Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold249G44948 Striga asiatica HOM05D005646 ORTHO05D006828 3.6e-291 1004.2 519 100.0
MSTRG.20533 Avicennia marina HOM05D005646 ORTHO05D006828 2.2e-139 500.0 560 55.0
SalBow5G2332 Salvia bowleyana HOM05D005646 ORTHO05D006828 2.2e-131 473.4 534 54.5
Migut.B01206 Erythranthe guttata HOM05D005646 ORTHO05D006828 3.5e-124 449.5 536 53.5
Hma1.2p1_0902F.1_g234850 Hydrangea macrophylla HOM05D005646 ORTHO05D006828 1.9e-122 443.7 540 50.9
Dinv32048 Davidia involucrata HOM05D005646 ORTHO05D006828 4.2e-122 442.6 516 52.9
CSS0050243 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 4.0e-120 436.0 490 51.4
CSS0034883 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 9.8e-119 431.4 525 49.5
SalBow5G2661 Salvia bowleyana HOM05D005646 ORTHO05D006828 9.8e-119 431.4 543 52.1
QL04p013757 Quercus lobata HOM05D005646 ORTHO05D006828 2.2e-118 430.3 527 52.4
Cc02_g29140 Coffea canephora HOM05D005646 ORTHO05D006828 1.8e-117 427.2 501 53.7
CiPaw.13G011000 Carya illinoinensis HOM05D005646 ORTHO05D006828 1.4e-112 411.0 503 50.5
MD02G1293900 Malus domestica HOM05D005646 ORTHO05D006828 2.6e-111 406.8 525 49.0
DCAR_022352 Daucus carota HOM05D005646 ORTHO05D006828 1.7e-110 404.1 529 47.6
GSVIVG01000839001 Vitis vinifera HOM05D005646 ORTHO05D006828 1.7e-110 404.1 528 48.3
Eucgr.J01194 Eucalyptus grandis HOM05D005646 ORTHO05D006828 1.4e-109 401.0 476 48.7
Glyma.11G113800 Glycine max HOM05D005646 ORTHO05D006828 5.9e-108 395.6 390 55.6
Manes.11G002900 Manihot esculenta HOM05D005646 ORTHO05D006828 7.7e-108 395.2 506 48.2
Solyc01g068470.4 Solanum lycopersicum HOM05D005646 ORTHO05D006828 1.0e-107 394.8 482 48.1
Duzib128G0351 Durio zibethinus HOM05D005646 ORTHO05D006828 3.8e-107 392.9 492 48.0
Ciclev10031582m.g Citrus clementina HOM05D005646 ORTHO05D006828 1.1e-106 391.3 516 47.5
MBI19_g40603_MAGBIO Magnolia biondii HOM05D005646 ORTHO05D006828 2.5e-106 390.2 431 52.9
Peaxi162Scf00309g00328 Petunia axillaris HOM05D005646 ORTHO05D006828 3.3e-106 389.8 510 48.8
Sabra01G0018200 Salix brachista HOM05D005646 ORTHO05D000112 3.3e-106 389.8 502 47.8
Ah.10g030810 Amaranthus hybridus HOM05D005646 ORTHO05D006828 1.6e-105 387.5 567 43.2
PGR142G3067 Punica granatum HOM05D005646 ORTHO05D006828 2.1e-105 387.1 513 47.2
THA.LOC104824183 Tarenaya hassleriana HOM05D005646 ORTHO05D006828 6.1e-105 385.6 474 47.7
Gorai.011G293500 Gossypium raimondii HOM05D005646 ORTHO05D006828 1.0e-104 384.8 507 46.4
Potri.001G024200 Populus trichocarpa HOM05D005646 ORTHO05D006828 1.4e-104 384.4 503 48.1
Lj3g0019487 Lotus japonicus HOM05D005646 ORTHO05D006828 1.8e-104 384.0 525 48.4
Sc17g0003830 Simmondsia chinensis HOM05D005646 ORTHO05D006828 1.8e-104 384.0 506 47.4
Sopen01g030430 Solanum pennellii HOM05D005646 ORTHO05D006828 1.8e-104 384.0 532 45.5
Ca_20909_v3 Cicer arietinum L. HOM05D005646 ORTHO05D006828 2.3e-104 383.6 521 48.2
CANSAT54G2531 Cannabis sativa HOM05D005646 ORTHO05D006828 4.0e-104 382.9 488 47.7
ClCG01G007660 Citrullus lanatus HOM05D005646 ORTHO05D006828 5.2e-104 382.5 524 47.3
VMungo1127G2196 Vigna mungo HOM05D005646 ORTHO05D006828 5.2e-104 382.5 511 48.3
Atru.chr11.2492 Acer truncatum HOM05D005646 ORTHO05D006828 8.9e-104 381.7 536 44.4
Gohir.D10G253200 Gossypium hirsutum HOM05D005646 ORTHO05D006828 8.9e-104 381.7 507 46.2
Hund13332 Selenicereus undatus HOM05D005646 ORTHO05D006828 1.2e-103 381.3 609 42.9
CDE08G1053 Ceratophyllum demersum HOM05D005646 ORTHO05D006828 4.4e-103 379.4 517 47.2
Lsat_1_v5_gn_4_30541 Lactuca sativa HOM05D005646 ORTHO05D006828 4.4e-103 379.4 514 44.7
Nitab4.5_0000316g0120 Nicotiana tabacum HOM05D005646 ORTHO05D006828 5.7e-103 379.0 415 52.0
Thecc.10G006200 Theobroma cacao HOM05D005646 ORTHO05D006828 2.2e-102 377.1 481 48.9
AUR62032557 Chenopodium quinoa HOM05D005646 ORTHO05D006828 3.7e-102 376.3 595 41.3
CAN.G1571.4 Capsicum annuum HOM05D005646 ORTHO05D006828 6.4e-102 375.6 489 47.4
CsaV3_5G024710 Cucumis sativus L. HOM05D005646 ORTHO05D006828 1.4e-101 374.4 527 47.1
Gohir.A10G241000 Gossypium hirsutum HOM05D005646 ORTHO05D006828 3.2e-101 373.2 493 46.7
MELO3C005130.2 Cucumis melo HOM05D005646 ORTHO05D006828 4.1e-101 372.9 535 46.2
Atru.chr11.2464 Acer truncatum HOM05D005646 ORTHO05D006828 5.4e-101 372.5 474 47.3
Carub.0004s2080 Capsella rubella HOM05D005646 ORTHO05D006828 7.0e-101 372.1 520 46.0
Sed0017230 Sechium edule HOM05D005646 ORTHO05D006828 9.2e-101 371.7 519 46.1
ECA234G1046 Erigeron canadensis HOM05D005646 ORTHO05D006828 2.7e-100 370.2 395 51.4
FAN18G3275 Fragaria x ananassa HOM05D005646 ORTHO05D006828 2.7e-100 370.2 377 54.9
HanXRQChr16g0525351 Helianthus annuus HOM05D005646 ORTHO05D006828 2.7e-100 370.2 392 50.5
COL.COLO4_33459 Corchorus olitorius HOM05D005646 ORTHO05D006828 4.6e-100 369.4 409 51.3
FvH4_5g29000 Fragaria vesca HOM05D005646 ORTHO05D006828 4.6e-100 369.4 377 54.9
AUR62031673 Chenopodium quinoa HOM05D005646 ORTHO05D006828 1.3e-99 367.9 586 41.8
TWI63G1320 Tripterygium wilfordii HOM05D005646 ORTHO05D006828 1.7e-99 367.5 491 46.4
arahy.Tifrunner.gnm1.ann1.HJ7TPY Arachis hypogaea HOM05D005646 ORTHO05D006828 2.3e-99 367.1 486 46.5
Lj9A646T48 Lonicera japonica HOM05D005646 ORTHO05D006828 3.0e-99 366.7 378 53.7
FAN13G1025 Fragaria x ananassa HOM05D005646 ORTHO05D006828 3.9e-99 366.3 377 54.6
EL10Ac2g02850 Beta vulgaris HOM05D005646 ORTHO05D006828 1.5e-98 364.4 329 56.5
TPR.G30507 Trifolium pratense HOM05D005646 ORTHO05D006828 1.5e-98 364.4 456 47.8
ATR0217G018 Amborella trichopoda HOM05D005646 ORTHO05D006828 1.9e-98 364.0 519 44.7
Lalb_Chr03g0025471 Lupinus albus HOM05D005646 ORTHO05D006828 1.9e-98 364.0 317 58.7
unitig_746.g26627 Utricularia gibba HOM05D005646 ORTHO05D006828 1.9e-98 364.0 517 44.9
FAN08G2254 Fragaria x ananassa HOM05D005646 ORTHO05D006828 9.5e-98 361.7 377 54.4
arahy.Tifrunner.gnm1.ann1.2P0PPD Arachis hypogaea HOM05D005646 ORTHO05D006828 2.8e-97 360.1 472 46.4
Medtr4g071010 Medicago truncatula HOM05D005646 ORTHO05D006828 4.7e-97 359.4 513 44.6
RcHm_v2.0_Chr7g0221681 Rosa chinensis HOM05D005646 ORTHO05D006828 3.1e-96 356.7 374 53.2
Sp4g21170 Schrenkiella parvula HOM05D005646 ORTHO05D006828 4.0e-96 356.3 410 50.0
Aqoxy1G00222 Aquilegia oxysepala HOM05D005646 ORTHO05D006828 5.2e-96 355.9 376 52.4
CARHR133490 Cardamine hirsuta HOM05D005646 ORTHO05D006828 8.9e-96 355.1 382 52.9
AL4G36080 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 4.4e-95 352.8 315 58.4
Prupe.2G029800 Prunus persica HOM05D005646 ORTHO05D006828 5.8e-95 352.4 521 46.3
Haze_03084 Corylus avellana HOM05D005646 ORTHO05D006828 9.8e-95 351.7 449 50.6
A03p21590 Brassica napus HOM05D005646 ORTHO05D006828 1.3e-94 351.3 501 45.3
C03p25580 Brassica napus HOM05D005646 ORTHO05D006828 2.2e-94 350.5 346 54.9
BraA03t11395Z Brassica rapa HOM05D005646 ORTHO05D006828 2.0e-92 344.0 520 44.2
BolC3t14946H Brassica oleracea HOM05D005646 ORTHO05D006828 7.8e-92 342.0 365 52.6
Actinidia19445 Actinidia chinensis HOM05D005646 ORTHO05D006828 8.6e-91 338.6 347 53.9
AT2G38780 Arabidopsis thaliana HOM05D005646 ORTHO05D006828 1.1e-90 338.2 540 42.6
PSO063G6839 Papaver somniferum HOM05D005646 ORTHO05D006828 1.6e-89 334.3 393 48.1
Nn7g36491 Nelumbo nucifera HOM05D005646 ORTHO05D006828 3.1e-88 330.1 531 43.1
Aa31LG5G20900 Aethionema arabicum HOM05D005646 ORTHO05D006828 8.9e-88 328.6 552 41.3
Cpa.g.sc197.4 Carica papaya HOM05D005646 ORTHO05D006828 2.6e-87 327.0 410 48.5
PSO341G0002 Papaver somniferum HOM05D005646 ORTHO05D006828 7.5e-87 325.5 317 53.6
Thhalv10016593m.g Eutrema salsugineum HOM05D005646 ORTHO05D006828 2.2e-86 323.9 277 60.6
SEGI_25656 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 2.3e-83 313.9 348 48.6
TAR053G0001 Trochodendron aralioides HOM05D005646 ORTHO05D006828 2.3e-83 313.9 531 42.4
Nitab4.5_0013777g0020 Nicotiana tabacum HOM05D005646 ORTHO05D006828 9.5e-82 308.5 387 46.5
HPP92_001013 Vanilla planifolia HOM05D005646 ORTHO05D006828 1.1e-77 295.0 311 51.4
Rhsim07G0062900 Rhododendron simsii HOM05D005646 ORTHO05D006828 2.4e-77 293.9 290 52.8
Dinv31492 Davidia involucrata HOM05D005646 ORTHO05D006828 9.2e-77 292.0 392 50.5
vmacro13731 Vaccinium macrocarpon HOM05D005646 ORTHO05D006828 6.2e-73 279.3 297 51.2
Mapoly0066s0082 Marchantia polymorpha HOM05D005646 ORTHO05D006828 1.5e-63 248.1 344 45.3
Zm00001eb347150 Zea mays HOM05D005646 ORTHO05D006828 1.3e-62 245.0 503 35.6
Psat7g183120 Pisum sativum HOM05D005646 ORTHO05D006828 1.9e-61 241.1 397 42.1
Phvul.011G041800 Phaseolus vulgaris HOM05D005646 ORTHO05D006828 6.0e-60 236.1 401 42.6
SMO145G0178 Selaginella moellendorffii HOM05D005646 ORTHO05D006828 6.0e-60 236.1 312 41.7
Sc15g0003140 Simmondsia chinensis HOM05D005646 ORTHO05D006828 5.1e-59 233.0 304 44.1
Pp3c21_7940 Physcomitrium patens HOM05D005646 ORTHO05D006828 2.6e-55 220.7 508 34.3
AagrBONN_evm.TU.Sc2ySwM_228.261 Anthoceros agrestis HOM05D005646 ORTHO05D006828 4.5e-55 219.9 564 32.3
Os05g0381500 Oryza sativa ssp. japonica HOM05D005646 ORTHO05D006828 8.7e-51 205.7 203 51.7
GSVIVG01000664001 Vitis vinifera HOM05D005646 ORTHO05D006828 8.2e-49 199.1 191 59.2
AL4G20430 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 3.2e-45 187.2 299 41.8
RcHm_v2.0_Chr2g0113191 Rosa chinensis HOM05D005646 ORTHO05D006828 7.6e-39 166.0 268 41.4
RcHm_v2.0_Chr4g0400611 Rosa chinensis HOM05D005646 ORTHO05D006828 1.0e-38 165.6 187 48.1
Glyma.12G039666 Glycine max HOM05D005646 ORTHO05D006828 1.4e-37 161.8 125 67.2
PGSC0003DMG400000847 Solanum tuberosum HOM05D005646 ORTHO05D006828 6.1e-36 156.4 104 71.2
CBR_g29393 Chara braunii HOM05D005646 ORTHO05D006828 1.1e-34 152.1 443 30.5
Cre13.g607900 Chlamydomonas reinhardtii HOM05D005646 ORTHO05D006828 3.4e-31 140.6 243 33.7
SalBow1G3971 Salvia bowleyana HOM05D005646 ORTHO05D006828 1.3e-30 138.7 232 40.1
PSO017G4843 Papaver somniferum HOM05D005646 ORTHO05D006828 1.4e-29 135.2 129 55.0
SEGI_07819 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 1.6e-28 131.7 124 59.7
SEGI_35855 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 1.6e-28 131.7 124 59.7
Glyma.18G124100 Glycine max HOM05D005646 ORTHO05D006828 1.0e-27 129.0 142 47.9
AL4G20290 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 1.4e-27 128.6 118 57.6
RcHm_v2.0_Chr2g0154951 Rosa chinensis HOM05D005646 ORTHO05D006828 2.4e-24 117.9 178 43.3
PRCOL_00006924 Prasinoderma coloniale HOM05D005646 ORTHO05D006828 1.5e-23 115.2 199 34.7
arahy.Tifrunner.gnm1.ann1.7I4JN8 Arachis hypogaea HOM05D005646 ORTHO05D006828 3.9e-19 100.5 62 75.8
RcHm_v2.0_Chr4g0400621 Rosa chinensis HOM05D005646 ORTHO05D006828 1.1e-18 99.0 85 55.3
COL.COLO4_25675 Corchorus olitorius HOM05D005646 ORTHO05D006828 2.2e-14 84.7 64 57.8
arahy.Tifrunner.gnm1.ann1.B52RT5 Arachis hypogaea HOM05D005646 ORTHO05D006828 1.1e-13 82.4 52 73.1
PGSC0003DMG400000846 Solanum tuberosum HOM05D005646 ORTHO05D006828 4.7e-12 77.0 68 57.4
CARHR125840 Cardamine hirsuta HOM05D005646 ORTHO05D006828 8.0e-12 76.3 120 41.7
RcHm_v2.0_Chr4g0400631 Rosa chinensis HOM05D005646 ORTHO05D006828 4.8e-09 67.0 46 65.2
RcHm_v2.0_Chr1g0326961 Rosa chinensis HOM05D005646 ORTHO05D006828 1.4e-08 65.5 50 58.0
CBR_g38389 Chara braunii HOM05D005646 ORTHO05D006828 1.2e-07 62.4 173 28.9
Glyma.12G039732 Glycine max HOM05D005646 ORTHO05D006828 1.2e-07 62.4 230 30.9
MCO02G103 Micromonas commoda HOM05D005646 ORTHO05D006828 2.7e-07 61.2 115 31.3


User provided reference genes

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