Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 0.0e+00 1383.2 672 100.0
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 1.6e-291 1005.7 576 87.2
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.3e-285 986.1 561 88.1
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 2.0e-281 972.2 553 87.2
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 2.0e-281 972.2 553 87.2
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 2.4e-279 965.3 575 84.3
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.4e-279 965.3 574 84.7
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 4.1e-279 964.5 573 85.0
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 4.1e-279 964.5 573 85.0
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 2.7e-278 961.8 577 84.2
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 6.0e-278 960.7 575 84.5
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 1.1e-276 956.4 571 84.6
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 1.1e-276 956.4 571 84.6
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 1.1e-276 956.4 571 84.6
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 1.1e-276 956.4 571 84.6
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 8.1e-275 950.3 550 86.4
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 1.8e-274 949.1 549 87.1
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 4.0e-274 948.0 553 85.7
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 5.2e-274 947.6 550 86.2
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 8.9e-274 946.8 574 84.0
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.2e-273 946.4 553 85.5
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 7.6e-273 943.7 551 86.4
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 7.6e-273 943.7 551 86.4
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 3.8e-272 941.4 574 82.8
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 1.2e-270 936.4 550 85.5
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 1.0e-269 933.3 576 82.8
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.5e-268 928.7 552 84.4
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 1.4e-266 922.9 548 84.3
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 2.0e-265 919.1 553 84.1
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 4.3e-260 901.4 518 86.5
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 1.5e-252 876.3 604 76.5
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 1.5e-252 876.3 604 76.5
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 1.5e-252 876.3 604 76.5
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 1.5e-252 876.3 604 76.5
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 1.5e-252 876.3 604 76.5
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 1.5e-252 876.3 604 76.5
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 1.0e-248 863.6 548 80.5
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 2.3e-245 852.4 548 79.4
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 6.1e-238 827.8 575 75.3
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 1.3e-235 820.1 480 85.4
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 3.8e-232 808.5 548 76.3
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 4.2e-231 805.1 573 74.0
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 9.4e-231 803.9 477 85.1
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 5.9e-193 678.3 489 72.8
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 6.6e-192 674.9 392 86.2
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.3e-184 649.8 538 67.7
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 3.1e-181 639.4 392 82.9
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 2.5e-175 619.8 373 84.2
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 2.5e-175 619.8 373 84.2
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 3.3e-175 619.4 360 86.4
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 2.8e-174 616.3 399 79.9
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 1.4e-173 614.0 373 83.6
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 3.1e-173 612.8 373 83.4
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 1.5e-172 610.5 373 83.1
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 4.6e-169 599.0 554 59.6
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 2.5e-167 593.2 459 68.0
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 1.1e-165 587.8 425 72.2
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 8.9e-165 584.7 399 76.2
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 5.4e-162 575.5 361 80.9
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 2.1e-161 573.5 318 89.6
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 3.9e-160 569.3 390 77.2
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 4.3e-159 565.8 372 79.0
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.2e-156 557.8 471 65.8
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 2.3e-144 516.9 293 89.4
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 7.1e-138 495.4 549 52.5
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 4.6e-137 492.7 549 52.3
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 6.2e-134 482.3 306 80.1
SHI54813 Sapria himalayana HOM05D003783 ORTHO05D004568 3.8e-131 473.0 293 81.9
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 1.0e-128 464.9 260 89.2
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 3.4e-124 449.9 286 79.4
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.1e-121 440.7 248 86.3
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 4.6e-121 439.5 269 82.2
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 1.4e-117 427.9 373 64.3
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 3.1e-117 426.8 239 90.0
Solyc11g063620.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.7e-115 421.0 277 79.1
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 2.7e-113 413.7 243 85.2
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 5.1e-112 409.5 268 78.0
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 1.2e-108 398.3 318 69.5
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 1.2e-108 398.3 318 69.5
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 1.2e-105 388.3 369 58.8
ATR1173G003 Amborella trichopoda HOM05D003783 ORTHO05D004568 9.1e-101 372.1 242 75.2
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 5.5e-98 362.8 842 36.9
CAN.G134.19 Capsicum annuum HOM05D003783 ORTHO05D004568 1.8e-96 357.8 259 69.9
BolSC28t60416H Brassica oleracea HOM05D003783 ORTHO05D004568 6.7e-96 355.9 235 76.2
Lsat_1_v5_gn_4_139080 Lactuca sativa HOM05D003783 ORTHO05D004568 7.5e-95 352.4 218 81.2
Sp3g25860 Schrenkiella parvula HOM05D003783 ORTHO05D004568 2.2e-94 350.9 202 84.7
BraSC48t46298Z Brassica rapa HOM05D003783 ORTHO05D004568 5.3e-93 346.3 200 84.5
BraSC48t46316Z Brassica rapa HOM05D003783 ORTHO05D004568 5.3e-93 346.3 200 84.5
BraSC177t45761Z Brassica rapa HOM05D003783 ORTHO05D004568 2.0e-92 344.4 200 84.0
BcaC09g49589 Brassica carinata HOM05D003783 ORTHO05D004568 7.2e-90 335.9 235 71.9
AL3G44470 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 1.6e-89 334.7 193 84.5
CARHR283230 Cardamine hirsuta HOM05D003783 ORTHO05D004568 1.4e-88 331.6 193 83.9
C01p34860 Brassica napus HOM05D003783 ORTHO05D004568 3.0e-88 330.5 236 70.8
Psat7g150720 Pisum sativum HOM05D003783 ORTHO05D004568 4.4e-87 326.6 285 64.2
Sopen05g012690 Solanum pennellii HOM05D003783 ORTHO05D004568 8.3e-86 322.4 198 84.8
C01p34760 Brassica napus HOM05D003783 ORTHO05D004568 9.1e-85 318.9 235 69.4
HanXRQChr11g0334171 Helianthus annuus HOM05D003783 ORTHO05D004568 9.5e-82 308.9 191 80.6
HanXRQChr17g0544021 Helianthus annuus HOM05D003783 ORTHO05D004568 9.5e-82 308.9 191 80.6
PSO782G0649 Papaver somniferum HOM05D003783 ORTHO05D004568 3.6e-81 307.0 259 62.9
TPR.G22134 Trifolium pratense HOM05D003783 ORTHO05D004568 3.6e-81 307.0 175 85.7
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 1.2e-79 302.0 182 85.7
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 2.6e-79 300.8 191 82.7
PSO135G0232 Papaver somniferum HOM05D003783 ORTHO05D004568 1.1e-77 295.4 259 61.8
PSO675G6716 Papaver somniferum HOM05D003783 ORTHO05D004568 2.4e-77 294.3 259 60.6
BraSC48t46228Z Brassica rapa HOM05D003783 ORTHO05D004568 2.7e-76 290.8 144 94.4
Nitab4.5_0002589g0080 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.5e-76 290.4 303 52.8
MSTRG.27795 Avicennia marina HOM05D003783 ORTHO05D004568 3.8e-75 287.0 163 86.5
BolSC28t60306H Brassica oleracea HOM05D003783 ORTHO05D004568 1.3e-70 271.9 235 60.9
BolSC28t60363H Brassica oleracea HOM05D003783 ORTHO05D004568 1.3e-70 271.9 235 60.9
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 4.9e-70 270.0 227 64.3
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 1.4e-69 268.5 249 55.8
MBI19_g47479_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 3.5e-68 263.8 181 76.8
CARHR287240 Cardamine hirsuta HOM05D003783 ORTHO05D004568 3.3e-66 257.3 219 67.6
arahy.Tifrunner.gnm1.ann1.BUQ0M3 Arachis hypogaea HOM05D003783 ORTHO05D004568 3.6e-65 253.8 160 83.1
Nitab4.5_0008535g0060 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.0e-59 235.7 149 79.2
BcaC09g49594 Brassica carinata HOM05D003783 ORTHO05D004568 1.6e-57 228.4 136 85.3
DCAR_032038 Daucus carota HOM05D003783 ORTHO05D004568 2.1e-57 228.0 121 93.4
BraSC224t45815Z Brassica rapa HOM05D003783 ORTHO05D004568 2.3e-56 224.6 143 74.8
BolSC28t60383H Brassica oleracea HOM05D003783 ORTHO05D004568 4.0e-56 223.8 120 85.8
CAN.G1439.7 Capsicum annuum HOM05D003783 ORTHO05D004568 3.4e-55 220.7 148 73.6
BolC1t03458H Brassica oleracea HOM05D003783 ORTHO05D004568 1.7e-51 208.4 116 82.8
HanXRQChr01g0013391 Helianthus annuus HOM05D003783 ORTHO05D004568 3.0e-51 207.6 134 77.6
Lj2P1232T100 Lonicera japonica HOM05D003783 ORTHO05D004568 3.9e-51 207.2 132 80.3
BolC1t03452H Brassica oleracea HOM05D003783 ORTHO05D004568 2.5e-50 204.5 112 87.5
Nitab4.5_0004300g0270 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.8e-49 201.1 120 85.8
CAN.G1439.8 Capsicum annuum HOM05D003783 ORTHO05D004568 6.2e-49 199.9 247 50.2
Sc22g0004100 Simmondsia chinensis HOM05D003783 ORTHO05D004568 5.2e-48 196.8 113 85.8
CAN.G1576.3 Capsicum annuum HOM05D003783 ORTHO05D004568 1.5e-47 195.3 130 76.9
TPR.G885 Trifolium pratense HOM05D003783 ORTHO05D004568 4.9e-46 190.3 116 85.3
Lsat_1_v5_gn_8_111800 Lactuca sativa HOM05D003783 ORTHO05D004568 1.7e-43 181.8 122 78.7
ClCG09G015160 Citrullus lanatus HOM05D003783 ORTHO05D004568 3.3e-42 177.6 98 90.8
Lsat_1_v5_gn_5_16140 Lactuca sativa HOM05D003783 ORTHO05D004568 3.3e-42 177.6 123 76.4
AT2G07768 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 5.6e-42 176.8 120 77.5
PGR028G0013 Punica granatum HOM05D003783 ORTHO05D004568 1.2e-39 169.1 122 73.8
Solyc04g049870.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.6e-39 167.9 331 39.3
Lsat_1_v5_gn_4_3660 Lactuca sativa HOM05D003783 ORTHO05D001069 2.2e-38 164.9 111 74.8
Nitab4.5_0000172g1380 Nicotiana tabacum HOM05D003783 ORTHO05D004568 7.1e-37 159.8 161 58.4
BraSC48t46252Z Brassica rapa HOM05D003783 ORTHO05D004568 7.8e-36 156.4 115 70.4
Nitab4.5_0002888g0030 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.3e-34 151.0 94 84.0
BolC1t03443H Brassica oleracea HOM05D003783 ORTHO05D004568 4.3e-34 150.6 91 83.5
Lalb_Chr11g0068271 Lupinus albus HOM05D003783 ORTHO05D004568 5.3e-32 143.7 77 84.4
BraSC48t46351Z Brassica rapa HOM05D003783 ORTHO05D004568 7.6e-31 139.8 100 73.0
QL02p008127 Quercus lobata HOM05D003783 ORTHO05D004568 9.9e-31 139.4 75 88.0
SHI32491 Sapria himalayana HOM05D003783 ORTHO05D004568 1.6e-25 122.1 348 31.6
CAN.G124.8 Capsicum annuum HOM05D003783 ORTHO05D004568 2.1e-25 121.7 93 71.0
Dinv06615 Davidia involucrata HOM05D003783 ORTHO05D011738 8.1e-25 119.8 65 87.7
BraSC54t46361Z Brassica rapa HOM05D003783 ORTHO05D004568 1.1e-24 119.4 66 89.4
Nitab4.5_0011099g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.0e-23 115.2 62 90.3
Ciclev10003580m.g Citrus clementina HOM05D003783 ORTHO05D004568 1.3e-22 112.5 122 53.3
CAN.G1439.6 Capsicum annuum HOM05D003783 ORTHO05D004568 5.5e-21 107.1 60 80.0
Solyc10g048130.3 Solanum lycopersicum HOM05D003783 ORTHO05D004568 7.1e-21 106.7 166 41.6
Solyc02g050290.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.0e-19 102.8 74 73.0
Ah.01g011720 Amaranthus hybridus HOM05D003783 ORTHO05D013694 1.9e-18 98.6 70 70.0
Solyc08g029270.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.5e-18 98.2 64 70.3
SHI26670 Sapria himalayana HOM05D003783 ORTHO05D004568 4.3e-18 97.4 70 67.1
Lalb_Chr22g0357831 Lupinus albus HOM05D003783 ORTHO05D004568 5.6e-18 97.1 71 67.6
TPR.G13188 Trifolium pratense HOM05D003783 ORTHO05D004568 6.2e-17 93.6 51 74.5
Lalb_Chr22g0357821 Lupinus albus HOM05D003783 ORTHO05D004568 7.6e-15 86.7 83 53.0
Nitab4.5_0002739g0140 Nicotiana tabacum HOM05D003783 ORTHO05D015637 3.8e-14 84.3 43 90.7
C05p22550 Brassica napus HOM05D003783 ORTHO05D004568 2.5e-13 81.6 48 83.3
Solyc12g035895.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 5.5e-13 80.5 147 38.8
Nitab4.5_0005837g0060 Nicotiana tabacum HOM05D000102 ORTHO05D000138 7.1e-13 80.1 48 79.2
Solyc06g065880.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.2e-12 79.3 115 44.3
ATR1173G002 Amborella trichopoda HOM05D003783 ORTHO05D004568 6.0e-12 77.0 51 72.5
BolC5t30954H Brassica oleracea HOM05D003783 ORTHO05D004568 1.8e-11 75.5 48 79.2
SHI26671 Sapria himalayana HOM05D003783 ORTHO05D004568 1.8e-11 75.5 67 58.2
SEGI_06792 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 5.7e-10 70.5 54 68.5
DCAR_004797 Daucus carota HOM05D003783 ORTHO05D004568 7.4e-10 70.1 30 96.7
Actinidia31963 Actinidia chinensis HOM05D000944 ORTHO05D003581 1.3e-09 69.3 53 66.0
SHI11506 Sapria himalayana HOM05D003783 ORTHO05D004568 1.3e-09 69.3 45 73.3
SHI26672 Sapria himalayana HOM05D003783 ORTHO05D004568 1.6e-09 68.9 65 61.5
Solyc12g035910.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.6e-09 68.9 49 69.4
Aqoxy1G02245 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 6.3e-09 67.0 60 63.3
Nitab4.5_0011099g0020 Nicotiana tabacum HOM05D003783 ORTHO05D004568 6.3e-09 67.0 37 78.4
CAN.G1439.3 Capsicum annuum HOM05D002965 ORTHO05D010183 1.8e-08 65.5 50 58.0
Aa31csc822G30 Aethionema arabicum HOM05D001987 ORTHO05D006514 2.4e-08 65.1 177 28.2
SHI28703 Sapria himalayana HOM05D003783 ORTHO05D004568 2.4e-08 65.1 138 37.7
Peaxi162Scf00720g00065 Petunia axillaris HOM05D003783 ORTHO05D004568 6.9e-08 63.5 35 77.1
CAN.G60.11 Capsicum annuum HOM05D001322 ORTHO05D001301 2.2e-06 58.5 35 82.9


User provided reference genes

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