Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold23G10178 Striga asiatica HOM05D004220 ORTHO05D006217 4.9e-216 754.2 387 100.0
SGA_v2.0_scaffold143G35733 Striga asiatica HOM05D004220 ORTHO05D006217 4.8e-195 684.5 387 91.2
Migut.E00492 Erythranthe guttata HOM05D004220 ORTHO05D006217 4.9e-184 647.9 388 86.3
SalBow2G3345 Salvia bowleyana HOM05D004220 ORTHO05D006217 7.4e-180 634.0 396 83.3
MSTRG.13631 Avicennia marina HOM05D004220 ORTHO05D006217 6.3e-179 630.9 388 84.3
Oeu044002.1 Olea europaea HOM05D004220 ORTHO05D006217 3.8e-176 621.7 391 81.6
COL.COLO4_27642 Corchorus olitorius HOM05D004220 ORTHO05D006217 4.8e-171 604.7 385 80.8
Eucgr.B03437 Eucalyptus grandis HOM05D004220 ORTHO05D006217 1.1e-170 603.6 385 81.0
Manes.15G135500 Manihot esculenta HOM05D004220 ORTHO05D006217 2.4e-170 602.4 385 79.7
Potri.008G135700 Populus trichocarpa HOM05D004220 ORTHO05D006217 3.1e-170 602.1 347 86.2
Actinidia12400 Actinidia chinensis HOM05D004220 ORTHO05D006217 4.1e-170 601.7 352 86.9
Thecc.02G309700 Theobroma cacao HOM05D004220 ORTHO05D006217 9.1e-170 600.5 385 80.3
Dinv26357 Davidia involucrata HOM05D004220 ORTHO05D006217 2.0e-169 599.4 387 79.3
Atru.chr11.900 Acer truncatum HOM05D004220 ORTHO05D006217 2.6e-169 599.0 381 80.1
Sabra08G0103700 Salix brachista HOM05D004220 ORTHO05D006217 3.4e-169 598.6 373 80.7
Gohir.D13G025700 Gossypium hirsutum HOM05D004220 ORTHO05D006217 1.0e-168 597.0 385 80.0
Gorai.013G028900 Gossypium raimondii HOM05D004220 ORTHO05D006217 1.0e-168 597.0 385 80.0
Potri.010G105300 Populus trichocarpa HOM05D004220 ORTHO05D006217 1.7e-168 596.3 347 85.3
Dinv18907 Davidia involucrata HOM05D004220 ORTHO05D006217 5.0e-168 594.7 387 78.8
Duzib251G0717 Durio zibethinus HOM05D004220 ORTHO05D006217 5.0e-168 594.7 347 86.5
Lj6A736T83 Lonicera japonica HOM05D004220 ORTHO05D006217 6.5e-168 594.3 387 80.4
TWI74G0333 Tripterygium wilfordii HOM05D004220 ORTHO05D006217 6.5e-168 594.3 351 84.6
Duzib248G1338 Durio zibethinus HOM05D004220 ORTHO05D006217 1.1e-167 593.6 385 79.0
Glyma.08G047800 Glycine max HOM05D004220 ORTHO05D006217 1.1e-167 593.6 389 78.4
Gohir.A13G026900 Gossypium hirsutum HOM05D004220 ORTHO05D006217 1.4e-167 593.2 385 80.0
Nn4g24652 Nelumbo nucifera HOM05D004220 ORTHO05D006217 1.4e-167 593.2 387 77.3
Hund08335 Selenicereus undatus HOM05D004220 ORTHO05D006217 1.9e-167 592.8 353 84.7
Solyc01g005250.4 Solanum lycopersicum HOM05D004220 ORTHO05D006217 5.5e-167 591.3 387 79.8
Sopen01g001280 Solanum pennellii HOM05D004220 ORTHO05D006217 5.5e-167 591.3 387 79.8
Ciclev10015633m.g Citrus clementina HOM05D004220 ORTHO05D006217 1.2e-166 590.1 382 79.1
Haze_10865 Corylus avellana HOM05D004220 ORTHO05D006217 1.2e-166 590.1 348 85.6
unitig_27.g25162 Utricularia gibba HOM05D004220 ORTHO05D006217 1.2e-166 590.1 372 82.3
arahy.Tifrunner.gnm1.ann1.GF1W8W Arachis hypogaea HOM05D004220 ORTHO05D006217 1.6e-166 589.7 351 84.6
Gorai.008G170900 Gossypium raimondii HOM05D004220 ORTHO05D006217 1.6e-166 589.7 385 79.2
Potri.010G105000 Populus trichocarpa HOM05D004220 ORTHO05D006217 1.6e-166 589.7 345 85.2
PGSC0003DMG400022796 Solanum tuberosum HOM05D004220 ORTHO05D006217 1.6e-166 589.7 389 78.7
LjContig00081g0015221 Lotus japonicus HOM05D004220 ORTHO05D006217 2.1e-166 589.3 347 84.4
Cpa.g.sc2.184 Carica papaya HOM05D004220 ORTHO05D006217 2.7e-166 589.0 388 78.4
Gohir.A12G154900 Gossypium hirsutum HOM05D004220 ORTHO05D006217 2.7e-166 589.0 385 79.0
Lsat_1_v5_gn_8_35340 Lactuca sativa HOM05D004220 ORTHO05D006217 2.7e-166 589.0 381 80.3
Lj4g0025833 Lotus japonicus HOM05D004220 ORTHO05D006217 3.6e-166 588.6 347 84.4
TAR371G0933 Trochodendron aralioides HOM05D004220 ORTHO05D006217 4.7e-166 588.2 390 77.2
CiPaw.06G053400 Carya illinoinensis HOM05D004220 ORTHO05D006217 6.1e-166 587.8 348 85.3
Cfa015032 Carpinus fangiana HOM05D004220 ORTHO05D006217 7.9e-166 587.4 348 85.1
Glyma.05G240700 Glycine max HOM05D004220 ORTHO05D006217 7.9e-166 587.4 386 78.2
VMungo0251G0500 Vigna mungo HOM05D004220 ORTHO05D006217 7.9e-166 587.4 387 78.3
Ca_17252_v3 Cicer arietinum L. HOM05D004220 ORTHO05D006217 1.0e-165 587.0 376 81.1
Psat4g004640 Pisum sativum HOM05D004220 ORTHO05D006217 1.0e-165 587.0 347 84.1
PGR102G3065 Punica granatum HOM05D004220 ORTHO05D006217 1.8e-165 586.3 368 81.5
MBI05_g37451_MAGBIO Magnolia biondii HOM05D004220 ORTHO05D006217 2.3e-165 585.9 371 80.6
Lalb_Chr05g0222081 Lupinus albus HOM05D004220 ORTHO05D006217 6.7e-165 584.3 385 77.1
Medtr8g105860 Medicago truncatula HOM05D004220 ORTHO05D006217 8.8e-165 583.9 376 79.8
Phvul.002G323900 Phaseolus vulgaris HOM05D004220 ORTHO05D006217 8.8e-165 583.9 385 77.4
ECA233G3753 Erigeron canadensis HOM05D004220 ORTHO05D006217 1.5e-164 583.2 387 78.0
QL03p036195 Quercus lobata HOM05D004220 ORTHO05D006217 1.5e-164 583.2 350 83.7
Lalb_Chr09g0330781 Lupinus albus HOM05D004220 ORTHO05D006217 2.0e-164 582.8 385 77.4
Nitab4.5_0000640g0100 Nicotiana tabacum HOM05D004220 ORTHO05D006217 2.0e-164 582.8 345 85.5
Lalb_Chr16g0387441 Lupinus albus HOM05D004220 ORTHO05D006217 5.7e-164 581.3 385 77.7
FvH4_4g33450 Fragaria vesca HOM05D004220 ORTHO05D006217 7.4e-164 580.9 357 82.1
BcaB02g06550 Brassica carinata HOM05D004220 ORTHO05D006217 9.7e-164 580.5 373 79.1
FAN07G0058 Fragaria x ananassa HOM05D004220 ORTHO05D006217 9.7e-164 580.5 353 82.4
FAN07G1238 Fragaria x ananassa HOM05D004220 ORTHO05D006217 9.7e-164 580.5 353 82.4
FAN17G0395 Fragaria x ananassa HOM05D004220 ORTHO05D006217 9.7e-164 580.5 353 82.4
Prupe.1G334400 Prunus persica HOM05D004220 ORTHO05D006217 9.7e-164 580.5 385 76.6
AT1G14810 Arabidopsis thaliana HOM05D004220 ORTHO05D006217 1.3e-163 580.1 362 80.9
AL1G26830 Arabidopsis lyrata HOM05D004220 ORTHO05D006217 1.7e-163 579.7 362 81.2
AUR62017612 Chenopodium quinoa HOM05D004220 ORTHO05D006217 2.2e-163 579.3 345 85.2
FAN12G0660 Fragaria x ananassa HOM05D004220 ORTHO05D006217 2.2e-163 579.3 362 80.9
THA.LOC104805088 Tarenaya hassleriana HOM05D004220 ORTHO05D006217 2.2e-163 579.3 362 80.9
AUR62015160 Chenopodium quinoa HOM05D004220 ORTHO05D006217 2.8e-163 578.9 345 85.5
ClCG07G005480 Citrullus lanatus HOM05D004220 ORTHO05D006217 4.8e-163 578.2 372 80.4
RcHm_v2.0_Chr4g0442761 Rosa chinensis HOM05D004220 ORTHO05D006217 6.3e-163 577.8 351 82.9
SEGI_30189 Sequoiadendron giganteum HOM05D004220 ORTHO05D006217 6.3e-163 577.8 389 77.4
Carub.0001s1460 Capsella rubella HOM05D004220 ORTHO05D006217 8.2e-163 577.4 362 80.4
BraA06t24264Z Brassica rapa HOM05D004220 ORTHO05D006217 1.1e-162 577.0 362 80.4
CDE07G1395 Ceratophyllum demersum HOM05D004220 ORTHO05D006217 1.1e-162 577.0 347 82.7
ATR0763G027 Amborella trichopoda HOM05D004220 ORTHO05D006217 1.4e-162 576.6 347 84.4
A06p10860 Brassica napus HOM05D004220 ORTHO05D006217 1.4e-162 576.6 362 80.4
DCAR_022139 Daucus carota HOM05D004220 ORTHO05D006217 1.4e-162 576.6 349 84.2
PSO302G0185 Papaver somniferum HOM05D004220 ORTHO05D006217 1.8e-162 576.2 388 77.8
Aqoxy6G01748 Aquilegia oxysepala HOM05D004220 ORTHO05D006217 2.4e-162 575.9 362 79.6
DCAR_002675 Daucus carota HOM05D004220 ORTHO05D006217 2.4e-162 575.9 349 84.0
Thhalv10007952m.g Eutrema salsugineum HOM05D004220 ORTHO05D006217 4.1e-162 575.1 362 80.1
FAN22G0209 Fragaria x ananassa HOM05D004220 ORTHO05D006217 4.1e-162 575.1 357 81.2
Sc17g0004200 Simmondsia chinensis HOM05D004220 ORTHO05D006217 4.1e-162 575.1 354 81.4
MD13G1019500 Malus domestica HOM05D004220 ORTHO05D006217 5.3e-162 574.7 385 76.9
HanXRQChr12g0364941 Helianthus annuus HOM05D004220 ORTHO05D006217 6.9e-162 574.3 347 84.7
CANSAT78G0088 Cannabis sativa HOM05D004220 ORTHO05D006217 1.2e-161 573.5 384 76.8
PSO541G1847 Papaver somniferum HOM05D004220 ORTHO05D006217 1.2e-161 573.5 388 77.3
Rhsim09G0088900 Rhododendron simsii HOM05D004220 ORTHO05D006217 1.2e-161 573.5 380 79.2
Sp1g13250 Schrenkiella parvula HOM05D004220 ORTHO05D006217 1.2e-161 573.5 386 75.6
Sed0023691 Sechium edule HOM05D004220 ORTHO05D006217 1.5e-161 573.2 365 80.8
CARHR015340 Cardamine hirsuta HOM05D004220 ORTHO05D006217 2.0e-161 572.8 362 79.8
BcaB03g13081 Brassica carinata HOM05D004220 ORTHO05D006217 2.6e-161 572.4 362 80.1
A08p31810 Brassica napus HOM05D004220 ORTHO05D006217 2.6e-161 572.4 367 79.0
MELO3C010427.2 Cucumis melo HOM05D004220 ORTHO05D006217 2.6e-161 572.4 372 79.3
Sed0000427 Sechium edule HOM05D004220 ORTHO05D006217 2.6e-161 572.4 365 81.4
unitig_29.g31883 Utricularia gibba HOM05D004220 ORTHO05D006217 4.5e-161 571.6 372 80.1
CAN.G282.120 Capsicum annuum HOM05D004220 ORTHO05D006217 5.9e-161 571.2 345 82.9
BraA08t35103Z Brassica rapa HOM05D004220 ORTHO05D006217 7.7e-161 570.9 367 78.7
BcaC07g38762 Brassica carinata HOM05D004220 ORTHO05D006217 1.0e-160 570.5 362 79.6
C08p16920 Brassica napus HOM05D004220 ORTHO05D006217 1.0e-160 570.5 362 79.6
BolC8t49319H Brassica oleracea HOM05D004220 ORTHO05D006217 1.0e-160 570.5 362 79.6
MD16G1017700 Malus domestica HOM05D004220 ORTHO05D006217 1.0e-160 570.5 385 76.6
C05p12790 Brassica napus HOM05D004220 ORTHO05D006217 1.3e-160 570.1 362 79.3
THA.LOC104824123 Tarenaya hassleriana HOM05D004220 ORTHO05D006217 2.2e-160 569.3 367 79.0
CsaV3_5G014440 Cucumis sativus L. HOM05D004220 ORTHO05D006217 3.8e-160 568.5 372 79.3
BolC5t30019H Brassica oleracea HOM05D004220 ORTHO05D006217 5.0e-160 568.2 362 79.0
BcaC05g25401 Brassica carinata HOM05D004220 ORTHO05D006217 6.5e-160 567.8 362 79.0
EL10Ac9g22864 Beta vulgaris HOM05D004220 ORTHO05D006217 4.2e-159 565.1 396 75.3
Aa31LG1G290 Aethionema arabicum HOM05D004220 ORTHO05D006217 7.2e-159 564.3 386 75.6
Pp3c5_10760 Physcomitrium patens HOM05D004220 ORTHO05D006217 6.1e-158 561.2 353 79.6
Zm00001eb214360 Zea mays HOM05D004220 ORTHO05D006217 3.9e-157 558.5 357 79.0
Gohir.D12G158100 Gossypium hirsutum HOM05D004220 ORTHO05D006217 8.8e-157 557.4 407 73.2
AagrBONN_evm.TU.Sc2ySwM_368.1674 Anthoceros agrestis HOM05D004220 ORTHO05D006217 1.5e-156 556.6 357 79.6
TPR.G19271 Trifolium pratense HOM05D004220 ORTHO05D006217 5.3e-154 548.1 322 85.7
Mapoly0086s0044 Marchantia polymorpha HOM05D004220 ORTHO05D006217 2.2e-152 542.7 357 76.2
Os03g0760700 Oryza sativa ssp. japonica HOM05D004220 ORTHO05D006217 5.0e-152 541.6 359 76.6
SMO119G0035 Selaginella moellendorffii HOM05D004220 ORTHO05D006217 2.1e-150 536.2 345 78.8
HanXRQChr06g0171081 Helianthus annuus HOM05D004220 ORTHO05D006217 6.7e-149 531.2 356 78.7
Peaxi162Scf00275g00215 Petunia axillaris HOM05D004220 ORTHO05D006217 2.8e-147 525.8 368 75.0
Ah.05g168430 Amaranthus hybridus HOM05D004220 ORTHO05D006217 3.1e-146 522.3 324 82.7
CBR_g30041 Chara braunii HOM05D004220 ORTHO05D006217 4.1e-146 521.9 335 77.6
HPP92_001024 Vanilla planifolia HOM05D004220 ORTHO05D006217 2.7e-142 509.2 322 80.7
Nitab4.5_0000198g0090 Nicotiana tabacum HOM05D004220 ORTHO05D006217 4.8e-139 498.4 294 84.7
TAR622G1230 Trochodendron aralioides HOM05D004220 ORTHO05D006217 2.1e-134 483.0 294 81.3
Cre09.g389689 Chlamydomonas reinhardtii HOM05D004220 ORTHO05D006217 1.5e-132 476.9 356 68.8
MCO01G646 Micromonas commoda HOM05D004220 ORTHO05D006217 2.4e-130 469.5 348 67.2
Actinidia36618 Actinidia chinensis HOM05D004220 ORTHO05D006217 7.0e-122 441.4 313 75.1
PRCOL_00000291 Prasinoderma coloniale HOM05D004220 ORTHO05D006217 2.3e-117 426.4 306 70.3
GSVIVG01011646001 Vitis vinifera HOM05D004220 ORTHO05D006217 7.5e-108 394.8 225 89.3
Nn3g18412 Nelumbo nucifera HOM05D004220 ORTHO05D006217 3.9e-88 329.3 186 88.7
Cc11_g06980 Coffea canephora HOM05D004220 ORTHO05D006217 8.7e-88 328.2 188 87.2
TAR629G1713 Trochodendron aralioides HOM05D004220 ORTHO05D006217 2.1e-65 253.8 200 64.5
TAR629G0578 Trochodendron aralioides HOM05D004220 ORTHO05D006217 1.8e-64 250.8 200 64.0
MD13G1041100 Malus domestica HOM05D004220 ORTHO05D006217 3.3e-55 219.9 240 54.6
BolC8t52095H Brassica oleracea HOM05D004220 ORTHO05D001325 5.0e-51 206.1 118 83.9
C08p45410 Brassica napus HOM05D004220 ORTHO05D001325 1.9e-50 204.1 118 83.1
Aqoxy6G01744 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 4.2e-50 203.0 138 71.7
TAR629G0842 Trochodendron aralioides HOM05D004220 ORTHO05D006217 5.5e-50 202.6 170 65.9
TAR629G3246 Trochodendron aralioides HOM05D004220 ORTHO05D006217 5.5e-50 202.6 170 65.9
BcaC05g25398 Brassica carinata HOM05D000822 ORTHO05D002021 7.2e-50 202.2 177 62.1
Aqoxy2G01924 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 4.1e-45 186.4 124 71.8
Aqoxy7G02277 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 7.0e-45 185.7 121 72.7
CsaV3_5G014420 Cucumis sativus L. HOM05D004220 ORTHO05D006217 4.4e-39 166.4 97 83.5
RcHm_v2.0_Chr2g0166251 Rosa chinensis HOM05D004220 ORTHO05D006217 5.7e-39 166.0 102 83.3
MSTRG.2121 Avicennia marina HOM05D004220 ORTHO05D017372 1.2e-33 148.3 124 66.9
Aqoxy3G02388 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 3.0e-32 143.7 155 51.0
BcaC07g41538 Brassica carinata HOM05D001471 ORTHO05D001325 4.0e-32 143.3 119 68.1
CDE12G0826 Ceratophyllum demersum HOM05D004220 ORTHO05D017372 3.4e-31 140.2 127 55.9
AL7G45370 Arabidopsis lyrata HOM05D004220 ORTHO05D006217 1.3e-30 138.3 79 83.5
QL03p036261 Quercus lobata HOM05D004220 ORTHO05D006217 1.3e-30 138.3 78 85.9
Actinidia36617 Actinidia chinensis HOM05D004220 ORTHO05D006217 3.7e-30 136.7 77 84.4
Aqoxy5G02471 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 4.1e-29 133.3 100 64.0
HanXRQChr08g0220351 Helianthus annuus HOM05D004220 ORTHO05D006217 2.7e-28 130.6 88 75.0
Aqoxy5G02658 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 4.5e-28 129.8 98 63.3
Aqoxy5G02966 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 4.5e-28 129.8 99 62.6
BraA09t39195Z Brassica rapa HOM05D004220 ORTHO05D027881 2.9e-27 127.1 71 87.3
C05p12760 Brassica napus HOM05D004220 ORTHO05D027881 8.5e-27 125.6 67 88.1
A09p36790 Brassica napus HOM05D004220 ORTHO05D027881 7.2e-26 122.5 72 83.3
BraSC56t46400Z Brassica rapa HOM05D004220 ORTHO05D027881 4.0e-24 116.7 72 81.9
Actinidia26742 Actinidia chinensis HOM05D004220 ORTHO05D006217 1.0e-16 92.0 52 82.7
TAR633G1096 Trochodendron aralioides HOM05D004220 ORTHO05D000192 1.0e-16 92.0 59 74.6
HanXRQChr17g0555841 Helianthus annuus HOM05D004220 ORTHO05D006217 9.8e-15 85.5 58 72.4
BcaB08g34410 Brassica carinata HOM05D001471 ORTHO05D001325 8.3e-14 82.4 81 56.8
Cfa024397 Carpinus fangiana HOM05D004220 ORTHO05D043712 3.2e-13 80.5 375 26.4
C09p39400 Brassica napus HOM05D004220 ORTHO05D039209 5.2e-08 63.2 40 82.5


User provided reference genes

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