Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold245G44786 Striga asiatica HOM05D008014 ORTHO05D016193 3.5e-183 644.8 321 100.0
SGA_v2.0_scaffold255G45341 Striga asiatica HOM05D000003 ORTHO05D000006 1.0e-25 121.7 96 57.3
Atru.chr7.622 Acer truncatum HOM05D000003 ORTHO05D000004 2.1e-15 87.4 108 38.9
COL.COLO4_27142 Corchorus olitorius HOM05D000003 ORTHO05D000006 2.1e-15 87.4 118 37.3
Atru.chr1.1302 Acer truncatum HOM05D000003 ORTHO05D000004 2.8e-15 87.0 106 41.5
TWI56G0972 Tripterygium wilfordii HOM05D000003 ORTHO05D000006 3.6e-15 86.7 109 40.4
Atru.chr2.1277 Acer truncatum HOM05D000003 ORTHO05D000006 8.1e-15 85.5 110 40.0
Sabra08G0134900 Salix brachista HOM05D000003 ORTHO05D000006 8.1e-15 85.5 99 39.4
TWI38G1591 Tripterygium wilfordii HOM05D000003 ORTHO05D000006 8.1e-15 85.5 141 31.2
Atru.chr2.1761 Acer truncatum HOM05D000003 ORTHO05D000004 1.4e-14 84.7 108 38.0
COL.COLO4_10338 Corchorus olitorius HOM05D000003 ORTHO05D000006 1.4e-14 84.7 107 36.4
TWI38G0333 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 2.4e-14 84.0 127 33.1
Atru.chr1.2428 Acer truncatum HOM05D000003 ORTHO05D000004 3.1e-14 83.6 108 36.1
Sabra04G0049100 Salix brachista HOM05D000003 ORTHO05D000007 3.1e-14 83.6 189 29.1
TWI81G0242 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 5.3e-14 82.8 105 39.0
Sabra15G0091800 Salix brachista HOM05D000003 ORTHO05D000007 9.0e-14 82.0 99 37.4
Atru.chr2.451 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-13 81.6 115 38.3
Atru.chr2.669 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-13 81.6 98 37.8
Atru.chr4.30 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-13 81.6 102 38.2
Atru.chr10.81 Acer truncatum HOM05D000003 ORTHO05D000004 1.5e-13 81.3 106 38.7
Lj3g0003086 Lotus japonicus HOM05D000003 ORTHO05D000006 3.4e-13 80.1 109 38.5
Atru.chr10.857 Acer truncatum HOM05D000003 ORTHO05D000004 4.5e-13 79.7 102 39.2
Atru.chr10.1301 Acer truncatum HOM05D000003 ORTHO05D000006 7.6e-13 79.0 108 35.2
FvH4_3g33091 Fragaria vesca HOM05D000003 ORTHO05D000022 7.6e-13 79.0 104 35.6
PGR119G2417 Punica granatum HOM05D000003 ORTHO05D000004 7.6e-13 79.0 110 37.3
Atru.chr1.1904 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-12 78.2 114 38.6
Thecc.09G345900 Theobroma cacao HOM05D000003 ORTHO05D016193 1.3e-12 78.2 107 33.6
Sabra09G0015300 Salix brachista HOM05D000003 ORTHO05D000006 1.7e-12 77.8 93 38.7
Manes.07G041771 Manihot esculenta HOM05D000003 ORTHO05D000006 2.9e-12 77.0 103 35.9
Manes.17G070550 Manihot esculenta HOM05D000003 ORTHO05D000006 3.8e-12 76.6 146 30.1
Atru.chr1.3365 Acer truncatum HOM05D000003 ORTHO05D000004 6.4e-12 75.9 97 36.1
Atru.chr10.629 Acer truncatum HOM05D000003 ORTHO05D000004 6.4e-12 75.9 104 36.5
Manes.13G022150 Manihot esculenta HOM05D000003 ORTHO05D000006 6.4e-12 75.9 103 35.0
Manes.17G001983 Manihot esculenta HOM05D000003 ORTHO05D000006 6.4e-12 75.9 103 35.0
Manes.18G025364 Manihot esculenta HOM05D000003 ORTHO05D000006 6.4e-12 75.9 113 34.5
Atru.chr4.104 Acer truncatum HOM05D000003 ORTHO05D000004 8.4e-12 75.5 93 32.3
Atru.chr9.1445 Acer truncatum HOM05D000003 ORTHO05D000006 8.4e-12 75.5 97 36.1
Hund00928 Selenicereus undatus HOM05D025103 ORTHO05D011840 8.4e-12 75.5 101 33.7
TPR.G22601 Trifolium pratense HOM05D000003 ORTHO05D000006 1.1e-11 75.1 101 34.7
Atru.chr5.349 Acer truncatum HOM05D000003 ORTHO05D000006 1.9e-11 74.3 89 34.8
Atru.chr5.3511 Acer truncatum HOM05D000003 ORTHO05D000006 1.9e-11 74.3 89 36.0
QL04p038160 Quercus lobata HOM05D000003 ORTHO05D000007 1.9e-11 74.3 111 37.8
CSS0047834 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.4e-11 73.9 126 33.3
Manes.14G108432 Manihot esculenta HOM05D000003 ORTHO05D000006 2.4e-11 73.9 94 36.2
Atru.chr1.956 Acer truncatum HOM05D000003 ORTHO05D000006 3.2e-11 73.6 90 38.9
Manes.07G103102 Manihot esculenta HOM05D000003 ORTHO05D000004 3.2e-11 73.6 217 25.8
Atru.chr13.1154 Acer truncatum HOM05D000003 ORTHO05D000004 4.2e-11 73.2 92 37.0
FvH4_5g34261 Fragaria vesca HOM05D000003 ORTHO05D000006 4.2e-11 73.2 150 29.3
Manes.03G165350 Manihot esculenta HOM05D012396 ORTHO05D014272 4.2e-11 73.2 92 33.7
TPR.G27282 Trifolium pratense HOM05D000003 ORTHO05D000006 4.2e-11 73.2 111 35.1
Manes.01G048981 Manihot esculenta HOM05D000003 ORTHO05D000006 5.4e-11 72.8 105 33.3
Atru.chr6.1170 Acer truncatum HOM05D000003 ORTHO05D000022 7.1e-11 72.4 114 36.0
Manes.05G206250 Manihot esculenta HOM05D000003 ORTHO05D000006 7.1e-11 72.4 103 33.0
Atru.chr7.714 Acer truncatum HOM05D000003 ORTHO05D000006 9.3e-11 72.0 89 38.2
CSS0016144 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 9.3e-11 72.0 126 32.5
QL01p018515 Quercus lobata HOM05D000003 ORTHO05D011616 9.3e-11 72.0 105 36.2
Atru.chr7.256 Acer truncatum HOM05D000003 ORTHO05D000006 1.6e-10 71.2 89 36.0
Hma1.2p1_1143F.1_g261190 Hydrangea macrophylla HOM05D000003 ORTHO05D011616 1.6e-10 71.2 113 31.9
TPR.G35113 Trifolium pratense HOM05D000003 ORTHO05D000006 1.6e-10 71.2 117 32.5
Dinv13162 Davidia involucrata HOM05D000003 ORTHO05D000006 2.1e-10 70.9 95 35.8
Thecc.03G303500 Theobroma cacao HOM05D008014 ORTHO05D009981 2.1e-10 70.9 127 32.3
CSS0039165 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.7e-10 70.5 138 31.2
COL.COLO4_12291 Corchorus olitorius HOM05D000003 ORTHO05D000007 4.6e-10 69.7 117 35.9
AUR62029183 Chenopodium quinoa HOM05D012396 ORTHO05D000006 6.0e-10 69.3 104 33.7
QL01p027762 Quercus lobata HOM05D000003 ORTHO05D000006 6.0e-10 69.3 113 32.7
QL01p027824 Quercus lobata HOM05D000003 ORTHO05D000006 6.0e-10 69.3 113 32.7
Atru.chr1.776 Acer truncatum HOM05D000003 ORTHO05D000004 7.9e-10 68.9 90 38.9
Manes.16G058825 Manihot esculenta HOM05D012396 ORTHO05D014272 7.9e-10 68.9 91 31.9
PSO782G4259 Papaver somniferum HOM05D000003 ORTHO05D000006 7.9e-10 68.9 90 34.4
AUR62014610 Chenopodium quinoa HOM05D000003 ORTHO05D011948 1.0e-09 68.6 109 27.5
AUR62035763 Chenopodium quinoa HOM05D000003 ORTHO05D000006 1.0e-09 68.6 105 28.6
Medtr1g054775 Medicago truncatula HOM05D000003 ORTHO05D000004 1.3e-09 68.2 93 34.4
EL10Ac8g19110 Beta vulgaris HOM05D000003 ORTHO05D000004 1.8e-09 67.8 110 30.9
FvH4_2g12002 Fragaria vesca HOM05D000003 ORTHO05D000006 1.8e-09 67.8 110 31.8
PSO210G5611 Papaver somniferum HOM05D000003 ORTHO05D000006 1.8e-09 67.8 106 30.2
TPR.G18288 Trifolium pratense HOM05D000003 ORTHO05D000006 1.8e-09 67.8 117 30.8
Atru.chr3.1522 Acer truncatum HOM05D000003 ORTHO05D000006 2.3e-09 67.4 89 36.0
Atru.chr9.1348 Acer truncatum HOM05D000003 ORTHO05D000006 3.0e-09 67.0 89 33.7
Atru.chr13.1905 Acer truncatum HOM05D000003 ORTHO05D000004 3.9e-09 66.6 90 40.0
PSO832G4459 Papaver somniferum HOM05D000003 ORTHO05D000006 5.1e-09 66.2 108 37.0
FvH4_2g11954 Fragaria vesca HOM05D000003 ORTHO05D000006 6.7e-09 65.9 98 32.7
Manes.05G149001 Manihot esculenta HOM05D000003 ORTHO05D000006 6.7e-09 65.9 108 27.8
Aqoxy7G01468 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 8.7e-09 65.5 117 32.5
AUR62042149 Chenopodium quinoa HOM05D012396 ORTHO05D022326 8.7e-09 65.5 109 29.4
Duzib192G0668 Durio zibethinus HOM05D000003 ORTHO05D000006 8.7e-09 65.5 111 30.6
Atru.chr7.120 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-08 65.1 92 34.8
Manes.09G048156 Manihot esculenta HOM05D000003 ORTHO05D014272 1.1e-08 65.1 113 31.0
COL.COLO4_19293 Corchorus olitorius HOM05D000155 ORTHO05D000022 1.5e-08 64.7 106 34.0
Manes.02G220001 Manihot esculenta HOM05D000003 ORTHO05D000006 1.5e-08 64.7 103 30.1
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 1.5e-08 64.7 148 25.7
CSS0029354 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.9e-08 64.3 111 32.4
Manes.08G081422 Manihot esculenta HOM05D000003 ORTHO05D000006 1.9e-08 64.3 113 30.1
FvH4_6g46881 Fragaria vesca HOM05D000003 ORTHO05D000022 2.5e-08 63.9 150 27.3
Aqoxy7G02896 Aquilegia oxysepala HOM05D000003 ORTHO05D011616 3.3e-08 63.5 111 27.9
AUR62033666 Chenopodium quinoa HOM05D000003 ORTHO05D011948 4.3e-08 63.2 111 30.6
RcHm_v2.0_Chr1g0342601 Rosa chinensis HOM05D000003 ORTHO05D000006 4.3e-08 63.2 137 25.5
TPR.G13276 Trifolium pratense HOM05D000003 ORTHO05D000004 4.3e-08 63.2 135 29.6
AUR62017627 Chenopodium quinoa HOM05D000003 ORTHO05D011948 5.6e-08 62.8 140 27.1
QL02p088210 Quercus lobata HOM05D000003 ORTHO05D000004 5.6e-08 62.8 82 29.3
ECA003G0003 Erigeron canadensis HOM05D000003 ORTHO05D000007 7.4e-08 62.4 99 33.3
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 7.4e-08 62.4 99 33.3
COL.COLO4_33181 Corchorus olitorius HOM05D000003 ORTHO05D000006 9.6e-08 62.0 90 34.4
QL11p054864 Quercus lobata HOM05D000003 ORTHO05D000007 9.6e-08 62.0 95 34.7
QL10p050539 Quercus lobata HOM05D000003 ORTHO05D000006 1.6e-07 61.2 141 27.7
Sopen12g011700 Solanum pennellii HOM05D000003 ORTHO05D000004 1.6e-07 61.2 107 32.7
CSS0020179 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.1e-07 60.8 126 30.2
COL.COLO4_13796 Corchorus olitorius HOM05D000003 ORTHO05D000007 2.1e-07 60.8 73 38.4
FvH4_2g12222 Fragaria vesca HOM05D000003 ORTHO05D000006 2.1e-07 60.8 98 30.6
FvH4_5g27994 Fragaria vesca HOM05D000003 ORTHO05D000004 2.1e-07 60.8 101 32.7
QL02p025388 Quercus lobata HOM05D000003 ORTHO05D011616 2.1e-07 60.8 135 30.4
Rhsim07G0171700 Rhododendron simsii HOM05D000003 ORTHO05D000006 2.1e-07 60.8 70 42.9
BcaC04g19510 Brassica carinata HOM05D000003 ORTHO05D000006 2.8e-07 60.5 111 32.4
TPR.G31613 Trifolium pratense HOM05D000003 ORTHO05D000007 2.8e-07 60.5 112 30.4
Aqoxy4G02040 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 3.7e-07 60.1 111 32.4
EL10Ac7g16951 Beta vulgaris HOM05D000003 ORTHO05D000006 3.7e-07 60.1 111 22.5
Cpa.g.sc39.51 Carica papaya HOM05D011552 ORTHO05D016193 3.7e-07 60.1 70 35.7
Gohir.A10G131300 Gossypium hirsutum HOM05D000003 ORTHO05D014272 3.7e-07 60.1 99 33.3
QL12p038026 Quercus lobata HOM05D022054 ORTHO05D000006 3.7e-07 60.1 142 28.2
Lj2g0021734 Lotus japonicus HOM05D000003 ORTHO05D000006 4.8e-07 59.7 92 33.7
PSO017G3046 Papaver somniferum HOM05D053590 ORTHO05D000006 4.8e-07 59.7 110 34.5
PSO478G0451 Papaver somniferum HOM05D000003 ORTHO05D000006 4.8e-07 59.7 99 31.3
PGR142G1125 Punica granatum HOM05D000003 ORTHO05D000006 4.8e-07 59.7 113 29.2
Thecc.05G092600 Theobroma cacao HOM05D000024 ORTHO05D000006 4.8e-07 59.7 97 29.9
TPR.G35752 Trifolium pratense HOM05D000003 ORTHO05D010993 4.8e-07 59.7 110 30.9
Aqoxy3G02257 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 6.2e-07 59.3 137 32.1
AUR62020937 Chenopodium quinoa HOM05D000003 ORTHO05D011948 6.2e-07 59.3 77 31.2
SGA_v2.0_scaffold255G45482 Striga asiatica HOM05D000003 ORTHO05D000006 6.2e-07 59.3 95 35.8
Atru.chr11.1396 Acer truncatum HOM05D012396 ORTHO05D014272 8.1e-07 58.9 155 29.0
Atru.chr4.172 Acer truncatum HOM05D000003 ORTHO05D000004 8.1e-07 58.9 76 34.2
Sopen00g012830 Solanum pennellii HOM05D000003 ORTHO05D000004 8.1e-07 58.9 62 43.5
Sopen08g014400 Solanum pennellii HOM05D000003 ORTHO05D000004 8.1e-07 58.9 62 43.5
Manes.17G022501 Manihot esculenta HOM05D000003 ORTHO05D000006 1.1e-06 58.5 61 36.1
RcHm_v2.0_Chr5g0053531 Rosa chinensis HOM05D000003 ORTHO05D000004 1.1e-06 58.5 98 28.6
Aqoxy3G02350 Aquilegia oxysepala HOM05D013112 ORTHO05D000006 1.4e-06 58.2 90 31.1
PSO063G2458 Papaver somniferum HOM05D000003 ORTHO05D000006 1.4e-06 58.2 100 32.0
PSO541G2151 Papaver somniferum HOM05D000003 ORTHO05D000004 1.4e-06 58.2 177 26.0
Sopen00g010420 Solanum pennellii HOM05D000003 ORTHO05D000007 1.4e-06 58.2 62 43.5
FvH4_1g29781 Fragaria vesca HOM05D010299 ORTHO05D019146 1.8e-06 57.8 84 36.9
Manes.12G050866 Manihot esculenta HOM05D020389 ORTHO05D014272 1.8e-06 57.8 72 30.6
RcHm_v2.0_Chr2g0146151 Rosa chinensis HOM05D000003 ORTHO05D000006 1.8e-06 57.8 99 27.3
Thecc.03G303800 Theobroma cacao HOM05D008014 ORTHO05D009981 1.8e-06 57.8 93 29.0
Cpa.g.sc263.17 Carica papaya HOM05D000003 ORTHO05D000006 2.4e-06 57.4 61 34.4
CiPaw.08G122600 Carya illinoinensis HOM05D000003 ORTHO05D000006 2.4e-06 57.4 98 31.6
COL.COLO4_26422 Corchorus olitorius HOM05D000003 ORTHO05D000006 2.4e-06 57.4 121 33.1
Sopen04g018170 Solanum pennellii HOM05D000003 ORTHO05D000004 2.4e-06 57.4 62 41.9
Sopen10g008120 Solanum pennellii HOM05D000003 ORTHO05D000004 2.4e-06 57.4 62 41.9
Aqoxy1G01582 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 3.1e-06 57.0 111 30.6
AUR62005006 Chenopodium quinoa HOM05D000003 ORTHO05D011948 3.1e-06 57.0 77 28.6
AUR62031169 Chenopodium quinoa HOM05D000003 ORTHO05D011948 3.1e-06 57.0 96 28.1
QL04p048382 Quercus lobata HOM05D000003 ORTHO05D011840 3.1e-06 57.0 86 32.6
QL04p091860 Quercus lobata HOM05D000003 ORTHO05D044761 3.1e-06 57.0 54 46.3
PSO210G1224 Papaver somniferum HOM05D000003 ORTHO05D000006 4.0e-06 56.6 105 31.4
Rhsim08G0149800 Rhododendron simsii HOM05D000001 ORTHO05D008374 4.0e-06 56.6 71 38.0
Sopen00g009820 Solanum pennellii HOM05D000003 ORTHO05D000004 4.0e-06 56.6 82 34.1
AUR62020928 Chenopodium quinoa HOM05D000001 ORTHO05D011365 5.3e-06 56.2 95 29.5
COL.COLO4_35459 Corchorus olitorius HOM05D013479 ORTHO05D011616 5.3e-06 56.2 63 38.1
Manes.06G066201 Manihot esculenta HOM05D039803 ORTHO05D014272 5.3e-06 56.2 87 32.2
PSO675G6789 Papaver somniferum HOM05D000003 ORTHO05D000006 6.9e-06 55.8 103 27.2
PSO832G1564 Papaver somniferum HOM05D000003 ORTHO05D000006 6.9e-06 55.8 109 29.4
CANSAT35G1482 Cannabis sativa HOM05D000003 ORTHO05D000006 9.0e-06 55.5 109 29.4
AUR62035843 Chenopodium quinoa HOM05D012396 ORTHO05D000006 9.0e-06 55.5 67 34.3
Dinv43396 Davidia involucrata HOM05D017375 ORTHO05D006516 9.0e-06 55.5 78 38.5
FvH4_6g27602 Fragaria vesca HOM05D000003 ORTHO05D000006 9.0e-06 55.5 115 27.0
PSO832G3311 Papaver somniferum HOM05D000003 ORTHO05D000006 9.0e-06 55.5 111 26.1
Rhsim11G0134900 Rhododendron simsii HOM05D003042 ORTHO05D003670 9.0e-06 55.5 65 38.5
vmacro16232 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 9.0e-06 55.5 109 29.4


User provided reference genes

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