887 5.7e-93 344.4 187 89.3
HanXRQChr02g0054141 Helianthus annuus HOM05D004191 ORTHO05D004887 7.4e-93 344.0 187 88.8
Nitab4.5_0005420g0050 Nicotiana tabacum HOM05D004191 ORTHO05D004887 7.4e-93 344.0 187 88.8
GSVIVG01002004001 Vitis vinifera HOM05D004191 ORTHO05D004887 7.4e-93 344.0 187 87.7
Lsat_1_v5_gn_7_108481 Lactuca sativa HOM05D004191 ORTHO05D004887 9.6e-93 343.6 187 88.2
Thecc.05G140700 Theobroma cacao HOM05D004191 ORTHO05D004887 9.6e-93 343.6 187 87.2
Cc05_g13280 Coffea canephora HOM05D004191 ORTHO05D004887 1.3e-92 343.2 187 86.6
MSTRG.6892 Avicennia marina HOM05D004191 ORTHO05D004887 1.6e-92 342.8 187 88.8
Ca_18852_v3 Cicer arietinum L. HOM05D004191 ORTHO05D004887 1.6e-92 342.8 187 87.7
Duzib093G1201 Durio zibethinus HOM05D004191 ORTHO05D004887 1.6e-92 342.8 187 87.2
ECA236G4841 Erigeron canadensis HOM05D004191 ORTHO05D004887 1.6e-92 342.8 187 87.7
Hma1.2p1_0049F.1_g028640 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 1.6e-92 342.8 185 89.2
Rhsim12G0150700 Rhododendron simsii HOM05D004191 ORTHO05D004887 1.6e-92 342.8 187 88.2
vmacro16476 Vaccinium macrocarpon HOM05D004191 ORTHO05D004887 1.6e-92 342.8 187 88.8
COL.COLO4_05062 Corchorus olitorius HOM05D004191 ORTHO05D004887 2.1e-92 342.4 187 87.7
PGSC0003DMG400005405 Solanum tuberosum HOM05D004191 ORTHO05D004887 3.7e-92 341.7 187 87.7
CAN.G134.12 Capsicum annuum HOM05D004191 ORTHO05D004887 4.8e-92 341.3 187 87.7
Dinv40713 Davidia involucrata HOM05D004191 ORTHO05D004887 4.8e-92 341.3 187 87.7
Oeu032442.1 Olea europaea HOM05D004191 ORTHO05D004887 4.8e-92 341.3 187 88.8
CiPaw.11G184500 Carya illinoinensis HOM05D004191 ORTHO05D004887 6.2e-92 340.9 187 87.2
CiPaw.12G126500 Carya illinoinensis HOM05D004191 ORTHO05D004887 8.2e-92 340.5 187 86.6
MBI02_g10101_MAGBIO Magnolia biondii HOM05D004191 ORTHO05D004887 8.2e-92 340.5 187 86.1
QL08p013180 Quercus lobata HOM05D004191 ORTHO05D004887 8.2e-92 340.5 186 86.0
arahy.Tifrunner.gnm1.ann1.HY89VY Arachis hypogaea HOM05D004191 ORTHO05D004887 1.1e-91 340.1 187 86.1
CSS0034391 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 1.1e-91 340.1 187 88.2
Lj1A865T18 Lonicera japonica HOM05D004191 ORTHO05D004887 1.1e-91 340.1 187 87.2
MD11G1225200 Malus domestica HOM05D004191 ORTHO05D004887 1.1e-91 340.1 187 86.6
CANSAT80G0944 Cannabis sativa HOM05D004191 ORTHO05D004887 1.4e-91 339.7 187 86.6
Duzib106G0849 Durio zibethinus HOM05D004191 ORTHO05D004887 1.4e-91 339.7 187 86.1
Manes.03G123300 Manihot esculenta HOM05D004191 ORTHO05D004887 1.4e-91 339.7 187 86.6
FvH4_3g21920 Fragaria vesca HOM05D004191 ORTHO05D004887 1.8e-91 339.3 187 85.6
FAN16G1028 Fragaria x ananassa HOM05D004191 ORTHO05D004887 1.8e-91 339.3 187 85.6
Oeu007633.1 Olea europaea HOM05D004191 ORTHO05D004887 1.8e-91 339.3 196 85.7
RcHm_v2.0_Chr5g0037731 Rosa chinensis HOM05D004191 ORTHO05D004887 1.8e-91 339.3 187 85.6
THA.LOC104799884 Tarenaya hassleriana HOM05D004191 ORTHO05D004887 1.8e-91 339.3 187 86.1
arahy.Tifrunner.gnm1.ann1.B9KZG1 Arachis hypogaea HOM05D004191 ORTHO05D004887 2.4e-91 339.0 187 86.1
Peaxi162Scf00082g00016 Petunia axillaris HOM05D004191 ORTHO05D004887 2.4e-91 339.0 187 86.6
Potri.001G418400 Populus trichocarpa HOM05D004191 ORTHO05D004887 2.4e-91 339.0 187 87.2
MD03G1210500 Malus domestica HOM05D004191 ORTHO05D004887 3.1e-91 338.6 187 86.1
Sabra16G0284100 Salix brachista HOM05D004191 ORTHO05D004887 3.1e-91 338.6 187 86.6
Hund11592 Selenicereus undatus HOM05D004191 ORTHO05D004887 3.1e-91 338.6 187 86.1
Migut.M01809 Erythranthe guttata HOM05D004191 ORTHO05D004887 4.1e-91 338.2 181 90.1
FAN21G0017 Fragaria x ananassa HOM05D004191 ORTHO05D004887 4.1e-91 338.2 187 85.0
Gohir.A09G118400 Gossypium hirsutum HOM05D004191 ORTHO05D004887 4.1e-91 338.2 187 85.6
Gohir.D09G115300 Gossypium hirsutum HOM05D004191 ORTHO05D004887 4.1e-91 338.2 187 85.6
Gorai.006G132900 Gossypium raimondii HOM05D004191 ORTHO05D004887 4.1e-91 338.2 187 85.6
Solyc10g006490.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 4.1e-91 338.2 187 86.1
TAR371G0103 Trochodendron aralioides HOM05D004191 ORTHO05D004887 4.1e-91 338.2 187 85.6
Cpa.g.sc97.62 Carica papaya HOM05D004191 ORTHO05D004887 5.3e-91 337.8 187 85.0
FAN25G1832 Fragaria x ananassa HOM05D004191 ORTHO05D004887 5.3e-91 337.8 187 84.5
Medtr4g081170 Medicago truncatula HOM05D004191 ORTHO05D004887 5.3e-91 337.8 187 86.6
Prupe.4G204700 Prunus persica HOM05D004191 ORTHO05D004887 5.3e-91 337.8 187 85.0
PGR031G0276 Punica granatum HOM05D004191 ORTHO05D004887 5.3e-91 337.8 182 87.9
Lalb_Chr19g0134771 Lupinus albus HOM05D004191 ORTHO05D004887 6.9e-91 337.4 187 85.6
Solyc01g096530.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 6.9e-91 337.4 187 86.6
Sopen01g040260 Solanum pennellii HOM05D004191 ORTHO05D004887 6.9e-91 337.4 187 87.2
Lalb_Chr03g0030141 Lupinus albus HOM05D004191 ORTHO05D004887 1.5e-90 336.3 187 84.5
TPR.G24299 Trifolium pratense HOM05D004191 ORTHO05D004887 1.5e-90 336.3 186 86.6
TWI39G0061 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 1.5e-90 336.3 187 85.6
TAR626G0300 Trochodendron aralioides HOM05D004191 ORTHO05D004887 1.5e-90 336.3 187 85.0
unitig_0.g2386 Utricularia gibba HOM05D004191 ORTHO05D004887 1.5e-90 336.3 183 89.6
Actinidia34670 Actinidia chinensis HOM05D004191 ORTHO05D004887 2.0e-90 335.9 187 86.1
ATR0609G026 Amborella trichopoda HOM05D004191 ORTHO05D004887 2.0e-90 335.9 187 84.5
AT5G54750 Arabidopsis thaliana HOM05D004191 ORTHO05D004887 2.6e-90 335.5 187 84.5
CSS0028201 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 2.6e-90 335.5 187 86.6
TPR.G25893 Trifolium pratense HOM05D004191 ORTHO05D004887 2.6e-90 335.5 187 86.1
VMungo1127G0852 Vigna mungo HOM05D004191 ORTHO05D004887 3.4e-90 335.1 187 85.0
AL8G30180 Arabidopsis lyrata HOM05D004191 ORTHO05D004887 4.5e-90 334.7 187 84.5
Ciclev10009626m.g Citrus clementina HOM05D004191 ORTHO05D004887 4.5e-90 334.7 187 84.5
PSO675G8300 Papaver somniferum HOM05D004191 ORTHO05D004887 5.8e-90 334.3 187 83.4
Aqoxy4G00334 Aquilegia oxysepala HOM05D004191 ORTHO05D004887 7.6e-90 334.0 187 84.0
Thhalv10019192m.g Eutrema salsugineum HOM05D004191 ORTHO05D004887 7.6e-90 334.0 187 84.0
Glyma.06G269400 Glycine max HOM05D004191 ORTHO05D004887 7.6e-90 334.0 187 85.0
Glyma.12G135200 Glycine max HOM05D004191 ORTHO05D004887 7.6e-90 334.0 187 85.0
Sed0000628 Sechium edule HOM05D004191 ORTHO05D004887 7.6e-90 334.0 187 85.0
Zm00001eb067130 Zea mays HOM05D004191 ORTHO05D004887 1.0e-89 333.6 185 84.3
Zm00001eb433090 Zea mays HOM05D004191 ORTHO05D004887 1.0e-89 333.6 185 84.3
Aa31LG3G10650 Aethionema arabicum HOM05D004191 ORTHO05D004887 1.3e-89 333.2 187 83.4
Phvul.011G139700 Phaseolus vulgaris HOM05D004191 ORTHO05D004887 1.3e-89 333.2 187 84.5
Carub.0008s1502 Capsella rubella HOM05D004191 ORTHO05D004887 1.7e-89 332.8 187 83.4
CARHR268090 Cardamine hirsuta HOM05D004191 ORTHO05D004887 1.7e-89 332.8 187 83.4
MELO3C018102.2 Cucumis melo HOM05D004191 ORTHO05D004887 1.7e-89 332.8 187 85.0
CsaV3_3G023130 Cucumis sativus L. HOM05D004191 ORTHO05D004887 1.7e-89 332.8 187 85.0
Eucgr.F03430 Eucalyptus grandis HOM05D004191 ORTHO05D004887 1.7e-89 332.8 184 85.3
Ah.02g116780 Amaranthus hybridus HOM05D004191 ORTHO05D004887 3.8e-89 331.6 187 83.4
Sc22g0000820 Simmondsia chinensis HOM05D004191 ORTHO05D004887 3.8e-89 331.6 187 84.5
CAN.G1110.10 Capsicum annuum HOM05D004191 ORTHO05D004887 5.0e-89 331.3 201 81.1
HPP92_013205 Vanilla planifolia HOM05D001003 ORTHO05D004887 5.0e-89 331.3 186 83.3
Medtr8g027700 Medicago truncatula HOM05D004191 ORTHO05D004887 6.5e-89 330.9 187 84.5
SpUn0117_0020 Schrenkiella parvula HOM05D004191 ORTHO05D004887 6.5e-89 330.9 187 82.9
Sed0012224 Sechium edule HOM05D004191 ORTHO05D004887 6.5e-89 330.9 187 85.0
EL10Ac5g13057 Beta vulgaris HOM05D004191 ORTHO05D004887 1.1e-88 330.1 187 82.9
FAN11G1314 Fragaria x ananassa HOM05D004191 ORTHO05D004887 1.1e-88 330.1 200 80.0
BcaB07g31034 Brassica carinata HOM05D004191 ORTHO05D004887 1.4e-88 329.7 187 82.4
A09p20070 Brassica napus HOM05D004191 ORTHO05D004887 1.4e-88 329.7 187 82.4
C09p25460 Brassica napus HOM05D004191 ORTHO05D004887 1.4e-88 329.7 187 82.4
BraA09t37620Z Brassica rapa HOM05D004191 ORTHO05D004887 1.4e-88 329.7 187 82.4
Sp4g10480 Schrenkiella parvula HOM05D004191 ORTHO05D004887 3.2e-88 328.6 187 82.4
ATR0109G002 Amborella trichopoda HOM05D004191 ORTHO05D004887 5.5e-88 327.8 187 82.9
PSO170G1932 Papaver somniferum HOM05D004191 ORTHO05D004887 5.5e-88 327.8 187 81.8
CDE02G0163 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 7.1e-88 327.4 187 82.9
Os03g0402000 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 1.2e-87 326.6 182 83.5
Os07g0642300 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 1.2e-87 326.6 182 83.5
Sopen10g002440 Solanum pennellii HOM05D004191 ORTHO05D004887 1.2e-87 326.6 206 78.6
Sc15g0001730 Simmondsia chinensis HOM05D004191 ORTHO05D004887 3.5e-87 325.1 187 81.8
Eucgr.F00980 Eucalyptus grandis HOM05D004191 ORTHO05D004887 1.8e-86 322.8 187 81.3
PGR083G1136 Punica granatum HOM05D004191 ORTHO05D004887 5.1e-86 321.2 193 79.8
TWI38G1569 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 2.5e-85 318.9 208 75.5
BolC9t55449H Brassica oleracea HOM05D004191 ORTHO05D004887 3.3e-85 318.5 206 75.2
PSO782G4612 Papaver somniferum HOM05D004191 ORTHO05D004887 7.4e-85 317.4 203 75.4
arahy.Tifrunner.gnm1.ann1.T6DWBF Arachis hypogaea HOM05D004191 ORTHO05D004887 3.7e-84 315.1 187 79.7
Lsat_1_v5_gn_5_5821 Lactuca sativa HOM05D004191 ORTHO05D004887 3.7e-84 315.1 173 86.7
Hund24114 Selenicereus undatus HOM05D004191 ORTHO05D004887 5.3e-83 311.2 211 73.9
ClCG05G014740 Citrullus lanatus HOM05D004191 ORTHO05D004887 6.9e-83 310.8 241 66.4
Manes.15G076000 Manihot esculenta HOM05D004191 ORTHO05D004887 2.2e-81 305.8 186 76.9
Nn1g08677 Nelumbo nucifera HOM05D004191 ORTHO05D004887 1.1e-80 303.5 178 80.9
Mapoly0006s0106 Marchantia polymorpha HOM05D004191 ORTHO05D004887 8.8e-78 293.9 185 73.0
Eucgr.F00978 Eucalyptus grandis HOM05D004191 ORTHO05D004887 1.5e-77 293.1 169 81.7
SMO165G0074 Selaginella moellendorffii HOM05D004191 ORTHO05D004887 2.0e-77 292.7 187 71.7
AagrBONN_evm.TU.Sc2ySwM_344.5600 Anthoceros agrestis HOM05D004191 ORTHO05D004887 2.4e-75 285.8 187 69.5
AagrBONN_evm.TU.Sc2ySwM_344.5601 Anthoceros agrestis HOM05D004191 ORTHO05D004887 2.4e-75 285.8 187 69.5
Peaxi162Scf01434g00020 Petunia axillaris HOM05D004191 ORTHO05D004887 2.0e-74 282.7 187 75.4
Hma1.2p1_0774F.1_g216345 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 2.6e-74 282.3 158 86.7
AagrBONN_evm.TU.Sc2ySwM_362.1587 Anthoceros agrestis HOM05D004191 ORTHO05D004887 4.5e-74 281.6 187 68.4
Nitab4.5_0002342g0090 Nicotiana tabacum HOM05D004191 ORTHO05D004887 5.9e-74 281.2 187 73.8
CBR_g9060 Chara braunii HOM05D004191 ORTHO05D004887 8.5e-73 277.3 187 68.4
Nitab4.5_0002229g0200 Nicotiana tabacum HOM05D004191 ORTHO05D004887 1.4e-72 276.6 187 73.3
BcaB07g30600 Brassica carinata HOM05D004191 ORTHO05D004887 2.5e-72 275.8 185 73.5
Pp3c6_29730 Physcomitrium patens HOM05D004191 ORTHO05D004887 5.5e-72 274.6 180 71.7
AagrBONN_evm.TU.Sc2ySwM_344.5599 Anthoceros agrestis HOM05D004191 ORTHO05D004887 7.2e-72 274.2 172 71.5
BcaC04g21960 Brassica carinata HOM05D004191 ORTHO05D004887 1.6e-71 273.1 154 83.1
Dinv22301 Davidia involucrata HOM05D004191 ORTHO05D004887 2.1e-71 272.7 149 87.9
arahy.Tifrunner.gnm1.ann1.N3PQ25 Arachis hypogaea HOM05D004191 ORTHO05D004887 5.7e-69 264.6 187 69.5
AUR62039960 Chenopodium quinoa HOM05D004191 ORTHO05D004887 2.8e-68 262.3 148 83.1
Peaxi162Scf01475g00001 Petunia axillaris HOM05D004191 ORTHO05D004887 1.8e-67 259.6 187 69.5
Cpa.g.sc2.173 Carica papaya HOM05D004191 ORTHO05D004887 2.4e-67 259.2 214 59.3
AUR62007507 Chenopodium quinoa HOM05D004191 ORTHO05D004887 3.2e-64 248.8 158 75.9
Cre03.g145607 Chlamydomonas reinhardtii HOM05D004191 ORTHO05D004887 9.7e-61 237.3 173 61.3
Peaxi162Scf08257g00003 Petunia axillaris HOM05D004191 ORTHO05D004887 2.0e-58 229.6 187 63.1
PGSC0003DMG400029125 Solanum tuberosum HOM05D004191 ORTHO05D004887 4.5e-58 228.4 187 63.1
Sp2g07630 Schrenkiella parvula HOM05D004191 ORTHO05D004887 1.2e-55 220.3 124 83.9
AagrBONN_evm.TU.Sc2ySwM_362.1580 Anthoceros agrestis HOM05D004191 ORTHO05D004887 3.7e-52 208.8 133 72.2
PRCOL_00004686 Prasinoderma coloniale HOM05D004191 ORTHO05D004887 3.2e-48 195.7 167 53.9
Cfa020410 Carpinus fangiana HOM05D004191 ORTHO05D004887 9.4e-48 194.1 103 86.4
CDE05G2537 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 1.4e-46 190.3 106 85.8
Psat7g161320 Pisum sativum HOM05D004191 ORTHO05D004887 1.2e-45 187.2 102 86.3
TWI38G1856 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 4.4e-45 185.3 142 66.2
MCO14G457 Micromonas commoda HOM05D004191 ORTHO05D004887 7.5e-45 184.5 175 50.3
COL.COLO4_37956 Corchorus olitorius HOM05D004191 ORTHO05D004887 2.8e-44 182.6 98 84.7
AUR62030012 Chenopodium quinoa HOM05D004191 ORTHO05D004887 1.6e-42 176.8 181 55.2
SEGI_28528 Sequoiadendron giganteum HOM05D004191 ORTHO05D004887 1.2e-39 167.2 98 75.5
Nn5g28123 Nelumbo nucifera HOM05D004191 ORTHO05D004887 1.1e-35 154.1 85 85.9
HanXRQChr11g0332951 Helianthus annuus HOM05D004191 ORTHO05D004887 2.2e-28 129.8 142 52.1
Pp3c2_32190 Physcomitrium patens HOM05D004191 ORTHO05D004887 5.8e-21 105.1 68 70.6
COL.COLO4_37955 Corchorus olitorius HOM05D004191 ORTHO05D004887 1.0e-17 94.4 52 90.4
Cfa020409 Carpinus fangiana HOM05D004191 ORTHO05D004887 2.5e-16 89.7 52 82.7
Haze_09622 Corylus avellana HOM05D004191 ORTHO05D004887 2.8e-15 86.3 49 85.7
Actinidia19733 Actinidia chinensis HOM05D004191 ORTHO05D004887 2.6e-13 79.7 41 90.2
Rhsim01G0090000 Rhododendron simsii HOM05D004191 ORTHO05D004887 7.6e-13 78.2 70 62.9
Ah.12g056770 Amaranthus hybridus HOM05D004191 ORTHO05D004887 2.2e-12 76.6 68 57.4
Haze_09618 Corylus avellana HOM05D004191 ORTHO05D004887 2.9e-12 76.3 45 80.0
Medtr4g027400 Medicago truncatula HOM05D004191 ORTHO05D004887 1.1e-11 74.3 47 74.5
Ah.07g199550 Amaranthus hybridus HOM05D004191 ORTHO05D004887 5.4e-11 72.0 41 82.9
Ah.07g199480 Amaranthus hybridus HOM05D004191 ORTHO05D060174 6.0e-10 68.6 39 79.5


User provided reference genes

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