Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold247G44889 Striga asiatica HOM05D004654 ORTHO05D005414 5.3e-87 324.7 212 100.0
SGA_v2.0_scaffold8G04582 Striga asiatica HOM05D004654 ORTHO05D005414 1.0e-61 240.7 214 68.7
Migut.D00607 Erythranthe guttata HOM05D004654 ORTHO05D005414 7.9e-43 177.9 218 62.4
Oeu034013.1 Olea europaea HOM05D004654 ORTHO05D005414 3.7e-32 142.5 218 50.9
Oeu024775.2 Olea europaea HOM05D004654 ORTHO05D005414 1.8e-31 140.2 221 50.7
unitig_90.g27472 Utricularia gibba HOM05D004654 ORTHO05D005414 3.5e-30 136.0 189 50.8
SalBow6G0287 Salvia bowleyana HOM05D004654 ORTHO05D005414 3.2e-28 129.4 212 42.5
Solyc03g031950.3 Solanum lycopersicum HOM05D004654 ORTHO05D005414 7.2e-28 128.3 138 52.9
PGSC0003DMG400024083 Solanum tuberosum HOM05D004654 ORTHO05D005414 1.2e-27 127.5 214 41.6
Sopen03g005810 Solanum pennellii HOM05D004654 ORTHO05D005414 2.7e-27 126.3 138 52.2
PGSC0003DMG400037923 Solanum tuberosum HOM05D004654 ORTHO05D005414 1.0e-26 124.4 206 42.2
Nitab4.5_0008713g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 9.8e-25 117.9 210 38.6
unitig_85.g27201 Utricularia gibba HOM05D004654 ORTHO05D005414 4.8e-24 115.5 165 46.1
Nitab4.5_0000235g0010 Nicotiana tabacum HOM05D004654 ORTHO05D005414 1.0e-21 107.8 230 41.7
Nitab4.5_0003016g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 2.9e-21 106.3 229 41.9
Cc07_g12430 Coffea canephora HOM05D004654 ORTHO05D005414 4.2e-20 102.4 210 45.7
Peaxi162Scf00918g00026 Petunia axillaris HOM05D004654 ORTHO05D005414 3.6e-19 99.4 209 41.6
unitig_578.g16656 Utricularia gibba HOM05D004654 ORTHO05D005414 1.4e-18 97.4 98 53.1
SGA_v2.0_scaffold42G16062 Striga asiatica HOM05D004654 ORTHO05D005414 6.8e-18 95.1 190 40.0
DCAR_002994 Daucus carota HOM05D004654 ORTHO05D005414 1.2e-17 94.4 169 44.4
Actinidia17131 Actinidia chinensis HOM05D004654 ORTHO05D005414 1.1e-15 87.8 175 36.0
vmacro20421 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 2.4e-15 86.7 103 46.6
Lsat_1_v5_gn_8_113741 Lactuca sativa HOM05D004654 ORTHO05D005414 3.1e-15 86.3 136 43.4
vmacro23510 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 3.5e-14 82.8 103 45.6
Hma1.2p1_0085F.1_g044140 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 1.7e-13 80.5 103 44.7
Hma1.2p1_2924F.1_g330430 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 1.7e-13 80.5 103 44.7
Dinv28280 Davidia involucrata HOM05D004654 ORTHO05D005414 2.5e-12 76.6 177 32.8
Rhsim08G0023400 Rhododendron simsii HOM05D004654 ORTHO05D005414 2.5e-12 76.6 157 35.0
CiPaw.03G008900 Carya illinoinensis HOM05D004654 ORTHO05D005414 7.3e-12 75.1 74 58.1
CiPaw.07G102900 Carya illinoinensis HOM05D004654 ORTHO05D005414 7.3e-12 75.1 74 52.7
Cpa.g.sc108.18 Carica papaya HOM05D004654 ORTHO05D005414 1.2e-11 74.3 193 35.8
Atru.chr1.2194 Acer truncatum HOM05D004654 ORTHO05D005414 1.6e-11 73.9 186 39.8
HanXRQChr15g0485191 Helianthus annuus HOM05D004654 ORTHO05D005414 1.6e-11 73.9 81 50.6
Potri.004G078500 Populus trichocarpa HOM05D004654 ORTHO05D005414 1.6e-11 73.9 179 37.4
Actinidia35698 Actinidia chinensis HOM05D004654 ORTHO05D005414 2.1e-11 73.6 53 64.2
Prupe.3G011600 Prunus persica HOM05D004654 ORTHO05D005414 2.1e-11 73.6 171 35.7
THA.LOC104822158 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 2.1e-11 73.6 137 41.6
HanXRQChr16g0532651 Helianthus annuus HOM05D004654 ORTHO05D005414 2.8e-11 73.2 81 50.6
Hma1.2p1_0034F.1_g021540 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 2.8e-11 73.2 93 46.2
Lsat_1_v5_gn_2_72380 Lactuca sativa HOM05D004654 ORTHO05D005414 2.8e-11 73.2 75 54.7
Potri.017G142100 Populus trichocarpa HOM05D004654 ORTHO05D005414 2.8e-11 73.2 181 35.4
arahy.Tifrunner.gnm1.ann1.C1RHT9 Arachis hypogaea HOM05D004654 ORTHO05D005414 3.6e-11 72.8 120 43.3
Peaxi162Scf00784g00044 Petunia axillaris HOM05D004654 ORTHO05D005414 4.7e-11 72.4 87 51.7
CiPaw.13G067300 Carya illinoinensis HOM05D004654 ORTHO05D005414 6.1e-11 72.0 74 50.0
DCAR_000947 Daucus carota HOM05D004654 ORTHO05D005414 6.1e-11 72.0 91 46.2
Manes.02G082600 Manihot esculenta HOM05D004654 ORTHO05D005414 6.1e-11 72.0 178 34.8
Cfa008008 Carpinus fangiana HOM05D004654 ORTHO05D005414 8.0e-11 71.6 109 50.5
Sabra17G0119000 Salix brachista HOM05D004654 ORTHO05D005414 8.0e-11 71.6 173 35.8
HanXRQChr15g0486441 Helianthus annuus HOM05D004654 ORTHO05D005414 1.8e-10 70.5 148 36.5
Aa31LG2G2610 Aethionema arabicum HOM05D004654 ORTHO05D005414 2.3e-10 70.1 198 31.8
Ciclev10012875m.g Citrus clementina HOM05D004654 ORTHO05D005414 3.0e-10 69.7 175 34.3
Glyma.11G204100 Glycine max HOM05D004654 ORTHO05D005414 3.0e-10 69.7 146 38.4
Haze_14051 Corylus avellana HOM05D004654 ORTHO05D005414 4.0e-10 69.3 83 56.6
Lsat_1_v5_gn_3_68821 Lactuca sativa HOM05D004654 ORTHO05D005414 4.0e-10 69.3 96 43.8
Manes.01G125100 Manihot esculenta HOM05D004654 ORTHO05D005414 4.0e-10 69.3 54 68.5
CANSAT78G0950 Cannabis sativa HOM05D004654 ORTHO05D005414 5.2e-10 68.9 75 49.3
Glyma.18G046900 Glycine max HOM05D004654 ORTHO05D005414 5.2e-10 68.9 148 39.2
QL02p054970 Quercus lobata HOM05D004654 ORTHO05D005414 6.8e-10 68.6 77 61.0
MD09G1282600 Malus domestica HOM05D004654 ORTHO05D005414 1.2e-09 67.8 193 31.6
THA.LOC104805666 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 1.2e-09 67.8 173 34.7
TAR374G0741 Trochodendron aralioides HOM05D004654 ORTHO05D005414 1.2e-09 67.8 202 42.1
AL2G22850 Arabidopsis lyrata HOM05D004654 ORTHO05D005414 1.5e-09 67.4 171 33.9
CiPaw.03G260700 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.5e-09 67.4 139 41.0
FAN19G2236 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.5e-09 67.4 113 41.6
FAN26G0407 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.5e-09 67.4 113 41.6
FAN28G0174 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.5e-09 67.4 113 41.6
FAN28G0874 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.5e-09 67.4 113 41.6
TAR622G1006 Trochodendron aralioides HOM05D004654 ORTHO05D005414 1.5e-09 67.4 82 45.1
VMungo0540G1596 Vigna mungo HOM05D004654 ORTHO05D005414 2.0e-09 67.0 149 38.9
Duzib138G0480 Durio zibethinus HOM05D004654 ORTHO05D005414 2.6e-09 66.6 139 38.1
AT1G65720 Arabidopsis thaliana HOM05D004654 ORTHO05D005414 3.4e-09 66.2 171 33.3
Gohir.A08G038100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 3.4e-09 66.2 139 38.8
MD17G1272400 Malus domestica HOM05D004654 ORTHO05D005414 4.4e-09 65.9 192 33.3
Carub.0002s1154 Capsella rubella HOM05D004654 ORTHO05D005414 5.7e-09 65.5 173 33.5
TPR.G37307 Trifolium pratense HOM05D004654 ORTHO05D005414 5.7e-09 65.5 152 34.9
Aqoxy5G02573 Aquilegia oxysepala HOM05D004654 ORTHO05D005414 7.5e-09 65.1 208 31.7
CARHR057580 Cardamine hirsuta HOM05D004654 ORTHO05D005414 7.5e-09 65.1 174 33.3
GSVIVG01005258001 Vitis vinifera HOM05D004654 ORTHO05D005414 7.5e-09 65.1 79 46.8
QL02p056026 Quercus lobata HOM05D004654 ORTHO05D005414 9.8e-09 64.7 180 40.6
Ah.04g162850 Amaranthus hybridus HOM05D004654 ORTHO05D005414 1.3e-08 64.3 196 35.7
COL.COLO4_00809 Corchorus olitorius HOM05D004654 ORTHO05D005414 1.3e-08 64.3 150 36.7
Lj5C23T4 Lonicera japonica HOM05D004654 ORTHO05D005414 1.3e-08 64.3 102 40.2
Sabra04G0052000 Salix brachista HOM05D004654 ORTHO05D005414 1.3e-08 64.3 121 41.3
Eucgr.F02926 Eucalyptus grandis HOM05D004654 ORTHO05D005414 1.7e-08 63.9 125 37.6
Lj6g0008387 Lotus japonicus HOM05D004654 ORTHO05D005414 1.7e-08 63.9 79 46.8
CDE07G1822 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 2.2e-08 63.5 48 68.8
arahy.Tifrunner.gnm1.ann1.70EH4T Arachis hypogaea HOM05D004654 ORTHO05D005414 2.9e-08 63.2 95 43.2
AUR62004739 Chenopodium quinoa HOM05D004654 ORTHO05D005414 2.9e-08 63.2 181 33.7
ECA246G3021 Erigeron canadensis HOM05D004654 ORTHO05D005414 2.9e-08 63.2 110 41.8
Thhalv10019176m.g Eutrema salsugineum HOM05D004654 ORTHO05D005414 2.9e-08 63.2 155 36.1
arahy.Tifrunner.gnm1.ann1.RSI5EI Arachis hypogaea HOM05D004654 ORTHO05D005414 3.7e-08 62.8 95 41.1
Ca_15106_v3 Cicer arietinum L. HOM05D004654 ORTHO05D005414 3.7e-08 62.8 94 43.6
DCAR_014130 Daucus carota HOM05D004654 ORTHO05D005414 3.7e-08 62.8 106 44.3
Phvul.006G084100 Phaseolus vulgaris HOM05D004654 ORTHO05D005414 3.7e-08 62.8 147 34.7
MBI03_g34062_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 4.9e-08 62.4 80 43.8
MELO3C020251.2 Cucumis melo HOM05D004654 ORTHO05D005414 6.4e-08 62.0 108 40.7
Gohir.D08G048300 Gossypium hirsutum HOM05D004654 ORTHO05D005414 6.4e-08 62.0 128 41.4
Gorai.004G047800 Gossypium raimondii HOM05D004654 ORTHO05D005414 6.4e-08 62.0 128 41.4
PSO566G0049 Papaver somniferum HOM05D004654 ORTHO05D005414 6.4e-08 62.0 45 68.9
PSO566G0349 Papaver somniferum HOM05D004654 ORTHO05D005414 6.4e-08 62.0 45 68.9
PSO782G3544 Papaver somniferum HOM05D004654 ORTHO05D005414 6.4e-08 62.0 45 68.9
A07p32950 Brassica napus HOM05D004654 ORTHO05D005414 8.3e-08 61.6 39 74.4
CsaV3_3G021140 Cucumis sativus L. HOM05D004654 ORTHO05D005414 8.3e-08 61.6 108 40.7
MBI03_g05124_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 8.3e-08 61.6 74 45.9
ClCG05G011320 Citrullus lanatus HOM05D004654 ORTHO05D005414 1.1e-07 61.2 78 46.2
Lalb_Chr17g0345801 Lupinus albus HOM05D004654 ORTHO05D005414 1.1e-07 61.2 102 40.2
Medtr3g064040 Medicago truncatula HOM05D004654 ORTHO05D005414 1.1e-07 61.2 112 40.2
Psat5g143960 Pisum sativum HOM05D004654 ORTHO05D005414 1.1e-07 61.2 166 33.1
arahy.Tifrunner.gnm1.ann1.6F687N Arachis hypogaea HOM05D004654 ORTHO05D005414 1.4e-07 60.8 65 52.3
EL10Ac4g08895 Beta vulgaris HOM05D004654 ORTHO05D005414 1.4e-07 60.8 109 41.3
Nn4g24900 Nelumbo nucifera HOM05D004654 ORTHO05D005414 1.4e-07 60.8 130 43.1
Os03g0110300 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 1.8e-07 60.5 50 58.0
CDE04G3704 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 2.4e-07 60.1 156 35.9
Dinv19105 Davidia involucrata HOM05D004654 ORTHO05D005414 2.4e-07 60.1 127 36.2
FAN23G2643 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.4e-07 60.1 77 49.4
Sp5g20670 Schrenkiella parvula HOM05D004654 ORTHO05D005414 2.4e-07 60.1 173 34.1
Thecc.04G056200 Theobroma cacao HOM05D004654 ORTHO05D005414 2.4e-07 60.1 95 46.3
TAR374G0450 Trochodendron aralioides HOM05D004654 ORTHO05D005414 2.4e-07 60.1 84 50.0
BolC6t39010H Brassica oleracea HOM05D004654 ORTHO05D005414 4.1e-07 59.3 133 36.1
BraA07t30922Z Brassica rapa HOM05D004654 ORTHO05D005414 4.1e-07 59.3 134 36.6
AUR62037512 Chenopodium quinoa HOM05D004654 ORTHO05D005414 4.1e-07 59.3 179 35.2
HPP92_022519 Vanilla planifolia HOM05D004654 ORTHO05D005414 4.1e-07 59.3 91 41.8
HPP92_007306 Vanilla planifolia HOM05D004654 ORTHO05D005414 5.4e-07 58.9 39 69.2
C06p39170 Brassica napus HOM05D004654 ORTHO05D005414 7.0e-07 58.5 115 38.3
Lalb_Chr10g0103991 Lupinus albus HOM05D004654 ORTHO05D005414 7.0e-07 58.5 72 45.8
PGR004G1881 Punica granatum HOM05D004654 ORTHO05D005414 9.2e-07 58.2 117 38.5
ATR0618G257 Amborella trichopoda HOM05D004654 ORTHO05D005414 1.2e-06 57.8 40 65.0
BolC2t08298H Brassica oleracea HOM05D004654 ORTHO05D005414 1.2e-06 57.8 176 30.1
Sed0014762 Sechium edule HOM05D004654 ORTHO05D005414 2.0e-06 57.0 102 41.2
Sc09g0004620 Simmondsia chinensis HOM05D004654 ORTHO05D005414 2.0e-06 57.0 115 33.0
BcaC03g14719 Brassica carinata HOM05D004654 ORTHO05D005414 2.7e-06 56.6 76 44.7
C02p21610 Brassica napus HOM05D004654 ORTHO05D005414 2.7e-06 56.6 76 44.7
Gohir.D12G051600 Gossypium hirsutum HOM05D004654 ORTHO05D005414 2.7e-06 56.6 97 42.3
Gorai.008G054900 Gossypium raimondii HOM05D004654 ORTHO05D005414 2.7e-06 56.6 97 42.3
Gohir.A04G103050 Gossypium hirsutum HOM05D004654 ORTHO05D005414 3.5e-06 56.2 39 64.1
Lalb_Chr20g0117181 Lupinus albus HOM05D004654 ORTHO05D005414 3.5e-06 56.2 64 50.0
Ah.06g191460 Amaranthus hybridus HOM05D004654 ORTHO05D005414 4.6e-06 55.8 78 51.3
MBI06_g28670_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 4.6e-06 55.8 90 36.7
Gohir.A12G053100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 7.8e-06 55.1 97 41.2


User provided reference genes

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