Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 1.4e-139 499.6 245 100.0
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 2.1e-87 326.2 180 91.7
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 5.1e-86 321.6 180 90.0
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 5.3e-75 285.0 180 77.8
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 1.9e-72 276.6 180 75.0
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 7.2e-72 274.6 180 75.6
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 6.1e-71 271.6 180 76.7
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 5.2e-70 268.5 180 72.2
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 1.2e-69 267.3 180 72.2
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 1.2e-69 267.3 180 72.2
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 1.3e-68 263.8 196 66.8
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 1.3e-68 263.8 196 66.8
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 1.7e-68 263.5 197 68.5
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 1.7e-68 263.5 196 66.8
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 1.4e-67 260.4 197 67.5
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 5.3e-67 258.5 180 73.3
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 1.6e-66 256.9 197 66.5
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 1.6e-66 256.9 196 66.3
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 1.6e-66 256.9 197 66.0
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 2.0e-66 256.5 180 69.4
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.7e-66 256.1 182 68.1
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 2.7e-66 256.1 196 65.3
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 2.7e-66 256.1 180 69.4
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 4.5e-66 255.4 165 73.3
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 4.5e-66 255.4 196 67.3
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 5.9e-66 255.0 197 66.0
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 7.7e-66 254.6 182 68.1
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 1.3e-65 253.8 180 70.0
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 1.3e-65 253.8 180 71.1
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 1.7e-65 253.4 196 65.3
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 1.7e-65 253.4 197 66.0
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 2.2e-65 253.1 180 71.7
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 5.0e-65 251.9 194 66.0
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 5.0e-65 251.9 180 69.4
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 1.9e-64 250.0 196 65.3
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 2.5e-64 249.6 196 64.3
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 4.2e-64 248.8 180 70.0
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 5.5e-64 248.4 197 62.9
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 5.5e-64 248.4 196 63.3
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 5.5e-64 248.4 196 63.8
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 9.4e-64 247.7 186 66.7
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 9.4e-64 247.7 181 67.4
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 1.2e-63 247.3 197 62.9
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 1.6e-63 246.9 197 62.4
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 2.1e-63 246.5 197 62.4
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 2.1e-63 246.5 231 57.1
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 2.7e-63 246.1 180 67.8
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 2.7e-63 246.1 196 64.3
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 2.7e-63 246.1 180 68.9
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 6.1e-63 245.0 197 61.9
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 6.1e-63 245.0 197 62.9
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 8.0e-63 244.6 197 61.9
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 8.0e-63 244.6 197 62.9
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 1.0e-62 244.2 196 62.8
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 1.0e-62 244.2 196 62.2
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 1.8e-62 243.4 196 62.8
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 1.8e-62 243.4 180 65.6
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 1.8e-62 243.4 196 62.2
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 2.3e-62 243.0 197 61.9
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 2.3e-62 243.0 197 62.4
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 2.3e-62 243.0 180 66.1
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 4.0e-62 242.3 197 62.4
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 5.2e-62 241.9 180 66.7
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 5.2e-62 241.9 196 61.7
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 6.8e-62 241.5 196 61.7
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 1.2e-61 240.7 196 63.8
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 1.2e-61 240.7 196 63.8
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 1.2e-61 240.7 197 61.4
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 1.5e-61 240.4 197 61.9
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 2.0e-61 240.0 180 66.7
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 2.0e-61 240.0 196 62.8
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 2.6e-61 239.6 180 67.8
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 3.4e-61 239.2 180 67.2
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 4.4e-61 238.8 196 61.2
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 5.7e-61 238.4 180 66.7
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 5.7e-61 238.4 180 67.2
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 7.5e-61 238.0 180 66.1
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 7.5e-61 238.0 180 66.1
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 7.5e-61 238.0 180 66.1
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 7.5e-61 238.0 196 63.3
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 9.8e-61 237.7 180 66.7
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 9.8e-61 237.7 180 66.1
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 9.8e-61 237.7 180 66.1
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 9.8e-61 237.7 180 66.1
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 9.8e-61 237.7 180 67.2
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 1.3e-60 237.3 172 70.3
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 1.3e-60 237.3 180 66.1
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 1.7e-60 236.9 180 66.1
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 2.2e-60 236.5 197 60.4
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 2.2e-60 236.5 196 61.2
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 3.7e-60 235.7 180 65.6
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 4.8e-60 235.3 196 59.7
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 4.8e-60 235.3 197 59.4
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 4.8e-60 235.3 203 59.1
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 6.3e-60 235.0 180 63.9
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 6.3e-60 235.0 180 63.3
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 6.3e-60 235.0 198 60.6
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 8.3e-60 234.6 196 61.7
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 1.1e-59 234.2 197 59.9
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 1.1e-59 234.2 197 59.4
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 1.4e-59 233.8 181 65.7
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 1.4e-59 233.8 181 65.7
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 1.4e-59 233.8 198 61.6
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 1.4e-59 233.8 196 60.2
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 1.8e-59 233.4 196 58.7
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 2.4e-59 233.0 196 59.2
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 2.4e-59 233.0 196 59.2
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 3.1e-59 232.6 197 59.9
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 4.1e-59 232.3 198 61.1
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 4.1e-59 232.3 196 58.7
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 5.4e-59 231.9 197 59.4
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 5.4e-59 231.9 181 65.2
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 7.0e-59 231.5 221 54.3
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 9.1e-59 231.1 197 58.4
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 1.2e-58 230.7 197 57.9
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.6e-58 230.3 233 53.2
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 2.0e-58 229.9 195 60.0
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 2.7e-58 229.6 197 59.4
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 2.7e-58 229.6 196 58.2
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 2.7e-58 229.6 197 58.4
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 3.5e-58 229.2 196 60.7
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 4.5e-58 228.8 217 53.9
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 4.5e-58 228.8 196 58.7
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 2.3e-57 226.5 196 59.2
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 6.5e-57 224.9 196 57.7
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 1.9e-56 223.4 180 60.6
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 7.2e-56 221.5 197 58.9
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 2.1e-55 219.9 165 66.7
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 8.0e-55 218.0 170 62.9
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 5.2e-54 215.3 208 55.3
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 9.8e-53 211.1 180 60.0
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 4.9e-52 208.8 133 70.7
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 5.4e-51 205.3 196 57.1
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 9.2e-51 204.5 181 61.9
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 9.2e-51 204.5 180 57.2
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 1.6e-50 203.8 180 55.6
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 2.3e-49 199.9 174 58.6
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 3.8e-49 199.1 185 56.8
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 2.5e-48 196.4 158 63.9
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 9.5e-48 194.5 169 58.6
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 6.1e-47 191.8 162 64.2
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 1.4e-46 190.7 169 59.8
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.5e-45 187.2 143 63.6
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 4.4e-45 185.7 158 60.1
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 1.7e-44 183.7 180 57.8
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 1.7e-41 173.7 190 52.1
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 2.3e-41 173.3 199 48.2
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 3.0e-41 172.9 196 50.0
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 1.2e-39 167.5 181 51.9
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 1.8e-38 163.7 181 52.5
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 1.2e-37 161.0 183 51.4
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 2.9e-36 156.4 128 59.4
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 5.4e-35 152.1 180 47.2
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 1.2e-34 151.0 182 48.4
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 3.0e-33 146.4 180 50.0
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 3.6e-31 139.4 131 60.3
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 4.0e-30 136.0 133 55.6
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 9.9e-29 131.3 103 60.2
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 4.1e-27 125.9 158 46.2
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 4.6e-26 122.5 110 53.6
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 7.3e-24 115.2 203 37.9
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 7.3e-24 115.2 137 44.5
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 3.6e-23 112.8 129 48.8
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 4.7e-23 112.5 91 64.8
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 4.0e-22 109.4 87 64.4
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 6.0e-18 95.5 63 68.3
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 5.1e-17 92.4 132 37.1
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 7.1e-11 72.0 89 52.8
THA.LOC104807810 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 1.2e-10 71.2 44 72.7
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 6.0e-10 68.9 179 27.9
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 1.3e-09 67.8 49 63.3
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 8.7e-09 65.1 49 65.3
MBI11_g33763_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 2.4e-06 57.0 69 44.9


User provided reference genes

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