Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold247G44890 Striga asiatica HOM05D001846 ORTHO05D005785 2.0e-123 446.0 270 100.0
SGA_v2.0_scaffold8G04581 Striga asiatica HOM05D001846 ORTHO05D005785 2.0e-75 286.6 274 62.8
Oeu026419.1 Olea europaea HOM05D001846 ORTHO05D005785 2.6e-30 136.7 272 45.2
MSTRG.21370 Avicennia marina HOM05D001846 ORTHO05D005785 9.8e-30 134.8 285 38.6
Migut.D00610 Erythranthe guttata HOM05D001846 ORTHO05D005785 1.9e-28 130.6 270 37.4
SalBow1G1572 Salvia bowleyana HOM05D001846 ORTHO05D005785 2.1e-24 117.1 257 38.1
CAN.G71.16 Capsicum annuum HOM05D001846 ORTHO05D005785 1.5e-22 110.9 72 73.6
Oeu016678.1 Olea europaea HOM05D001846 ORTHO05D005785 3.4e-22 109.8 247 37.2
Nitab4.5_0007154g0020 Nicotiana tabacum HOM05D001846 ORTHO05D005785 4.4e-22 109.4 62 83.9
Solyc11g065630.3 Solanum lycopersicum HOM05D001846 ORTHO05D005785 9.8e-22 108.2 68 76.5
Sopen11g025350 Solanum pennellii HOM05D001846 ORTHO05D005785 9.8e-22 108.2 68 76.5
PGSC0003DMG400010305 Solanum tuberosum HOM05D001846 ORTHO05D005785 3.7e-21 106.3 68 75.0
ECA233G5307 Erigeron canadensis HOM05D001846 ORTHO05D005785 4.9e-21 105.9 281 35.6
Actinidia16341 Actinidia chinensis HOM05D001846 ORTHO05D005785 6.4e-21 105.5 240 39.6
Dinv36247 Davidia involucrata HOM05D001846 ORTHO05D005785 6.4e-21 105.5 252 33.7
HanXRQChr13g0401091 Helianthus annuus HOM05D001846 ORTHO05D005785 1.1e-20 104.8 277 33.6
Nitab4.5_0002741g0070 Nicotiana tabacum HOM05D001846 ORTHO05D005785 1.9e-20 104.0 151 60.9
Atru.chr3.2697 Acer truncatum HOM05D001846 ORTHO05D005785 4.1e-20 102.8 249 33.3
QL01p004435 Quercus lobata HOM05D001846 ORTHO05D005785 4.1e-20 102.8 263 34.6
Lsat_1_v5_gn_6_25301 Lactuca sativa HOM05D001846 ORTHO05D005785 5.4e-20 102.4 213 39.0
QL01p004534 Quercus lobata HOM05D001846 ORTHO05D005785 5.4e-20 102.4 264 33.7
Lj1A326G19 Lonicera japonica HOM05D001846 ORTHO05D005785 7.1e-20 102.1 240 37.1
TAR369G0438 Trochodendron aralioides HOM05D001846 ORTHO05D005785 7.1e-20 102.1 241 34.4
Actinidia26798 Actinidia chinensis HOM05D001846 ORTHO05D005785 9.2e-20 101.7 63 79.4
Ah.06g194060 Amaranthus hybridus HOM05D001846 ORTHO05D005785 9.2e-20 101.7 252 34.5
Actinidia06915 Actinidia chinensis HOM05D001846 ORTHO05D005785 2.1e-19 100.5 70 70.0
MSTRG.12465 Avicennia marina HOM05D001846 ORTHO05D005785 2.1e-19 100.5 258 34.1
Hma1.2p1_1313F.1_g274970 Hydrangea macrophylla HOM05D001846 ORTHO05D005785 2.1e-19 100.5 264 34.1
TWI60G1588 Tripterygium wilfordii HOM05D001846 ORTHO05D005785 2.1e-19 100.5 247 34.0
Peaxi162Scf00004g02629 Petunia axillaris HOM05D001846 ORTHO05D005785 2.7e-19 100.1 274 41.6
Potri.001G256700 Populus trichocarpa HOM05D001846 ORTHO05D005785 6.0e-19 99.0 248 33.1
MSTRG.17597 Avicennia marina HOM05D001846 ORTHO05D005785 1.0e-18 98.2 262 34.7
Haze_23151 Corylus avellana HOM05D001846 ORTHO05D005785 1.0e-18 98.2 63 73.0
FvH4_3g28690 Fragaria vesca HOM05D001846 ORTHO05D005785 3.9e-18 96.3 63 73.0
FAN11G2083 Fragaria x ananassa HOM05D001846 ORTHO05D005785 3.9e-18 96.3 63 73.0
MSTRG.18434 Avicennia marina HOM05D001846 ORTHO05D005785 5.1e-18 95.9 249 45.8
Manes.06G163200 Manihot esculenta HOM05D001846 ORTHO05D005785 6.6e-18 95.5 72 62.5
Sabra16G0155900 Salix brachista HOM05D001846 ORTHO05D005785 6.6e-18 95.5 248 33.1
Cpa.g.sc84.42 Carica papaya HOM05D001846 ORTHO05D005785 1.5e-17 94.4 247 34.0
Nn7g36246 Nelumbo nucifera HOM05D001846 ORTHO05D005785 1.5e-17 94.4 71 60.6
Hund22024 Selenicereus undatus HOM05D001846 ORTHO05D005785 1.5e-17 94.4 257 34.2
TAR369G0720 Trochodendron aralioides HOM05D001846 ORTHO05D005785 7.3e-17 92.0 240 42.9
Duzib150G0388 Durio zibethinus HOM05D001846 ORTHO05D005785 9.5e-17 91.7 243 39.5
Medtr4g077160 Medicago truncatula HOM05D001846 ORTHO05D005785 9.5e-17 91.7 62 69.4
vmacro04149 Vaccinium macrocarpon HOM05D001846 ORTHO05D005785 1.2e-16 91.3 264 34.5
HanXRQChr02g0051491 Helianthus annuus HOM05D001846 ORTHO05D005785 1.6e-16 90.9 199 40.2
Manes.14G003700 Manihot esculenta HOM05D001846 ORTHO05D005785 1.6e-16 90.9 62 67.7
VMungo1127G1936 Vigna mungo HOM05D001846 ORTHO05D005785 1.6e-16 90.9 240 34.6
EL10Ac4g10235 Beta vulgaris HOM05D001846 ORTHO05D005785 2.8e-16 90.1 248 40.7
CiPaw.14G118000 Carya illinoinensis HOM05D001846 ORTHO05D005785 2.8e-16 90.1 248 32.7
Duzib168G1640 Durio zibethinus HOM05D001846 ORTHO05D005785 2.8e-16 90.1 233 33.0
DCAR_023761 Daucus carota HOM05D001846 ORTHO05D005785 3.6e-16 89.7 65 67.7
Potri.009G052400 Populus trichocarpa HOM05D001846 ORTHO05D005785 3.6e-16 89.7 240 33.3
arahy.Tifrunner.gnm1.ann1.8PYD8T Arachis hypogaea HOM05D001846 ORTHO05D005785 4.7e-16 89.4 58 69.0
FAN25G3740 Fragaria x ananassa HOM05D001846 ORTHO05D005785 4.7e-16 89.4 63 68.3
MD11G1191400 Malus domestica HOM05D001846 ORTHO05D005785 4.7e-16 89.4 241 33.2
Dinv22169 Davidia involucrata HOM05D001846 ORTHO05D005785 6.2e-16 89.0 146 44.5
Eucgr.J00759 Eucalyptus grandis HOM05D001846 ORTHO05D005785 6.2e-16 89.0 234 34.6
arahy.Tifrunner.gnm1.ann1.563I02 Arachis hypogaea HOM05D001846 ORTHO05D005785 8.1e-16 88.6 57 71.9
Cc01_g04530 Coffea canephora HOM05D001846 ORTHO05D005785 8.1e-16 88.6 67 65.7
Lalb_Chr19g0139851 Lupinus albus HOM05D001846 ORTHO05D005785 1.1e-15 88.2 243 32.9
Thecc.09G236100 Theobroma cacao HOM05D001846 ORTHO05D005785 1.8e-15 87.4 231 37.2
CiPaw.13G159200 Carya illinoinensis HOM05D001846 ORTHO05D005785 2.3e-15 87.0 239 35.1
Sc16g0011440 Simmondsia chinensis HOM05D001846 ORTHO05D005785 2.3e-15 87.0 252 30.2
PGR119G1478 Punica granatum HOM05D001846 ORTHO05D005785 3.1e-15 86.7 60 68.3
Sed0016770 Sechium edule HOM05D001846 ORTHO05D005785 3.1e-15 86.7 67 58.2
Phvul.011G021900 Phaseolus vulgaris HOM05D001846 ORTHO05D005785 4.0e-15 86.3 239 33.5
Gohir.D09G110300 Gossypium hirsutum HOM05D001846 ORTHO05D005785 5.2e-15 85.9 73 56.2
Sabra09G0038200 Salix brachista HOM05D001846 ORTHO05D005785 5.2e-15 85.9 240 33.8
Gohir.A09G113600 Gossypium hirsutum HOM05D001846 ORTHO05D005785 6.8e-15 85.5 60 63.3
Thecc.09G235700 Theobroma cacao HOM05D001846 ORTHO05D005785 6.8e-15 85.5 226 37.6
MELO3C014586.2 Cucumis melo HOM05D001846 ORTHO05D005785 8.9e-15 85.1 67 56.7
ClCG02G023130 Citrullus lanatus HOM05D001846 ORTHO05D005785 2.0e-14 84.0 67 56.7
Gohir.D13G220500 Gossypium hirsutum HOM05D001846 ORTHO05D005785 2.0e-14 84.0 261 29.9
Gorai.006G127900 Gossypium raimondii HOM05D001846 ORTHO05D005785 2.0e-14 84.0 73 56.2
Rhsim13G0220400 Rhododendron simsii HOM05D001846 ORTHO05D005785 2.0e-14 84.0 248 35.5
CANSAT54G0460 Cannabis sativa HOM05D001846 ORTHO05D005785 2.6e-14 83.6 255 34.1
BcaB04g17234 Brassica carinata HOM05D001846 ORTHO05D005785 3.4e-14 83.2 64 59.4
COL.COLO4_06126 Corchorus olitorius HOM05D001846 ORTHO05D005785 3.4e-14 83.2 241 40.7
CsaV3_6G039320 Cucumis sativus L. HOM05D001846 ORTHO05D005785 3.4e-14 83.2 61 60.7
RcHm_v2.0_Chr5g0052391 Rosa chinensis HOM05D001846 ORTHO05D005785 3.4e-14 83.2 245 32.7
Ciclev10014939m.g Citrus clementina HOM05D001846 ORTHO05D005785 4.4e-14 82.8 247 33.2
Lj3g0017471 Lotus japonicus HOM05D001846 ORTHO05D005785 4.4e-14 82.8 250 32.8
PSO700G0220 Papaver somniferum HOM05D001846 ORTHO05D005785 4.4e-14 82.8 248 31.9
BcaB07g33587 Brassica carinata HOM05D001846 ORTHO05D005785 5.8e-14 82.4 64 62.5
BraA08t32338Z Brassica rapa HOM05D001846 ORTHO05D005785 5.8e-14 82.4 64 57.8
FAN16G0902 Fragaria x ananassa HOM05D001846 ORTHO05D005785 5.8e-14 82.4 243 32.5
FAN21G3148 Fragaria x ananassa HOM05D001846 ORTHO05D005785 5.8e-14 82.4 245 34.7
Glyma.12G019500 Glycine max HOM05D001846 ORTHO05D005785 7.6e-14 82.0 236 34.7
A08p03060 Brassica napus HOM05D001846 ORTHO05D005785 9.9e-14 81.6 62 59.7
BolC3t21298H Brassica oleracea HOM05D001846 ORTHO05D005785 9.9e-14 81.6 64 54.7
BcaC01g01249 Brassica carinata HOM05D001846 ORTHO05D005785 1.3e-13 81.3 64 56.2
C03p89760 Brassica napus HOM05D001846 ORTHO05D005785 1.3e-13 81.3 64 56.2
AUR62019315 Chenopodium quinoa HOM05D001846 ORTHO05D005785 1.3e-13 81.3 199 39.2
Lj3g0008415 Lotus japonicus HOM05D001846 ORTHO05D005785 1.3e-13 81.3 256 31.2
Lj3g0026618 Lotus japonicus HOM05D001846 ORTHO05D005785 1.3e-13 81.3 256 31.2
PSO170G6025 Papaver somniferum HOM05D001846 ORTHO05D005785 1.3e-13 81.3 244 32.4
Thhalv10011423m.g Eutrema salsugineum HOM05D001846 ORTHO05D005785 1.7e-13 80.9 60 60.0
Psat7g170880 Pisum sativum HOM05D001846 ORTHO05D005785 1.7e-13 80.9 174 42.5
THA.LOC104811173 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 1.7e-13 80.9 63 55.6
MD03G1173500 Malus domestica HOM05D001846 ORTHO05D005785 2.2e-13 80.5 249 30.5
Prupe.4G251400 Prunus persica HOM05D001846 ORTHO05D005785 2.2e-13 80.5 248 33.1
Ca_18965_v3 Cicer arietinum L. HOM05D001846 ORTHO05D005785 3.7e-13 79.7 206 41.7
MBI04_g43760_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 4.9e-13 79.3 66 54.5
MBI04_g45701_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 4.9e-13 79.3 59 61.0
Glyma.11G093300 Glycine max HOM05D001846 ORTHO05D005785 6.4e-13 79.0 228 34.6
CARHR041560 Cardamine hirsuta HOM05D001846 ORTHO05D005785 1.1e-12 78.2 69 55.1
A06p02500 Brassica napus HOM05D001846 ORTHO05D005785 1.4e-12 77.8 60 56.7
Carub.0001s4028 Capsella rubella HOM05D001846 ORTHO05D005785 1.4e-12 77.8 69 55.1
AUR62000135 Chenopodium quinoa HOM05D001846 ORTHO05D005785 1.4e-12 77.8 199 44.7
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 1.4e-12 77.8 261 29.5
Gorai.013G251400 Gossypium raimondii HOM05D001846 ORTHO05D005785 2.4e-12 77.0 138 35.5
AL1G59260 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 3.2e-12 76.6 67 56.7
Sp1g38080 Schrenkiella parvula HOM05D001846 ORTHO05D005785 4.1e-12 76.3 57 59.6
Aqoxy2G00165 Aquilegia oxysepala HOM05D001846 ORTHO05D005785 7.1e-12 75.5 173 45.7
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 9.2e-12 75.1 240 33.8
BraA06t23456Z Brassica rapa HOM05D001846 ORTHO05D005785 2.1e-11 73.9 51 62.7
SEGI_01920 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 4.6e-11 72.8 62 56.5
CDE05G1816 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 6.0e-11 72.4 59 54.2
THA.LOC104817913 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 1.3e-10 71.2 63 54.0
CDE05G0547 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 6.6e-10 68.9 55 56.4
Aa31LG10G3580 Aethionema arabicum HOM05D000089 ORTHO05D005785 3.3e-09 66.6 214 41.1
BcaC08g43310 Brassica carinata HOM05D001846 ORTHO05D005785 1.2e-08 64.7 161 46.0
C06p06570 Brassica napus HOM05D001846 ORTHO05D005785 1.2e-08 64.7 161 46.0
BolC6t35770H Brassica oleracea HOM05D001846 ORTHO05D005785 1.2e-08 64.7 161 46.0
AT1G51405 Arabidopsis thaliana HOM05D001846 ORTHO05D005785 3.6e-08 63.2 177 45.8
Os03g0216900 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D005785 4.7e-08 62.8 72 44.4
Zm00001eb400050 Zea mays HOM05D001846 ORTHO05D005785 6.2e-08 62.4 72 44.4
ATR0332G095 Amborella trichopoda HOM05D001846 ORTHO05D005785 1.4e-07 61.2 67 40.3
HPP92_007908 Vanilla planifolia HOM05D001846 ORTHO05D005785 3.1e-07 60.1 56 50.0
Zm00001eb008800 Zea mays HOM05D001846 ORTHO05D005785 3.4e-06 56.6 182 39.6
Zm00001eb393780 Zea mays HOM05D001846 ORTHO05D005785 4.4e-06 56.2 186 39.8


User provided reference genes

Program Settings