Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold243G44307 Striga asiatica HOM05D060893 ORTHO05D008752 5.9e-77 290.8 148 100.0
SGA_v2.0_scaffold34G13599 Striga asiatica HOM05D060893 ORTHO05D399547 2.6e-48 195.7 164 68.9
SGA_v2.0_scaffold80G25908 Striga asiatica HOM05D006992 ORTHO05D008752 8.9e-17 90.9 94 60.6
SalBow3G4063 Salvia bowleyana HOM05D006992 ORTHO05D008752 2.5e-11 72.8 91 50.5
Migut.N01946 Erythranthe guttata HOM05D006992 ORTHO05D008752 2.4e-09 66.2 88 51.1
Hund06999 Selenicereus undatus HOM05D006992 ORTHO05D008752 4.0e-09 65.5 119 42.9
Eucgr.B01740 Eucalyptus grandis HOM05D006992 ORTHO05D008752 5.2e-09 65.1 123 39.0
Oeu012474.1 Olea europaea HOM05D006992 ORTHO05D008752 5.2e-09 65.1 87 48.3
MD12G1234200 Malus domestica HOM05D006992 ORTHO05D008752 6.8e-09 64.7 92 48.9
CAN.G424.13 Capsicum annuum HOM05D006992 ORTHO05D008752 1.2e-08 63.9 88 46.6
Sc09g0003710 Simmondsia chinensis HOM05D006992 ORTHO05D008752 3.4e-08 62.4 92 47.8
FAN05G0877 Fragaria x ananassa HOM05D000167 ORTHO05D000640 5.8e-08 61.6 113 40.7
Thhalv10021439m.g Eutrema salsugineum HOM05D006992 ORTHO05D008752 9.9e-08 60.8 113 41.6
CARHR079260 Cardamine hirsuta HOM05D006992 ORTHO05D008752 1.7e-07 60.1 90 45.6
FAN05G5181 Fragaria x ananassa HOM05D006992 ORTHO05D008752 1.7e-07 60.1 113 39.8
Actinidia33837 Actinidia chinensis HOM05D006992 ORTHO05D008752 2.2e-07 59.7 142 37.3
AUR62000954 Chenopodium quinoa HOM05D006992 ORTHO05D008752 2.2e-07 59.7 86 46.5
FAN09G1577 Fragaria x ananassa HOM05D000167 ORTHO05D000640 2.2e-07 59.7 113 40.7
THA.LOC104818652 Tarenaya hassleriana HOM05D006992 ORTHO05D008752 2.2e-07 59.7 113 41.6
Carub.0003s0417 Capsella rubella HOM05D006992 ORTHO05D008752 2.9e-07 59.3 95 43.2
Atru.chr2.657 Acer truncatum HOM05D006992 ORTHO05D008752 4.9e-07 58.5 143 37.1
AUR62005014 Chenopodium quinoa HOM05D006992 ORTHO05D008752 4.9e-07 58.5 111 40.5
Prupe.6G337300 Prunus persica HOM05D006992 ORTHO05D008752 4.9e-07 58.5 90 46.7
Solyc02g079130.3 Solanum lycopersicum HOM05D006992 ORTHO05D008752 4.9e-07 58.5 103 39.8
Sopen02g023930 Solanum pennellii HOM05D006992 ORTHO05D008752 4.9e-07 58.5 103 39.8
DCAR_022834 Daucus carota HOM05D006992 ORTHO05D008752 6.4e-07 58.2 105 43.8
FvH4_6g03930 Fragaria vesca HOM05D006992 ORTHO05D008752 6.4e-07 58.2 113 39.8
BraA03t12570Z Brassica rapa HOM05D006992 ORTHO05D008752 8.4e-07 57.8 128 38.3
Nitab4.5_0004284g0080 Nicotiana tabacum HOM05D006992 ORTHO05D008752 8.4e-07 57.8 92 45.7
vmacro19674 Vaccinium macrocarpon HOM05D006992 ORTHO05D008752 8.4e-07 57.8 125 40.8
EL10Ac4g09207 Beta vulgaris HOM05D006992 ORTHO05D008752 1.1e-06 57.4 93 44.1
FAN02G1922 Fragaria x ananassa HOM05D000167 ORTHO05D000640 1.4e-06 57.0 113 39.8
RcHm_v2.0_Chr3g0452481 Rosa chinensis HOM05D006992 ORTHO05D008752 1.4e-06 57.0 88 46.6
BcaB04g19286 Brassica carinata HOM05D006992 ORTHO05D008752 1.9e-06 56.6 125 36.8
Migut.N01944 Erythranthe guttata HOM05D006992 ORTHO05D008752 1.9e-06 56.6 82 45.1
Nitab4.5_0001410g0140 Nicotiana tabacum HOM05D006992 ORTHO05D008752 1.9e-06 56.6 92 45.7
PGSC0003DMG400022358 Solanum tuberosum HOM05D006992 ORTHO05D008752 1.9e-06 56.6 91 41.8
CsaV3_1G039620 Cucumis sativus L. HOM05D006992 ORTHO05D008752 2.4e-06 56.2 85 48.2
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 3.2e-06 55.8 84 48.8
QL03p000176 Quercus lobata HOM05D006992 ORTHO05D008752 3.2e-06 55.8 124 36.3
AL3G15290 Arabidopsis lyrata HOM05D006992 ORTHO05D008752 4.2e-06 55.5 87 43.7
A03p33950 Brassica napus HOM05D003164 ORTHO05D003575 4.2e-06 55.5 137 36.5
BolC3t16415H Brassica oleracea HOM05D006992 ORTHO05D008752 4.2e-06 55.5 116 36.2
ClCG03G016340 Citrullus lanatus HOM05D006992 ORTHO05D008752 4.2e-06 55.5 83 45.8
Sp3g03770 Schrenkiella parvula HOM05D006992 ORTHO05D008752 4.2e-06 55.5 121 37.2
AT3G04950 Arabidopsis thaliana HOM05D006992 ORTHO05D008752 5.4e-06 55.1 84 45.2
CDE02G3150 Ceratophyllum demersum HOM05D006992 ORTHO05D008752 5.4e-06 55.1 69 46.4
Cc02_g31290 Coffea canephora HOM05D006992 ORTHO05D008752 5.4e-06 55.1 120 37.5
Rhsim05G0148900 Rhododendron simsii HOM05D006992 ORTHO05D008752 5.4e-06 55.1 125 39.2
MELO3C015384.2 Cucumis melo HOM05D006992 ORTHO05D008752 7.1e-06 54.7 83 45.8
FAN14G0596 Fragaria x ananassa HOM05D006992 ORTHO05D008752 7.1e-06 54.7 113 40.7
PSO210G3204 Papaver somniferum HOM05D006992 ORTHO05D008752 7.1e-06 54.7 119 37.8
PSO832G0773 Papaver somniferum HOM05D006992 ORTHO05D008752 7.1e-06 54.7 119 37.8
Sed0003148 Sechium edule HOM05D006992 ORTHO05D008752 7.1e-06 54.7 93 45.2
BcaC01g04339 Brassica carinata HOM05D006992 ORTHO05D008752 9.2e-06 54.3 116 36.2
C03p41330 Brassica napus HOM05D003164 ORTHO05D003575 9.2e-06 54.3 116 36.2
CSS0031345 Camellia sinensis var. sinensis HOM05D006992 ORTHO05D008752 9.2e-06 54.3 108 41.7
Lj7A478T92 Lonicera japonica HOM05D006992 ORTHO05D008752 9.2e-06 54.3 86 46.5
Thecc.05G291400 Theobroma cacao HOM05D006992 ORTHO05D008752 9.2e-06 54.3 109 42.2


User provided reference genes

Program Settings