Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold245G44628 Striga asiatica HOM05D002660 ORTHO05D003902 1.1e-77 293.1 141 100.0
LjContig00315g0012920 Lotus japonicus HOM05D002660 ORTHO05D003902 3.8e-33 145.2 109 64.2
Glyma.08G300900 Glycine max HOM05D002660 ORTHO05D003902 1.3e-30 136.7 100 66.0
RcHm_v2.0_MTg0498601 Rosa chinensis HOM05D002660 ORTHO05D003902 1.7e-25 119.8 111 50.5
Lj5g0008059 Lotus japonicus HOM05D002660 ORTHO05D003902 2.2e-25 119.4 93 62.4
VMungo0985G0011 Vigna mungo HOM05D008696 ORTHO05D002807 2.9e-25 119.0 99 61.6
ATR0502G001 Amborella trichopoda HOM05D002660 ORTHO05D003902 9.4e-24 114.0 129 45.7
CAN.G1167.16 Capsicum annuum HOM05D002660 ORTHO05D003902 6.1e-23 111.3 136 44.1
CAN.G248.9 Capsicum annuum HOM05D002660 ORTHO05D003902 1.4e-22 110.2 134 44.8
CAN.G1109.11 Capsicum annuum HOM05D002660 ORTHO05D003902 2.3e-22 109.4 136 43.4
CAN.G1001.30 Capsicum annuum HOM05D002660 ORTHO05D003902 2.0e-21 106.3 133 42.1
CAN.G1.6 Capsicum annuum HOM05D002660 ORTHO05D003902 4.4e-21 105.1 131 42.7
arahy.Tifrunner.gnm1.ann1.8U7R2G Arachis hypogaea HOM05D002660 ORTHO05D003902 7.4e-21 104.4 132 43.2
arahy.Tifrunner.gnm1.ann1.BS65NI Arachis hypogaea HOM05D002660 ORTHO05D003902 7.4e-21 104.4 132 43.2
arahy.Tifrunner.gnm1.ann1.ET7F5Q Arachis hypogaea HOM05D002660 ORTHO05D003902 7.4e-21 104.4 132 43.2
arahy.Tifrunner.gnm1.ann1.P7KX5B Arachis hypogaea HOM05D002660 ORTHO05D003902 7.4e-21 104.4 132 43.2
arahy.Tifrunner.gnm1.ann1.QMNG84 Arachis hypogaea HOM05D002660 ORTHO05D003902 7.4e-21 104.4 132 43.2
arahy.Tifrunner.gnm1.ann1.NU84BI Arachis hypogaea HOM05D000388 ORTHO05D000473 2.8e-20 102.4 136 42.6
Solyc00g500104.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.8e-20 102.4 134 44.0
Solyc00g500181.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.8e-20 102.4 134 44.0
Solyc00g500227.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.8e-20 102.4 134 44.0
Solyc00g500263.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.8e-20 102.4 134 44.0
Solyc00g500350.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.8e-20 102.4 134 44.0
Solyc11g063540.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.8e-20 102.4 134 44.0
PGSC0003DMG400033607 Solanum tuberosum HOM05D002660 ORTHO05D003902 2.8e-20 102.4 134 44.0
Sopen00g006790 Solanum pennellii HOM05D002660 ORTHO05D003902 3.7e-20 102.1 132 43.9
Sopen05g012620 Solanum pennellii HOM05D002660 ORTHO05D003902 3.7e-20 102.1 132 43.9
Lalb_Chr00c24g0406851 Lupinus albus HOM05D002660 ORTHO05D003902 4.8e-20 101.7 102 46.1
CAN.G841.4 Capsicum annuum HOM05D002660 ORTHO05D003902 8.2e-20 100.9 134 42.5
CAN.G950.7 Capsicum annuum HOM05D002660 ORTHO05D003902 3.1e-19 99.0 130 46.2
arahy.Tifrunner.gnm1.ann1.HMG3T6 Arachis hypogaea HOM05D002660 ORTHO05D003902 9.1e-19 97.4 132 40.9
Lsat_1_v5_gn_5_13340 Lactuca sativa HOM05D002660 ORTHO05D003902 1.5e-18 96.7 90 52.2
Dinv06680 Davidia involucrata HOM05D002660 ORTHO05D011644 2.0e-18 96.3 137 43.1
MBI05_g05343_MAGBIO Magnolia biondii HOM05D000445 ORTHO05D000314 4.5e-18 95.1 140 40.7
MBI14_g38259_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D010725 5.9e-18 94.7 114 43.9
Peaxi162Scf00625g00037 Petunia axillaris HOM05D002660 ORTHO05D003902 7.7e-18 94.4 134 42.5
SGA_v2.0_scaffold601G53131 Striga asiatica HOM05D002660 ORTHO05D003902 7.7e-18 94.4 128 40.6
Nitab4.5_0012260g0040 Nicotiana tabacum HOM05D002660 ORTHO05D003902 1.0e-17 94.0 133 39.1
Sed0016072 Sechium edule HOM05D002660 ORTHO05D003902 2.9e-17 92.4 133 41.4
Sed0020463 Sechium edule HOM05D002660 ORTHO05D003902 2.9e-17 92.4 133 41.4
AT2G07749 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 1.9e-16 89.7 134 41.8
ATMG01110 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 1.9e-16 89.7 134 41.8
BcaC05g26896 Brassica carinata HOM05D002660 ORTHO05D003902 1.9e-16 89.7 134 41.8
BcaC08g43707 Brassica carinata HOM05D002660 ORTHO05D003902 1.9e-16 89.7 134 41.8
BNapus_Darmor_BZH_scaffold_234p00270 Brassica napus HOM05D002660 ORTHO05D003902 1.9e-16 89.7 134 41.8
BolSC28t60340H Brassica oleracea HOM05D002660 ORTHO05D003902 1.9e-16 89.7 134 41.8
CARHR283370 Cardamine hirsuta HOM05D002660 ORTHO05D003902 1.9e-16 89.7 134 41.8
Nitab4.5_0000031g0200 Nicotiana tabacum HOM05D002660 ORTHO05D003902 3.2e-16 89.0 131 38.2
Nitab4.5_0001607g0070 Nicotiana tabacum HOM05D002660 ORTHO05D003902 5.5e-16 88.2 129 40.3
SHI41394 Sapria himalayana HOM05D002660 ORTHO05D003902 5.5e-16 88.2 77 55.8
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 9.4e-16 87.4 121 43.0
Solyc03g063470.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.7e-15 85.9 121 41.3
Sed0026029 Sechium edule HOM05D003467 ORTHO05D004220 3.6e-15 85.5 129 41.1
MBI14_g44092_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 4.7e-15 85.1 99 45.5
TAR626G0574 Trochodendron aralioides HOM05D002660 ORTHO05D003902 6.1e-15 84.7 121 39.7
CAN.G140.15 Capsicum annuum HOM05D002660 ORTHO05D003902 1.8e-14 83.2 95 47.4
CAN.G993.8 Capsicum annuum HOM05D002660 ORTHO05D003902 3.9e-14 82.0 141 36.9
MBI05_g05346_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 3.9e-14 82.0 113 41.6
Gorai.009G406600 Gossypium raimondii HOM05D002660 ORTHO05D003902 5.2e-14 81.6 97 43.3
SGA_v2.0_scaffold479G52276 Striga asiatica HOM05D002660 ORTHO05D003902 6.7e-14 81.3 90 50.0
Psat4g178320 Pisum sativum HOM05D002660 ORTHO05D003902 8.8e-14 80.9 95 40.0
Aa31csc1168G10 Aethionema arabicum HOM05D002660 ORTHO05D003902 1.1e-13 80.5 86 50.0
CAN.G1355.2 Capsicum annuum HOM05D002660 ORTHO05D003902 1.1e-13 80.5 142 36.6
Gorai.001G162700 Gossypium raimondii HOM05D002660 ORTHO05D003902 1.1e-13 80.5 91 45.1
PGSC0003DMG400006470 Solanum tuberosum HOM05D002660 ORTHO05D003902 1.1e-13 80.5 100 44.0
TAR371G0124 Trochodendron aralioides HOM05D002660 ORTHO05D003902 2.6e-13 79.3 113 39.8
Cfa021334 Carpinus fangiana HOM05D002660 ORTHO05D003902 3.3e-13 79.0 116 37.1
CAN.G85.22 Capsicum annuum HOM05D002660 ORTHO05D003902 5.7e-13 78.2 101 43.6
Glyma.12G175100 Glycine max HOM05D002660 ORTHO05D003902 5.7e-13 78.2 85 49.4
CSS0017389 Camellia sinensis var. sinensis HOM05D002660 ORTHO05D003902 9.7e-13 77.4 115 40.0
SalBow1G8110 Salvia bowleyana HOM05D002660 ORTHO05D003902 9.7e-13 77.4 67 50.7
Actinidia02791 Actinidia chinensis HOM05D002660 ORTHO05D003902 2.2e-12 76.3 92 40.2
Nitab4.5_0003758g0080 Nicotiana tabacum HOM05D002660 ORTHO05D003902 2.8e-12 75.9 90 43.3
Lsat_1_v5_gn_5_172580 Lactuca sativa HOM05D002660 ORTHO05D003902 4.8e-12 75.1 75 50.7
SalBow7G1147 Salvia bowleyana HOM05D002660 ORTHO05D009845 6.3e-12 74.7 78 47.4
Sc05g0004260 Simmondsia chinensis HOM05D002660 ORTHO05D003902 6.3e-12 74.7 82 45.1
ATMG01410 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 1.1e-11 73.9 65 50.8
COL.COLO4_02507 Corchorus olitorius HOM05D002660 ORTHO05D003902 2.4e-11 72.8 57 57.9
CsaV3_UNG207980 Cucumis sativus L. HOM05D002660 ORTHO05D003902 3.1e-11 72.4 124 37.9
Medtr0212s0050 Medicago truncatula HOM05D002660 ORTHO05D003902 2.6e-10 69.3 69 46.4
Nitab4.5_0001796g0170 Nicotiana tabacum HOM05D002660 ORTHO05D003902 2.6e-10 69.3 120 34.2
arahy.Tifrunner.gnm1.ann1.KE43QT Arachis hypogaea HOM05D002660 ORTHO05D007974 3.5e-10 68.9 99 37.4
arahy.Tifrunner.gnm1.ann1.QE4HQU Arachis hypogaea HOM05D002660 ORTHO05D007974 3.5e-10 68.9 99 37.4
Oeu021479.1 Olea europaea HOM05D002660 ORTHO05D011706 3.5e-10 68.9 49 57.1
CAN.G1594.3 Capsicum annuum HOM05D002660 ORTHO05D011674 4.5e-10 68.6 141 33.3
Cpa.g.sc263.18 Carica papaya HOM05D002660 ORTHO05D003902 1.0e-09 67.4 115 34.8
Lsat_1_v5_gn_8_124640 Lactuca sativa HOM05D002660 ORTHO05D003902 1.0e-09 67.4 83 44.6
Lsat_1_v5_gn_8_93860 Lactuca sativa HOM05D002660 ORTHO05D003902 1.0e-09 67.4 83 44.6
Oeu022571.1 Olea europaea HOM05D001387 ORTHO05D001250 1.0e-09 67.4 80 43.8
Ca_07940_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 1.3e-09 67.0 69 44.9
Ca_08791_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 1.3e-09 67.0 69 44.9
Ca_22174_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 1.3e-09 67.0 69 44.9
CAN.G1.4 Capsicum annuum HOM05D002660 ORTHO05D003902 1.7e-09 66.6 89 39.3
SGA_v2.0_scaffold420G51340 Striga asiatica HOM05D002660 ORTHO05D003902 1.7e-09 66.6 79 46.8
Nn1g10113 Nelumbo nucifera HOM05D002660 ORTHO05D003902 2.9e-09 65.9 75 45.3
Ca_26184_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 3.8e-09 65.5 69 43.5
Sopen11g012750 Solanum pennellii HOM05D002660 ORTHO05D003902 8.5e-09 64.3 113 34.5
Nitab4.5_0000172g2140 Nicotiana tabacum HOM05D002660 ORTHO05D003902 1.1e-08 63.9 113 36.3
Peaxi162Scf00625g00034 Petunia axillaris HOM05D002660 ORTHO05D003902 1.9e-08 63.2 85 43.5
Sed0024408 Sechium edule HOM05D002660 ORTHO05D003902 1.9e-08 63.2 53 50.9
BraSC77t46647Z Brassica rapa HOM05D002660 ORTHO05D003902 4.2e-08 62.0 122 35.2
Sopen11g018230 Solanum pennellii HOM05D002660 ORTHO05D003902 4.2e-08 62.0 109 36.7
Nitab4.5_0001152g0860 Nicotiana tabacum HOM05D002660 ORTHO05D003902 5.5e-08 61.6 113 35.4
MBI14_g38258_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 9.4e-08 60.8 40 60.0
Nitab4.5_0009256g0020 Nicotiana tabacum HOM05D002660 ORTHO05D003902 2.1e-07 59.7 113 35.4
arahy.Tifrunner.gnm1.ann1.2INJ5A Arachis hypogaea HOM05D002660 ORTHO05D003902 3.6e-07 58.9 42 57.1
BraSC177t45771Z Brassica rapa HOM05D002660 ORTHO05D003902 3.6e-07 58.9 98 38.8
BraSC48t46265Z Brassica rapa HOM05D002660 ORTHO05D003902 3.6e-07 58.9 98 38.8
Lj2A1234T113 Lonicera japonica HOM05D002660 ORTHO05D003902 3.6e-07 58.9 118 32.2
Nn1g10106 Nelumbo nucifera HOM05D002660 ORTHO05D003902 8.0e-07 57.8 55 47.3
Nn1g10197 Nelumbo nucifera HOM05D002660 ORTHO05D003902 8.0e-07 57.8 55 47.3
Peaxi162Scf01528g00009 Petunia axillaris HOM05D010952 ORTHO05D017366 8.0e-07 57.8 138 29.7
TPR.G40534 Trifolium pratense HOM05D002660 ORTHO05D003902 1.0e-06 57.4 67 43.3
Peaxi162Scf00611g00057 Petunia axillaris HOM05D002660 ORTHO05D003902 1.4e-06 57.0 95 35.8
MBI14_g44090_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 2.3e-06 56.2 40 60.0
Solyc00g142170.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.3e-06 56.2 59 49.2
Solyc00g500255.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.3e-06 56.2 59 49.2
PGSC0003DMG400001137 Solanum tuberosum HOM05D002660 ORTHO05D003902 2.3e-06 56.2 59 49.2
arahy.Tifrunner.gnm1.ann1.KBVE6B Arachis hypogaea HOM05D002660 ORTHO05D003902 4.0e-06 55.5 88 36.4
Nitab4.5_0001023g0120 Nicotiana tabacum HOM05D002660 ORTHO05D003902 4.0e-06 55.5 42 50.0
BolC6t36210H Brassica oleracea HOM05D002660 ORTHO05D003902 5.2e-06 55.1 98 36.7
HPP92_006535 Vanilla planifolia HOM05D002660 ORTHO05D003902 5.2e-06 55.1 77 39.0
BcaC08g43703 Brassica carinata HOM05D002660 ORTHO05D003902 6.7e-06 54.7 105 35.2
CAN.G85.19 Capsicum annuum HOM05D002660 ORTHO05D003902 8.8e-06 54.3 49 57.1
SGA_v2.0_scaffold255G45343 Striga asiatica HOM05D000003 ORTHO05D000006 8.8e-06 54.3 63 41.3


User provided reference genes

Program Settings