Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold247G44878 Striga asiatica HOM05D003595 ORTHO05D004132 6.2e-32 141.0 122 100.0
MSTRG.18428 Avicennia marina HOM05D003595 ORTHO05D004132 7.6e-14 80.9 58 70.7
Gohir.A09G114100 Gossypium hirsutum HOM05D003595 ORTHO05D004132 3.8e-13 78.6 60 70.0
Gohir.D09G110700 Gossypium hirsutum HOM05D003595 ORTHO05D004132 3.8e-13 78.6 60 70.0
Gorai.006G128400 Gossypium raimondii HOM05D003595 ORTHO05D004132 3.8e-13 78.6 60 70.0
Oeu025870.1 Olea europaea HOM05D003595 ORTHO05D004132 1.1e-12 77.0 61 63.9
Gohir.A05G069500 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.9e-12 76.3 59 61.0
Gohir.D05G072400 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.9e-12 76.3 59 61.0
Gorai.009G073400 Gossypium raimondii HOM05D003595 ORTHO05D004132 1.9e-12 76.3 59 61.0
Duzib168G1914 Durio zibethinus HOM05D003595 ORTHO05D004132 2.4e-12 75.9 59 67.8
CiPaw.13G160700 Carya illinoinensis HOM05D003595 ORTHO05D004132 5.4e-12 74.7 60 63.3
Migut.N02319 Erythranthe guttata HOM05D003595 ORTHO05D004132 7.1e-12 74.3 61 63.9
CiPaw.14G118800 Carya illinoinensis HOM05D003595 ORTHO05D004132 9.3e-12 73.9 60 63.3
MSTRG.21376 Avicennia marina HOM05D003595 ORTHO05D004132 2.1e-11 72.8 58 63.8
Dinv18068 Davidia involucrata HOM05D003595 ORTHO05D004132 2.7e-11 72.4 57 63.2
CSS0046994 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 3.5e-11 72.0 57 63.2
CSS0047718 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 3.5e-11 72.0 57 63.2
Dinv22175 Davidia involucrata HOM05D000545 ORTHO05D000539 4.6e-11 71.6 57 63.2
Thecc.09G234200 Theobroma cacao HOM05D003595 ORTHO05D004132 4.6e-11 71.6 59 62.7
Atru.chr3.2713 Acer truncatum HOM05D003595 ORTHO05D004132 6.0e-11 71.2 60 58.3
Manes.06G164000 Manihot esculenta HOM05D003595 ORTHO05D004132 6.0e-11 71.2 59 64.4
Oeu063323.1 Olea europaea HOM05D003595 ORTHO05D004132 7.9e-11 70.9 61 59.0
Cfa009775 Carpinus fangiana HOM05D003595 ORTHO05D004132 1.3e-10 70.1 57 59.6
Manes.14G003000 Manihot esculenta HOM05D003595 ORTHO05D004132 1.3e-10 70.1 59 61.0
QL01p004672 Quercus lobata HOM05D003595 ORTHO05D004132 1.8e-10 69.7 60 60.0
VMungo1383G3074 Vigna mungo HOM05D003595 ORTHO05D004132 1.8e-10 69.7 60 56.7
Cc00_g16730 Coffea canephora HOM05D003595 ORTHO05D004132 2.3e-10 69.3 61 55.7
Migut.D00603 Erythranthe guttata HOM05D003595 ORTHO05D004132 2.3e-10 69.3 69 50.7
Glyma.19G141300 Glycine max HOM05D003595 ORTHO05D004132 2.3e-10 69.3 60 60.0
Potri.001G257700 Populus trichocarpa HOM05D003595 ORTHO05D004132 2.3e-10 69.3 59 57.6
Sabra16G0157600 Salix brachista HOM05D003595 ORTHO05D004132 2.3e-10 69.3 59 57.6
Haze_23141 Corylus avellana HOM05D003595 ORTHO05D004132 3.0e-10 68.9 60 56.7
Eucgr.B03689 Eucalyptus grandis HOM05D003595 ORTHO05D004132 3.0e-10 68.9 58 60.3
Potri.009G053000 Populus trichocarpa HOM05D003595 ORTHO05D004132 3.9e-10 68.6 59 55.9
Glyma.02G303900 Glycine max HOM05D003595 ORTHO05D004132 5.1e-10 68.2 60 55.0
ClCG03G013230 Citrullus lanatus HOM05D003595 ORTHO05D004132 6.7e-10 67.8 55 56.4
PGR102G2999 Punica granatum HOM05D003595 ORTHO05D004132 6.7e-10 67.8 58 60.3
Sed0006790 Sechium edule HOM05D003595 ORTHO05D004132 6.7e-10 67.8 55 56.4
CANSAT54G2715 Cannabis sativa HOM05D003595 ORTHO05D004132 8.7e-10 67.4 58 58.6
TWI32G0089 Tripterygium wilfordii HOM05D003595 ORTHO05D004132 8.7e-10 67.4 57 57.9
MSTRG.17593 Avicennia marina HOM05D003595 ORTHO05D004132 1.1e-09 67.0 61 59.0
MELO3C015194.2 Cucumis melo HOM05D003595 ORTHO05D004132 1.1e-09 67.0 57 56.1
Glyma.02G182300 Glycine max HOM05D003595 ORTHO05D004132 1.1e-09 67.0 62 51.6
Ca_14877_v3 Cicer arietinum L. HOM05D003595 ORTHO05D004132 1.5e-09 66.6 58 62.1
Phvul.001G135700 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 1.5e-09 66.6 59 54.2
arahy.Tifrunner.gnm1.ann1.ST54C5 Arachis hypogaea HOM05D003595 ORTHO05D004132 1.9e-09 66.2 57 56.1
Glyma.18G070800 Glycine max HOM05D003595 ORTHO05D004132 1.9e-09 66.2 59 57.6
MD11G1192700 Malus domestica HOM05D003595 ORTHO05D004132 1.9e-09 66.2 61 55.7
Phvul.006G062400 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 1.9e-09 66.2 59 59.3
Prupe.4G249800 Prunus persica HOM05D003595 ORTHO05D004132 1.9e-09 66.2 60 56.7
VMungo0540G1156 Vigna mungo HOM05D003595 ORTHO05D004132 1.9e-09 66.2 59 59.3
Glyma.08G335700 Glycine max HOM05D003595 ORTHO05D004132 2.5e-09 65.9 59 57.6
Actinidia23974 Actinidia chinensis HOM05D003595 ORTHO05D004132 3.3e-09 65.5 57 57.9
RcHm_v2.0_Chr5g0052211 Rosa chinensis HOM05D003595 ORTHO05D004132 3.3e-09 65.5 61 54.1
SGA_v2.0_scaffold42G16100 Striga asiatica HOM05D003595 ORTHO05D004132 4.3e-09 65.1 58 60.3
Actinidia06343 Actinidia chinensis HOM05D003595 ORTHO05D004132 5.6e-09 64.7 60 56.7
EL10Ac4g10246 Beta vulgaris HOM05D003595 ORTHO05D004132 5.6e-09 64.7 58 46.6
Cfa016846 Carpinus fangiana HOM05D003595 ORTHO05D004132 5.6e-09 64.7 57 49.1
Lj6g0013857 Lotus japonicus HOM05D003595 ORTHO05D004132 5.6e-09 64.7 60 56.7
Lalb_Chr18g0050501 Lupinus albus HOM05D003595 ORTHO05D004132 5.6e-09 64.7 60 55.0
MBI02_g05660_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 5.6e-09 64.7 57 57.9
MBI04_g36072_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 5.6e-09 64.7 59 57.6
CSS0007298 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 7.4e-09 64.3 60 56.7
Nn2g15359 Nelumbo nucifera HOM05D003595 ORTHO05D004132 7.4e-09 64.3 60 56.7
Nitab4.5_0002741g0180 Nicotiana tabacum HOM05D003595 ORTHO05D004132 7.4e-09 64.3 62 51.6
Cpa.g.sc84.51 Carica papaya HOM05D003595 ORTHO05D004132 9.6e-09 63.9 55 56.4
CsaV3_1G042810 Cucumis sativus L. HOM05D003595 ORTHO05D004132 9.6e-09 63.9 56 55.4
FAN16G0889 Fragaria x ananassa HOM05D003595 ORTHO05D004132 9.6e-09 63.9 61 52.5
Phvul.008G283300 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 9.6e-09 63.9 57 52.6
FvH4_3g28800 Fragaria vesca HOM05D003595 ORTHO05D004132 1.3e-08 63.5 61 52.5
FAN21G3881 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.3e-08 63.5 61 52.5
FAN25G1008 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.3e-08 63.5 61 52.5
Gohir.D07G127800 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.3e-08 63.5 52 59.6
FAN11G1213 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.6e-08 63.2 61 49.2
Sopen11g025480 Solanum pennellii HOM05D003595 ORTHO05D004132 1.6e-08 63.2 63 50.8
PGSC0003DMG400007365 Solanum tuberosum HOM05D003595 ORTHO05D004132 1.6e-08 63.2 63 49.2
THA.LOC104817909 Tarenaya hassleriana HOM05D003595 ORTHO05D004132 1.6e-08 63.2 55 58.2
Lalb_Chr20g0110801 Lupinus albus HOM05D003595 ORTHO05D004132 2.1e-08 62.8 60 56.7
TPR.G30109 Trifolium pratense HOM05D003595 ORTHO05D004132 2.8e-08 62.4 54 59.3
AL1G59180 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 3.7e-08 62.0 56 55.4
Nn7g36211 Nelumbo nucifera HOM05D003595 ORTHO05D004132 3.7e-08 62.0 57 56.1
TAR633G0913 Trochodendron aralioides HOM05D003595 ORTHO05D004132 3.7e-08 62.0 56 55.4
MD03G1174700 Malus domestica HOM05D003595 ORTHO05D004132 4.8e-08 61.6 60 55.0
GSVIVG01025255001 Vitis vinifera HOM05D003595 ORTHO05D004132 4.8e-08 61.6 55 58.2
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 6.2e-08 61.2 56 55.4
Rhsim01G0191900 Rhododendron simsii HOM05D003595 ORTHO05D004132 6.2e-08 61.2 56 57.1
Medtr3g061570 Medicago truncatula HOM05D003595 ORTHO05D004132 8.1e-08 60.8 58 53.4
Sabra06G0038000 Salix brachista HOM05D003595 ORTHO05D004132 8.1e-08 60.8 57 56.1
Thhalv10011876m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 1.1e-07 60.5 59 55.9
Potri.016G053900 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.1e-07 60.5 57 52.6
Sabra16G0057000 Salix brachista HOM05D003595 ORTHO05D004132 1.1e-07 60.5 55 60.0
VMungo0720G0045 Vigna mungo HOM05D003595 ORTHO05D004132 1.1e-07 60.5 58 51.7
Carub.0001s4023 Capsella rubella HOM05D003595 ORTHO05D004132 1.4e-07 60.1 56 51.8
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 1.8e-07 59.7 56 53.6
Gorai.001G138100 Gossypium raimondii HOM05D003595 ORTHO05D004132 1.8e-07 59.7 52 57.7
Lalb_Chr15g0082551 Lupinus albus HOM05D003595 ORTHO05D004132 1.8e-07 59.7 54 51.9
ClCG02G023190 Citrullus lanatus HOM05D003595 ORTHO05D004132 2.4e-07 59.3 56 53.6
Phvul.007G253900 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 2.4e-07 59.3 57 50.9
TAR623G0789 Trochodendron aralioides HOM05D003595 ORTHO05D004132 2.4e-07 59.3 56 53.6
TAR623G1528 Trochodendron aralioides HOM05D003595 ORTHO05D004132 2.4e-07 59.3 56 53.6
Eucgr.J00765 Eucalyptus grandis HOM05D003595 ORTHO05D004132 3.1e-07 58.9 54 53.7
Medtr1g052770 Medicago truncatula HOM05D003595 ORTHO05D004132 3.1e-07 58.9 59 50.8
QL07p021139 Quercus lobata HOM05D003595 ORTHO05D004132 3.1e-07 58.9 62 46.8
Sed0003787 Sechium edule HOM05D003595 ORTHO05D004132 3.1e-07 58.9 56 53.6
Manes.09G025100 Manihot esculenta HOM05D003595 ORTHO05D004132 4.0e-07 58.5 58 55.2
Lsat_1_v5_gn_6_48040 Lactuca sativa HOM05D003595 ORTHO05D004132 5.3e-07 58.2 52 51.9
Medtr5g096855 Medicago truncatula HOM05D003595 ORTHO05D004132 5.3e-07 58.2 59 52.5
Glyma.03G138300 Glycine max HOM05D003595 ORTHO05D004132 6.9e-07 57.8 56 53.6
AUR62000124 Chenopodium quinoa HOM05D003595 ORTHO05D004132 9.0e-07 57.4 56 44.6
AUR62019305 Chenopodium quinoa HOM05D003595 ORTHO05D004132 9.0e-07 57.4 56 44.6
Migut.J01773 Erythranthe guttata HOM05D003595 ORTHO05D004132 9.0e-07 57.4 58 50.0
Eucgr.A02382 Eucalyptus grandis HOM05D003595 ORTHO05D004132 9.0e-07 57.4 55 52.7
Potri.006G053600 Populus trichocarpa HOM05D003595 ORTHO05D004132 9.0e-07 57.4 55 56.4
Sed0023013 Sechium edule HOM05D003595 ORTHO05D004132 1.2e-06 57.0 56 50.0
Thecc.05G160100 Theobroma cacao HOM05D003595 ORTHO05D004132 1.2e-06 57.0 57 52.6
Glyma.10G100700 Glycine max HOM05D003595 ORTHO05D004132 1.5e-06 56.6 65 43.1
Aa31LG8G7720 Aethionema arabicum HOM05D003595 ORTHO05D004132 2.0e-06 56.2 51 52.9
BcaB04g20620 Brassica carinata HOM05D003595 ORTHO05D004132 2.0e-06 56.2 52 57.7
Lalb_Chr04g0247411 Lupinus albus HOM05D003595 ORTHO05D004132 2.0e-06 56.2 56 42.9
Lalb_Chr04g0247651 Lupinus albus HOM05D003595 ORTHO05D004132 2.0e-06 56.2 56 42.9
Sed0028187 Sechium edule HOM05D003595 ORTHO05D004132 2.0e-06 56.2 52 53.8
Atru.chr1.1053 Acer truncatum HOM05D003595 ORTHO05D004132 2.6e-06 55.8 64 48.4
Ciclev10006718m.g Citrus clementina HOM05D003595 ORTHO05D004132 2.6e-06 55.8 52 55.8
LjContig00081g0018996 Lotus japonicus HOM05D003595 ORTHO05D004132 2.6e-06 55.8 57 52.6
TPR.G1275 Trifolium pratense HOM05D003595 ORTHO05D004132 3.4e-06 55.5 59 50.8
AT3G20898 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 4.5e-06 55.1 52 57.7
CARHR096780 Cardamine hirsuta HOM05D003595 ORTHO05D004132 4.5e-06 55.1 52 57.7
HanXRQChr02g0056211 Helianthus annuus HOM05D003595 ORTHO05D004132 4.5e-06 55.1 52 48.1
TAR636G3263 Trochodendron aralioides HOM05D003595 ORTHO05D004132 4.5e-06 55.1 57 54.4
BolC1t04289H Brassica oleracea HOM05D003595 ORTHO05D004132 5.8e-06 54.7 56 53.6
Actinidia09350 Actinidia chinensis HOM05D003595 ORTHO05D004132 7.6e-06 54.3 57 56.1
ATR0332G104 Amborella trichopoda HOM05D003595 ORTHO05D004132 7.6e-06 54.3 53 49.1
Actinidia24526 Actinidia chinensis HOM05D003595 ORTHO05D004132 1.0e-05 53.9 57 57.9
BraA03t13349Z Brassica rapa HOM05D003595 ORTHO05D004132 1.0e-05 53.9 52 57.7


User provided reference genes

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