Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold245G44590 Striga asiatica HOM05D000002 ORTHO05D000001 1.7e-171 605.9 297 100.0
Hma1.2p1_0706F.1_g207010 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 6.6e-11 72.4 95 45.3
C08p15500 Brassica napus HOM05D000002 ORTHO05D000075 1.9e-10 70.9 104 40.4
MD07G1259300 Malus domestica HOM05D000002 ORTHO05D000157 1.2e-09 68.2 98 43.9
MD12G1052500 Malus domestica HOM05D000002 ORTHO05D000001 1.2e-09 68.2 98 43.9
Sopen01g017610 Solanum pennellii HOM05D000002 ORTHO05D009932 1.6e-09 67.8 80 43.8
Sopen01g025080 Solanum pennellii HOM05D000002 ORTHO05D000001 1.6e-09 67.8 80 43.8
Sopen02g037750 Solanum pennellii HOM05D000002 ORTHO05D000001 1.6e-09 67.8 80 43.8
Sopen07g006410 Solanum pennellii HOM05D000002 ORTHO05D000001 1.6e-09 67.8 80 43.8
Sopen07g029680 Solanum pennellii HOM05D000002 ORTHO05D000001 1.6e-09 67.8 80 43.8
Sopen07g031580 Solanum pennellii HOM05D000002 ORTHO05D000001 1.6e-09 67.8 80 43.8
Sopen08g004430 Solanum pennellii HOM05D000002 ORTHO05D000001 1.6e-09 67.8 80 43.8
Sopen10g024730 Solanum pennellii HOM05D000002 ORTHO05D000001 1.6e-09 67.8 80 43.8
Sopen12g022570 Solanum pennellii HOM05D000002 ORTHO05D000001 1.6e-09 67.8 80 43.8
Ah.11g039570 Amaranthus hybridus HOM05D000002 ORTHO05D000001 1.1e-08 65.1 185 34.1
Atru.chr2.3035 Acer truncatum HOM05D000002 ORTHO05D000001 1.4e-08 64.7 111 36.0
CSS0011046 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.4e-08 64.7 99 42.4
MD11G1146000 Malus domestica HOM05D000002 ORTHO05D000001 2.3e-08 63.9 98 45.9
Atru.chr3.3480 Acer truncatum HOM05D000002 ORTHO05D000001 3.1e-08 63.5 82 42.7
Nn2g11548 Nelumbo nucifera HOM05D000002 ORTHO05D000001 5.2e-08 62.8 78 44.9
Solyc05g015654.1 Solanum lycopersicum HOM05D000002 ORTHO05D000001 5.2e-08 62.8 80 41.2
ClCG05G012250 Citrullus lanatus HOM05D000002 ORTHO05D000001 1.2e-07 61.6 90 42.2
CSS0039053 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.5e-07 61.2 180 32.2
MD09G1100700 Malus domestica HOM05D000002 ORTHO05D000001 1.5e-07 61.2 98 37.8
MD17G1115400 Malus domestica HOM05D000002 ORTHO05D000001 1.5e-07 61.2 98 40.8
THA.LOC104807900 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 1.5e-07 61.2 155 32.9
MD04G1231400 Malus domestica HOM05D000002 ORTHO05D000001 2.0e-07 60.8 104 35.6
Sed0021821 Sechium edule HOM05D000002 ORTHO05D000001 2.6e-07 60.5 97 37.1
TPR.G429 Trifolium pratense HOM05D000002 ORTHO05D000001 2.6e-07 60.5 111 35.1
Nn8g39601 Nelumbo nucifera HOM05D000002 ORTHO05D000001 3.4e-07 60.1 78 42.3
Atru.chr2.2580 Acer truncatum HOM05D000002 ORTHO05D000001 5.8e-07 59.3 182 31.3
CSS0042232 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.8e-07 59.3 180 31.7
Hma1.2p1_0672F.1_g201120 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 5.8e-07 59.3 88 38.6
Actinidia03788 Actinidia chinensis HOM05D000002 ORTHO05D000001 9.8e-07 58.5 110 30.9
Sabra06G0056900 Salix brachista HOM05D000002 ORTHO05D000001 9.8e-07 58.5 93 38.7
TPR.G18516 Trifolium pratense HOM05D000002 ORTHO05D000001 9.8e-07 58.5 101 36.6
Actinidia07495 Actinidia chinensis HOM05D000002 ORTHO05D000001 1.3e-06 58.2 89 33.7
CSS0047136 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.3e-06 58.2 91 35.2
CSS0032534 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.2e-06 57.4 83 38.6
ECA247G1586 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.9e-06 57.0 166 30.7
Rhsim05G0182900 Rhododendron simsii HOM05D000002 ORTHO05D000001 2.9e-06 57.0 99 35.4
Ah.13g077590 Amaranthus hybridus HOM05D000002 ORTHO05D000001 3.7e-06 56.6 81 40.7
arahy.Tifrunner.gnm1.ann1.L2V2PJ Arachis hypogaea HOM05D000002 ORTHO05D000001 3.7e-06 56.6 92 39.1
CSS0025925 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.7e-06 56.6 108 32.4
CSS0041353 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.7e-06 56.6 108 32.4
Cc06_g20010 Coffea canephora HOM05D000002 ORTHO05D000001 3.7e-06 56.6 110 34.5
Sopen08g014470 Solanum pennellii HOM05D002431 ORTHO05D000001 3.7e-06 56.6 86 37.2
CAN.G1741.2 Capsicum annuum HOM05D000002 ORTHO05D000001 4.9e-06 56.2 92 38.0
ClCG01G016080 Citrullus lanatus HOM05D000002 ORTHO05D000001 4.9e-06 56.2 111 33.3
ECA234G1536 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.9e-06 56.2 142 30.3
TPR.G27549 Trifolium pratense HOM05D000002 ORTHO05D000001 4.9e-06 56.2 80 40.0
TAR610G0003 Trochodendron aralioides HOM05D000002 ORTHO05D000001 4.9e-06 56.2 81 38.3
ECA233G1874 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.4e-06 55.8 142 30.3
ECA246G2496 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.4e-06 55.8 142 30.3
Hma1.2p1_0939F.1_g239370 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 6.4e-06 55.8 106 38.7


User provided reference genes

Program Settings