Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 3.8e-252 874.4 458 100.0
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 9.2e-113 411.4 488 54.9
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 9.2e-113 411.4 488 54.9
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 1.9e-110 403.7 498 51.8
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 2.7e-104 383.3 482 52.1
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 1.9e-102 377.1 477 48.8
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 2.5e-102 376.7 477 52.6
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 2.4e-100 370.2 456 51.5
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 2.4e-100 370.2 454 49.6
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 2.6e-99 366.7 494 48.6
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 4.9e-98 362.5 427 52.7
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 3.2e-97 359.8 475 49.1
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 2.3e-95 353.6 468 50.2
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 1.6e-93 347.4 492 48.0
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 3.6e-93 346.3 492 48.0
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 1.1e-92 344.7 473 47.1
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 5.8e-91 339.0 462 48.9
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 1.0e-87 328.2 493 46.0
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 4.0e-84 316.2 503 44.7
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 2.6e-83 313.5 493 42.8
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 7.6e-83 312.0 480 45.4
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 3.8e-82 309.7 489 45.6
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 4.2e-81 306.2 475 43.4
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 4.6e-80 302.8 477 42.8
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 6.0e-80 302.4 493 42.8
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 7.4e-78 295.4 387 48.6
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 2.8e-77 293.5 482 42.7
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 9.0e-76 288.5 495 40.4
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 1.5e-75 287.7 510 40.6
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 1.5e-75 287.7 507 40.6
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 3.4e-75 286.6 499 42.3
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 4.5e-75 286.2 451 44.1
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 5.8e-75 285.8 494 41.5
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 7.6e-75 285.4 487 42.5
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 1.3e-74 284.6 467 44.3
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 1.7e-74 284.3 471 42.9
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 4.9e-74 282.7 461 41.9
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 6.5e-74 282.3 497 40.2
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 5.5e-73 279.3 475 41.3
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 3.5e-72 276.6 470 41.9
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 4.6e-72 276.2 478 41.2
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 7.9e-72 275.4 425 44.5
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 1.3e-71 274.6 489 41.9
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 1.8e-71 274.2 453 43.3
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 3.0e-71 273.5 454 41.9
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 3.9e-71 273.1 410 45.1
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 5.1e-71 272.7 477 40.9
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 1.1e-70 271.6 464 40.3
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 1.5e-70 271.2 490 40.4
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 7.4e-70 268.9 487 40.5
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 2.8e-69 266.9 503 39.6
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 6.3e-69 265.8 485 41.2
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 8.2e-69 265.4 483 40.0
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 5.3e-68 262.7 464 39.4
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 6.9e-68 262.3 460 41.1
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 2.0e-67 260.8 436 42.4
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 5.9e-67 259.2 427 42.9
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 5.9e-67 259.2 480 40.0
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 7.6e-67 258.8 503 38.8
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 1.7e-66 257.7 495 40.6
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 1.7e-66 257.7 532 39.1
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 2.2e-66 257.3 462 42.2
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 3.8e-66 256.5 427 42.9
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 8.5e-66 255.4 423 41.8
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 1.1e-65 255.0 493 41.0
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 4.2e-65 253.1 501 39.3
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 4.2e-65 253.1 427 40.5
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 1.2e-64 251.5 498 38.8
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 2.1e-64 250.8 471 39.9
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 7.9e-64 248.8 451 39.9
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 1.4e-63 248.1 481 38.5
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 3.0e-63 246.9 491 39.7
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 3.0e-63 246.9 480 38.5
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 3.9e-63 246.5 496 39.3
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 5.1e-63 246.1 453 39.7
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 6.7e-63 245.7 418 41.9
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 3.3e-62 243.4 477 39.8
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 9.7e-62 241.9 478 38.3
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 6.9e-60 235.7 481 37.0
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 2.0e-59 234.2 388 43.3
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 2.0e-59 234.2 478 36.8
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 3.8e-58 229.9 392 41.8
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.1e-57 228.4 392 41.8
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 7.2e-57 225.7 446 40.1
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 1.6e-56 224.6 487 37.0
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 1.6e-56 224.6 477 36.1
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 1.6e-56 224.6 348 44.8
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 8.8e-55 218.8 487 36.6
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 1.5e-54 218.0 470 36.4
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 5.3e-52 209.5 487 35.9
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 3.4e-51 206.8 461 37.5
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 5.9e-51 206.1 497 36.4
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 2.2e-50 204.1 436 38.5
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 1.4e-49 201.4 475 36.0
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 2.1e-48 197.6 436 35.3
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 4.7e-48 196.4 475 36.2
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 1.5e-46 191.4 388 37.6
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 5.7e-46 189.5 491 34.6
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.3e-45 188.3 332 41.3
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 2.8e-45 187.2 416 38.5
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 3.7e-45 186.8 375 38.4
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 2.4e-44 184.1 445 34.8
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 2.4e-44 184.1 445 34.8
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 5.3e-44 183.0 428 35.7
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 1.2e-43 181.8 399 36.1
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 7.7e-43 179.1 305 41.6
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 6.5e-42 176.0 378 35.7
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 2.5e-41 174.1 396 36.1
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 9.4e-41 172.2 366 37.2
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 2.7e-40 170.6 481 34.9
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 1.8e-39 167.9 329 39.5
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 2.6e-38 164.1 281 41.6
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 1.3e-34 151.8 238 43.7
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 1.5e-33 148.3 368 35.6
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 9.4e-33 145.6 272 39.3
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 2.3e-31 141.0 310 36.1
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 4.0e-31 140.2 237 39.2
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 5.2e-31 139.8 242 41.7
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 9.8e-30 135.6 304 37.2
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 1.3e-29 135.2 192 46.9
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 2.8e-29 134.0 289 39.1
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 1.6e-27 128.3 223 39.0
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 6.6e-26 122.9 140 54.3
MELO3C003056.2 Cucumis melo HOM05D006039 ORTHO05D006797 8.6e-26 122.5 146 49.3
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 1.9e-25 121.3 220 41.4
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 1.5e-22 111.7 165 43.0
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 3.4e-22 110.5 297 32.3
AUR62014261 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.7e-21 108.2 206 39.8
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 5.9e-19 99.8 127 55.1
Hund07487 Selenicereus undatus HOM05D000288 ORTHO05D006797 2.3e-18 97.8 177 41.8
Hund07491 Selenicereus undatus HOM05D006039 ORTHO05D006797 7.3e-17 92.8 148 44.6
Lsat_1_v5_gn_1_67161 Lactuca sativa HOM05D006039 ORTHO05D006797 1.2e-16 92.0 89 58.4
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 8.9e-15 85.9 500 23.6
Pp3c20_22990 Physcomitrium patens HOM05D022188 ORTHO05D006797 4.6e-11 73.6 94 46.8
Pp3c6_9630 Physcomitrium patens HOM05D026113 ORTHO05D006797 7.8e-11 72.8 148 37.8
Pp3c16_7650 Physcomitrium patens HOM05D026113 ORTHO05D006797 1.3e-10 72.0 96 45.8
Pp3c23_10180 Physcomitrium patens HOM05D022188 ORTHO05D006797 1.6e-08 65.1 113 38.9
Pp3c10_11042 Physcomitrium patens HOM05D026113 ORTHO05D006797 8.0e-08 62.8 93 46.2
SEGI_29391 Sequoiadendron giganteum HOM05D022188 ORTHO05D006797 6.8e-07 59.7 94 41.5


User provided reference genes

Program Settings