Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold249G44960 Striga asiatica HOM05D004688 ORTHO05D005490 0.0e+00 1090.1 542 100.0
SGA_v2.0_scaffold249G44962 Striga asiatica HOM05D004688 ORTHO05D406540 4.5e-42 176.8 121 71.9
Oeu037809.1 Olea europaea HOM05D004688 ORTHO05D005490 2.3e-25 121.3 102 63.7
MSTRG.1666 Avicennia marina HOM05D004688 ORTHO05D005490 2.8e-23 114.4 102 58.8
Dinv03730 Davidia involucrata HOM05D004688 ORTHO05D005490 8.0e-23 112.8 103 59.2
SalBow1G7515 Salvia bowleyana HOM05D004688 ORTHO05D005490 1.0e-22 112.5 102 59.8
MSTRG.14034 Avicennia marina HOM05D004688 ORTHO05D005490 2.3e-22 111.3 102 57.8
Cc04_g10300 Coffea canephora HOM05D004688 ORTHO05D005490 2.3e-22 111.3 103 60.2
Oeu047689.1 Olea europaea HOM05D004688 ORTHO05D005490 1.2e-21 109.0 102 58.8
Hma1.2p1_0528F.1_g173050 Hydrangea macrophylla HOM05D004688 ORTHO05D005490 1.5e-21 108.6 100 60.0
Migut.E01543 Erythranthe guttata HOM05D004688 ORTHO05D005490 2.0e-21 108.2 103 56.3
Thecc.05G223200 Theobroma cacao HOM05D004688 ORTHO05D005490 2.6e-21 107.8 91 61.5
Oeu044132.1 Olea europaea HOM05D004688 ORTHO05D005490 9.8e-21 105.9 102 58.8
Sabra19G0053300 Salix brachista HOM05D004688 ORTHO05D005490 9.8e-21 105.9 113 54.9
COL.COLO4_15125 Corchorus olitorius HOM05D004688 ORTHO05D005490 2.2e-20 104.8 91 60.4
RhsimUnG0132900 Rhododendron simsii HOM05D004688 ORTHO05D005490 3.7e-20 104.0 99 57.6
Duzib128G0049 Durio zibethinus HOM05D004688 ORTHO05D005490 4.9e-20 103.6 93 59.1
Duzib177G0832 Durio zibethinus HOM05D004688 ORTHO05D005490 1.4e-19 102.1 91 59.3
vmacro12865 Vaccinium macrocarpon HOM05D004688 ORTHO05D005490 1.4e-19 102.1 100 57.0
Gohir.A08G221644 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.8e-19 101.7 90 60.0
Gohir.D08G240400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.8e-19 101.7 90 60.0
Gorai.004G255700 Gossypium raimondii HOM05D004688 ORTHO05D005490 1.8e-19 101.7 90 60.0
TWI12G0369 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 1.8e-19 101.7 92 58.7
CiPaw.05G212300 Carya illinoinensis HOM05D004688 ORTHO05D005490 2.4e-19 101.3 91 59.3
Potri.019G042700 Populus trichocarpa HOM05D004688 ORTHO05D005490 2.4e-19 101.3 100 57.0
TWI18G0476 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 2.4e-19 101.3 94 57.4
Gohir.A02G114600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 3.2e-19 100.9 86 60.5
Atru.chr12.1856 Acer truncatum HOM05D004688 ORTHO05D005490 4.1e-19 100.5 91 57.1
Actinidia20087 Actinidia chinensis HOM05D004688 ORTHO05D005490 4.1e-19 100.5 100 54.0
arahy.Tifrunner.gnm1.ann1.8TRX11 Arachis hypogaea HOM05D004688 ORTHO05D005490 4.1e-19 100.5 90 58.9
arahy.Tifrunner.gnm1.ann1.N6YK28 Arachis hypogaea HOM05D004688 ORTHO05D005490 4.1e-19 100.5 90 58.9
CSS0035319 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 4.1e-19 100.5 101 54.5
Carub.0007s1324 Capsella rubella HOM05D004688 ORTHO05D005490 4.1e-19 100.5 89 57.3
ECA236G0885 Erigeron canadensis HOM05D004688 ORTHO05D005490 4.1e-19 100.5 93 59.1
FvH4_7g34310 Fragaria vesca HOM05D004688 ORTHO05D005490 4.1e-19 100.5 91 54.9
FAN01G2619 Fragaria x ananassa HOM05D004688 ORTHO05D005490 4.1e-19 100.5 91 54.9
FAN03G0573 Fragaria x ananassa HOM05D004688 ORTHO05D005490 4.1e-19 100.5 91 54.9
Nn1g09153 Nelumbo nucifera HOM05D004688 ORTHO05D005490 4.1e-19 100.5 121 47.1
QL09p020531 Quercus lobata HOM05D004688 ORTHO05D005490 4.1e-19 100.5 91 59.3
RcHm_v2.0_Chr1g0384701 Rosa chinensis HOM05D004688 ORTHO05D005490 4.1e-19 100.5 91 54.9
Gohir.D03G055600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 5.4e-19 100.1 86 60.5
Gorai.003G058400 Gossypium raimondii HOM05D004688 ORTHO05D005490 5.4e-19 100.1 86 60.5
Aqoxy1G03166 Aquilegia oxysepala HOM05D004688 ORTHO05D005490 7.0e-19 99.8 103 52.4
Gorai.013G184500 Gossypium raimondii HOM05D004688 ORTHO05D005490 7.0e-19 99.8 91 57.1
CSS0020442 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 9.2e-19 99.4 101 53.5
CiPaw.06G036300 Carya illinoinensis HOM05D004688 ORTHO05D005490 9.2e-19 99.4 91 54.9
FAN10G2489 Fragaria x ananassa HOM05D004688 ORTHO05D005490 9.2e-19 99.4 150 42.0
Cfa016079 Carpinus fangiana HOM05D004688 ORTHO05D005490 1.2e-18 99.0 91 57.1
BcaC06g32678 Brassica carinata HOM05D004688 ORTHO05D005490 1.6e-18 98.6 89 55.1
Dinv24334 Davidia involucrata HOM05D004688 ORTHO05D005490 1.6e-18 98.6 104 52.9
HanXRQChr04g0116531 Helianthus annuus HOM05D004688 ORTHO05D005490 1.6e-18 98.6 97 55.7
Potri.013G076900 Populus trichocarpa HOM05D004688 ORTHO05D005490 1.6e-18 98.6 91 58.2
ClCG09G013160 Citrullus lanatus HOM05D004688 ORTHO05D005490 2.0e-18 98.2 90 58.9
Lj2A605T63 Lonicera japonica HOM05D004688 ORTHO05D005490 2.0e-18 98.2 94 56.4
THA.LOC104805719 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 2.0e-18 98.2 109 49.5
CARHR235310 Cardamine hirsuta HOM05D004688 ORTHO05D005490 2.7e-18 97.8 89 57.3
Gohir.A13G158100 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.7e-18 97.8 91 56.0
Sed0002645 Sechium edule HOM05D004688 ORTHO05D005490 2.7e-18 97.8 90 58.9
A01p18850 Brassica napus HOM05D004688 ORTHO05D005490 3.5e-18 97.4 119 45.4
Lalb_Chr03g0024311 Lupinus albus HOM05D004688 ORTHO05D005490 3.5e-18 97.4 125 46.4
Manes.08G160300 Manihot esculenta HOM05D004688 ORTHO05D005490 3.5e-18 97.4 100 53.0
Sed0013330 Sechium edule HOM05D004688 ORTHO05D005490 3.5e-18 97.4 90 58.9
TAR636G2823 Trochodendron aralioides HOM05D004688 ORTHO05D005490 3.5e-18 97.4 91 57.1
Duzib106G1350 Durio zibethinus HOM05D004688 ORTHO05D005490 4.6e-18 97.1 91 57.1
Gohir.D13G162400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 4.6e-18 97.1 91 56.0
Lalb_Chr01g0000741 Lupinus albus HOM05D004688 ORTHO05D005490 4.6e-18 97.1 122 47.5
Prupe.2G329400 Prunus persica HOM05D004688 ORTHO05D005490 4.6e-18 97.1 105 48.6
Sp7g25560 Schrenkiella parvula HOM05D004688 ORTHO05D005490 4.6e-18 97.1 89 53.9
DCAR_030965 Daucus carota HOM05D004688 ORTHO05D005490 5.9e-18 96.7 97 54.6
TAR629G2324 Trochodendron aralioides HOM05D004688 ORTHO05D005490 7.8e-18 96.3 90 56.7
BraA01t01828Z Brassica rapa HOM05D004688 ORTHO05D005490 1.0e-17 95.9 89 53.9
PSO063G1904 Papaver somniferum HOM05D004688 ORTHO05D005490 1.0e-17 95.9 105 53.3
Sabra13G0065900 Salix brachista HOM05D004688 ORTHO05D005490 1.0e-17 95.9 105 53.3
Ciclev10032005m.g Citrus clementina HOM05D004688 ORTHO05D005490 1.3e-17 95.5 91 56.0
Haze_00366 Corylus avellana HOM05D004688 ORTHO05D005490 1.3e-17 95.5 92 55.4
GSVIVG01024321001 Vitis vinifera HOM05D004688 ORTHO05D005490 1.3e-17 95.5 99 52.5
CsaV3_6G036850 Cucumis sativus L. HOM05D004688 ORTHO05D005490 1.7e-17 95.1 90 57.8
AL7G25110 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 2.3e-17 94.7 109 45.9
Eucgr.E02431 Eucalyptus grandis HOM05D004688 ORTHO05D005490 2.3e-17 94.7 88 55.7
BcaNung01654 Brassica carinata HOM05D004688 ORTHO05D005490 3.0e-17 94.4 89 52.8
C07p55600 Brassica napus HOM05D004688 ORTHO05D005490 3.0e-17 94.4 91 51.6
BolC7t46040H Brassica oleracea HOM05D004688 ORTHO05D005490 3.0e-17 94.4 91 51.6
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 3.0e-17 94.4 90 58.9
Peaxi162Scf00012g01425 Petunia axillaris HOM05D004688 ORTHO05D005490 3.0e-17 94.4 102 52.9
A03p57380 Brassica napus HOM05D004688 ORTHO05D005490 3.9e-17 94.0 89 52.8
C01p23780 Brassica napus HOM05D004688 ORTHO05D005490 3.9e-17 94.0 89 52.8
BraA03t14804Z Brassica rapa HOM05D004688 ORTHO05D005490 3.9e-17 94.0 89 52.8
Thhalv10025651m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 5.0e-17 93.6 124 42.7
Glyma.09G222900 Glycine max HOM05D004688 ORTHO05D005490 5.0e-17 93.6 89 57.3
MELO3C014341.2 Cucumis melo HOM05D004688 ORTHO05D005490 6.6e-17 93.2 90 56.7
BcaC09g50575 Brassica carinata HOM05D004688 ORTHO05D005490 8.6e-17 92.8 89 51.7
Ca_19600_v3 Cicer arietinum L. HOM05D004688 ORTHO05D005490 8.6e-17 92.8 90 55.6
Lj3g0005411 Lotus japonicus HOM05D004688 ORTHO05D005490 8.6e-17 92.8 90 57.8
CANSAT21G2449 Cannabis sativa HOM05D004688 ORTHO05D005490 1.1e-16 92.4 89 50.6
Medtr0004s0230 Medicago truncatula HOM05D004688 ORTHO05D005490 1.1e-16 92.4 88 56.8
PSO782G0681 Papaver somniferum HOM05D004688 ORTHO05D005490 1.1e-16 92.4 105 52.4
Psat0s643g0040 Pisum sativum HOM05D004688 ORTHO05D005490 1.1e-16 92.4 88 56.8
TPR.G9830 Trifolium pratense HOM05D004688 ORTHO05D005490 1.1e-16 92.4 88 56.8
BolC1t02329H Brassica oleracea HOM05D004688 ORTHO05D005490 1.9e-16 91.7 87 51.7
MBI04_g30768_MAGBIO Magnolia biondii HOM05D004688 ORTHO05D005490 1.9e-16 91.7 90 53.3
Carub.0007s1323 Capsella rubella HOM05D004688 ORTHO05D005490 3.3e-16 90.9 88 48.9
CARHR235320 Cardamine hirsuta HOM05D004688 ORTHO05D005490 3.3e-16 90.9 81 55.6
AT4G27610 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 5.6e-16 90.1 109 46.8
AT4G27620 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 5.6e-16 90.1 88 50.0
Lalb_Chr19g0140091 Lupinus albus HOM05D004688 ORTHO05D005490 5.6e-16 90.1 102 49.0
HanXRQChr15g0482031 Helianthus annuus HOM05D004688 ORTHO05D005490 7.3e-16 89.7 101 49.5
Phvul.011G017000 Phaseolus vulgaris HOM05D004688 ORTHO05D005490 7.3e-16 89.7 125 46.4
THA.LOC104823796 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 1.2e-15 89.0 89 51.7
Nn3g21937 Nelumbo nucifera HOM05D004688 ORTHO05D005490 2.1e-15 88.2 106 49.1
Sp7g25570 Schrenkiella parvula HOM05D004688 ORTHO05D005490 3.6e-15 87.4 106 46.2
Solyc11g005810.2 Solanum lycopersicum HOM05D004688 ORTHO05D005490 3.6e-15 87.4 87 54.0
Sopen11g001770 Solanum pennellii HOM05D004688 ORTHO05D005490 3.6e-15 87.4 87 54.0
THA.LOC104821693 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 6.2e-15 86.7 91 52.7
Aa31LG5G12060 Aethionema arabicum HOM05D004688 ORTHO05D003121 8.0e-15 86.3 82 53.7
Glyma.12G014100 Glycine max HOM05D004688 ORTHO05D005490 8.0e-15 86.3 89 57.3
Actinidia06638 Actinidia chinensis HOM05D004688 ORTHO05D005490 1.1e-14 85.9 96 51.0
SGA_v2.0_scaffold163G38052 Striga asiatica HOM05D004688 ORTHO05D005490 1.1e-14 85.9 100 54.0
PGSC0003DMG400028677 Solanum tuberosum HOM05D004688 ORTHO05D005490 1.4e-14 85.5 87 52.9
Manes.09G130000 Manihot esculenta HOM05D004688 ORTHO05D005490 1.8e-14 85.1 89 52.8
CDE11G1120 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 2.3e-14 84.7 106 45.3
CDE02G1754 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 4.0e-14 84.0 106 45.3
unitig_578.g16583 Utricularia gibba HOM05D004688 ORTHO05D005490 4.0e-14 84.0 91 49.5
VMungo1127G1418 Vigna mungo HOM05D004688 ORTHO05D005490 8.9e-14 82.8 95 50.5
Nn4g25357 Nelumbo nucifera HOM05D004688 ORTHO05D005490 2.2e-12 78.2 107 43.0
MD07G1032800 Malus domestica HOM05D004688 ORTHO05D005490 2.9e-12 77.8 89 49.4
Nitab4.5_0000877g0060 Nicotiana tabacum HOM05D004688 ORTHO05D005490 2.9e-12 77.8 87 50.6
Thhalv10025690m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 6.4e-12 76.6 80 46.2
EL10Ac6g14347 Beta vulgaris HOM05D004688 ORTHO05D005490 8.3e-12 76.3 90 46.7
Sc07g0001340 Simmondsia chinensis HOM05D004688 ORTHO05D005490 1.9e-11 75.1 105 42.9
Ah.03g138260 Amaranthus hybridus HOM05D004688 ORTHO05D005490 2.4e-11 74.7 87 48.3
BcaNung01652 Brassica carinata HOM05D004688 ORTHO05D005490 2.4e-11 74.7 81 48.1
AUR62002842 Chenopodium quinoa HOM05D004688 ORTHO05D005490 3.2e-11 74.3 99 44.4
Os02g0582200 Oryza sativa ssp. japonica HOM05D004688 ORTHO05D005490 3.2e-11 74.3 103 48.5
AL7G25100 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 9.2e-11 72.8 64 54.7
AUR62037307 Chenopodium quinoa HOM05D004688 ORTHO05D005490 9.2e-11 72.8 90 44.4
Zm00001eb183340 Zea mays HOM05D004688 ORTHO05D005490 9.2e-11 72.8 103 47.6
Zm00001eb245400 Zea mays HOM05D004688 ORTHO05D005490 1.2e-10 72.4 99 48.5
PGR142G2085 Punica granatum HOM05D004688 ORTHO05D005490 2.0e-10 71.6 113 44.2
MD01G1239500 Malus domestica HOM05D004688 ORTHO05D005490 3.5e-10 70.9 93 41.9
Ah.02g127670 Amaranthus hybridus HOM05D004688 ORTHO05D005490 6.0e-10 70.1 87 47.1
C01p23860 Brassica napus HOM05D004688 ORTHO05D005490 6.0e-10 70.1 120 37.5
HPP92_022761 Vanilla planifolia HOM05D004688 ORTHO05D005490 1.0e-09 69.3 81 49.4
BcaC09g50567 Brassica carinata HOM05D004688 ORTHO05D005490 1.7e-09 68.6 121 37.2
A01p18910 Brassica napus HOM05D004688 ORTHO05D005490 1.7e-09 68.6 120 37.5
BolC1t02331H Brassica oleracea HOM05D004688 ORTHO05D005490 1.7e-09 68.6 121 37.2
BraA01t01832Z Brassica rapa HOM05D004688 ORTHO05D005490 1.7e-09 68.6 120 37.5


User provided reference genes

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