Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold239G44034 Striga asiatica HOM05D001501 ORTHO05D001329 1.7e-64 249.2 126 100.0
SGA_v2.0_scaffold21G09335 Striga asiatica HOM05D001501 ORTHO05D001329 1.8e-50 202.6 129 82.9
SGA_v2.0_scaffold130G34346 Striga asiatica HOM05D010484 ORTHO05D001329 6.0e-38 161.0 132 70.5
MSTRG.12891 Avicennia marina HOM05D010484 ORTHO05D001329 4.8e-19 98.2 135 48.1
SGA_v2.0_scaffold70G23695 Striga asiatica HOM05D010484 ORTHO05D010242 8.1e-19 97.4 130 48.5
PGR031G3944 Punica granatum HOM05D001501 ORTHO05D001329 2.9e-16 89.0 113 45.1
Nn1g04269 Nelumbo nucifera HOM05D001501 ORTHO05D001329 1.1e-15 87.0 133 41.4
Actinidia35237 Actinidia chinensis HOM05D001501 ORTHO05D001329 9.3e-15 84.0 129 42.6
Prupe.4G173500 Prunus persica HOM05D001501 ORTHO05D001329 1.0e-13 80.5 70 57.1
CSS0041099 Camellia sinensis var. sinensis HOM05D001501 ORTHO05D001329 3.0e-13 79.0 123 47.2
MD11G1256500 Malus domestica HOM05D001501 ORTHO05D001329 3.0e-13 79.0 69 59.4
Duzib213G0990 Durio zibethinus HOM05D001501 ORTHO05D001329 8.7e-13 77.4 130 40.8
Dinv20212 Davidia involucrata HOM05D001501 ORTHO05D001329 1.1e-12 77.0 132 36.4
Migut.H01963 Erythranthe guttata HOM05D010484 ORTHO05D010242 1.1e-12 77.0 112 45.5
Oeu025352.2 Olea europaea HOM05D001501 ORTHO05D001329 1.9e-12 76.3 133 37.6
MD03G1235500 Malus domestica HOM05D001501 ORTHO05D001329 2.5e-12 75.9 69 55.1
CsaV3_3G019560 Cucumis sativus L. HOM05D001501 ORTHO05D001329 7.4e-12 74.3 68 54.4
Sed0026243 Sechium edule HOM05D001501 ORTHO05D001329 7.4e-12 74.3 68 54.4
EL10Ac4g08261 Beta vulgaris HOM05D001501 ORTHO05D001329 9.6e-12 73.9 99 43.4
AUR62019490 Chenopodium quinoa HOM05D001501 ORTHO05D001329 9.6e-12 73.9 102 47.1
AUR62036146 Chenopodium quinoa HOM05D001501 ORTHO05D001329 9.6e-12 73.9 102 48.0
Phvul.005G069500 Phaseolus vulgaris HOM05D001501 ORTHO05D001329 9.6e-12 73.9 71 54.9
Thecc.07G099300 Theobroma cacao HOM05D001501 ORTHO05D001329 9.6e-12 73.9 128 39.1
VMungo1080G0146 Vigna mungo HOM05D001501 ORTHO05D001329 9.6e-12 73.9 71 54.9
FAN11G0392 Fragaria x ananassa HOM05D001501 ORTHO05D001329 1.3e-11 73.6 68 54.4
FAN25G3082 Fragaria x ananassa HOM05D001501 ORTHO05D001329 1.3e-11 73.6 68 54.4
Glyma.12G227100 Glycine max HOM05D001501 ORTHO05D001329 1.3e-11 73.6 71 54.9
Glyma.13G273200 Glycine max HOM05D001501 ORTHO05D001329 1.3e-11 73.6 71 54.9
FvH4_3g19190 Fragaria vesca HOM05D001501 ORTHO05D001329 1.6e-11 73.2 68 54.4
FAN21G4066 Fragaria x ananassa HOM05D001501 ORTHO05D001329 2.1e-11 72.8 95 44.2
MBI06_g00806_MAGBIO Magnolia biondii HOM05D001501 ORTHO05D001329 2.1e-11 72.8 69 50.7
ClCG05G009220 Citrullus lanatus HOM05D001501 ORTHO05D001329 3.6e-11 72.0 68 52.9
Medtr2g078620 Medicago truncatula HOM05D001501 ORTHO05D001329 3.6e-11 72.0 80 52.5
Psat5g241480 Pisum sativum HOM05D001501 ORTHO05D001329 3.6e-11 72.0 80 52.5
TPR.G17529 Trifolium pratense HOM05D001501 ORTHO05D001329 3.6e-11 72.0 80 52.5
FAN16G1511 Fragaria x ananassa HOM05D001501 ORTHO05D001329 4.8e-11 71.6 68 52.9
RcHm_v2.0_Chr5g0032271 Rosa chinensis HOM05D001501 ORTHO05D001329 6.2e-11 71.2 110 40.0
Atru.chr2.2385 Acer truncatum HOM05D008621 ORTHO05D010242 8.1e-11 70.9 71 54.9
TWI38G1368 Tripterygium wilfordii HOM05D001501 ORTHO05D001329 8.1e-11 70.9 105 42.9
TAR626G1090 Trochodendron aralioides HOM05D001501 ORTHO05D001329 8.1e-11 70.9 130 37.7
arahy.Tifrunner.gnm1.ann1.14Q3ET Arachis hypogaea HOM05D001501 ORTHO05D001329 1.4e-10 70.1 115 41.7
Gohir.A01G060500 Gossypium hirsutum HOM05D001501 ORTHO05D001329 1.8e-10 69.7 129 38.8
QL08p023599 Quercus lobata HOM05D001501 ORTHO05D001329 2.4e-10 69.3 70 55.7
arahy.Tifrunner.gnm1.ann1.B8RZEA Arachis hypogaea HOM05D001501 ORTHO05D001329 4.0e-10 68.6 115 40.9
Sc16g0007300 Simmondsia chinensis HOM05D001501 ORTHO05D001329 4.0e-10 68.6 84 44.0
Gohir.D01G047000 Gossypium hirsutum HOM05D001501 ORTHO05D001329 5.3e-10 68.2 129 37.2
Gorai.002G066500 Gossypium raimondii HOM05D001501 ORTHO05D001329 5.3e-10 68.2 129 37.2
MBI07_g01326_MAGBIO Magnolia biondii HOM05D001501 ORTHO05D001329 5.3e-10 68.2 63 54.0
MBI07_g38899_MAGBIO Magnolia biondii HOM05D001501 ORTHO05D001329 5.3e-10 68.2 63 54.0
Cfa020621 Carpinus fangiana HOM05D001501 ORTHO05D001329 6.9e-10 67.8 109 42.2
Haze_09384 Corylus avellana HOM05D001501 ORTHO05D001329 6.9e-10 67.8 109 42.2
Sed0013458 Sechium edule HOM05D001501 ORTHO05D001329 6.9e-10 67.8 73 46.6
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 1.2e-09 67.0 82 48.8
Ciclev10010201m.g Citrus clementina HOM05D008621 ORTHO05D001329 1.2e-09 67.0 69 50.7
Lalb_Chr20g0109461 Lupinus albus HOM05D001501 ORTHO05D001329 1.2e-09 67.0 102 43.1
Lj3g0018355 Lotus japonicus HOM05D001501 ORTHO05D001329 1.5e-09 66.6 96 43.8
MBI06_g36539_MAGBIO Magnolia biondii HOM05D001501 ORTHO05D001329 2.0e-09 66.2 70 50.0
PSO675G3629 Papaver somniferum HOM05D001501 ORTHO05D001329 2.0e-09 66.2 90 38.9
GSVIVG01014264001 Vitis vinifera HOM05D001501 ORTHO05D001329 2.0e-09 66.2 65 52.3
PSO541G6205 Papaver somniferum HOM05D001501 ORTHO05D001329 3.4e-09 65.5 90 38.9
CANSAT35G0828 Cannabis sativa HOM05D001501 ORTHO05D001329 4.5e-09 65.1 123 38.2
CiPaw.11G166600 Carya illinoinensis HOM05D001501 ORTHO05D001329 7.6e-09 64.3 68 52.9
Eucgr.F03292 Eucalyptus grandis HOM05D001501 ORTHO05D001329 9.9e-09 63.9 92 40.2
CDE07G2074 Ceratophyllum demersum HOM05D001501 ORTHO05D001329 1.7e-08 63.2 71 46.5
CDE09G0474 Ceratophyllum demersum HOM05D001501 ORTHO05D001329 1.7e-08 63.2 88 42.0
unitig_37.g12566 Utricularia gibba HOM05D001501 ORTHO05D001329 2.2e-08 62.8 69 50.7
Actinidia19693 Actinidia chinensis HOM05D001501 ORTHO05D001329 6.4e-08 61.2 110 37.3
ATR0759G121 Amborella trichopoda HOM05D001501 ORTHO05D001329 6.4e-08 61.2 75 42.7
CDE10G0503 Ceratophyllum demersum HOM05D001501 ORTHO05D001329 8.4e-08 60.8 67 49.3
QL07p044984 Quercus lobata HOM05D001501 ORTHO05D001329 8.4e-08 60.8 127 33.9
TAR633G1143 Trochodendron aralioides HOM05D001501 ORTHO05D001329 8.4e-08 60.8 89 38.2
Hma1.2p1_0313F.1_g121690 Hydrangea macrophylla HOM05D010484 ORTHO05D001329 1.1e-07 60.5 128 35.2
PSO170G2694 Papaver somniferum HOM05D001501 ORTHO05D001329 1.1e-07 60.5 88 40.9
Sopen02g021180 Solanum pennellii HOM05D001501 ORTHO05D001329 1.1e-07 60.5 76 46.1
PGSC0003DMG400028423 Solanum tuberosum HOM05D001501 ORTHO05D001329 1.4e-07 60.1 76 44.7
ATR0012G043 Amborella trichopoda HOM05D001501 ORTHO05D001329 1.9e-07 59.7 110 38.2
Nn1g04509 Nelumbo nucifera HOM05D001501 ORTHO05D001329 1.9e-07 59.7 71 46.5
PSO170G2394 Papaver somniferum HOM05D001501 ORTHO05D001329 1.9e-07 59.7 85 40.0
Sc20g0005140 Simmondsia chinensis HOM05D001501 ORTHO05D001329 1.9e-07 59.7 96 40.6
Solyc02g072210.1 Solanum lycopersicum HOM05D001501 ORTHO05D001329 1.9e-07 59.7 76 46.1
Psat7g069240 Pisum sativum HOM05D001501 ORTHO05D001329 2.4e-07 59.3 95 38.9
TWI59G0319 Tripterygium wilfordii HOM05D001501 ORTHO05D001329 2.4e-07 59.3 70 47.1
GSVIVG01020749001 Vitis vinifera HOM05D001501 ORTHO05D001329 2.4e-07 59.3 70 44.3
Atru.chr6.2761 Acer truncatum HOM05D001501 ORTHO05D001329 3.2e-07 58.9 71 45.1
Aqoxy1G02757 Aquilegia oxysepala HOM05D001501 ORTHO05D001329 3.2e-07 58.9 108 37.0
CAN.G411.56 Capsicum annuum HOM05D001501 ORTHO05D001329 3.2e-07 58.9 78 42.3
Glyma.13G226900 Glycine max HOM05D001501 ORTHO05D001329 3.2e-07 58.9 86 43.0
MD10G1276400 Malus domestica HOM05D001501 ORTHO05D001329 4.2e-07 58.5 65 46.2
Phvul.005G093900 Phaseolus vulgaris HOM05D001501 ORTHO05D001329 4.2e-07 58.5 91 37.4
TWI23G0154 Tripterygium wilfordii HOM05D001501 ORTHO05D001329 4.2e-07 58.5 75 44.0
TAR627G0009 Trochodendron aralioides HOM05D001501 ORTHO05D001329 4.2e-07 58.5 71 46.5
TAR627G0776 Trochodendron aralioides HOM05D001501 ORTHO05D001329 4.2e-07 58.5 71 46.5
Lsat_1_v5_gn_1_108561 Lactuca sativa HOM05D001501 ORTHO05D001329 5.5e-07 58.2 70 45.7
Glyma.15G085500 Glycine max HOM05D001501 ORTHO05D001329 7.1e-07 57.8 67 44.8
MBI14_g25894_MAGBIO Magnolia biondii HOM05D001501 ORTHO05D001329 7.1e-07 57.8 73 42.5
Nitab4.5_0000437g0150 Nicotiana tabacum HOM05D001501 ORTHO05D001329 7.1e-07 57.8 78 43.6
AL4G41360 Arabidopsis lyrata HOM05D001501 ORTHO05D001329 9.3e-07 57.4 73 49.3
CSS0015375 Camellia sinensis var. sinensis HOM05D001501 ORTHO05D001329 9.3e-07 57.4 121 32.2
CDE10G1333 Ceratophyllum demersum HOM05D000487 ORTHO05D000405 9.3e-07 57.4 68 48.5
DCAR_016893 Daucus carota HOM05D001501 ORTHO05D001329 9.3e-07 57.4 71 42.3
Eucgr.K01150 Eucalyptus grandis HOM05D001501 ORTHO05D001329 9.3e-07 57.4 98 39.8
Lj6g0010216 Lotus japonicus HOM05D001501 ORTHO05D001329 9.3e-07 57.4 67 46.3
QL08p042327 Quercus lobata HOM05D001501 ORTHO05D001329 9.3e-07 57.4 79 43.0
CSS0013234 Camellia sinensis var. sinensis HOM05D001501 ORTHO05D001329 1.2e-06 57.0 121 32.2
CDE02G3304 Ceratophyllum demersum HOM05D001501 ORTHO05D001329 1.2e-06 57.0 66 45.5
CDE03G0498 Ceratophyllum demersum HOM05D001501 ORTHO05D001329 1.2e-06 57.0 102 36.3
Manes.16G042221 Manihot esculenta HOM05D001501 ORTHO05D001329 1.2e-06 57.0 70 47.1
Manes.16G042250 Manihot esculenta HOM05D001501 ORTHO05D001329 1.2e-06 57.0 70 47.1
Sed0013904 Sechium edule HOM05D001501 ORTHO05D001329 1.2e-06 57.0 79 39.2
Sopen10g033670 Solanum pennellii HOM05D001501 ORTHO05D001329 1.2e-06 57.0 97 38.1
PGSC0003DMG400020412 Solanum tuberosum HOM05D001501 ORTHO05D001329 1.2e-06 57.0 72 41.7
TPR.G6741 Trifolium pratense HOM05D001501 ORTHO05D001329 1.2e-06 57.0 105 35.2
Ca_17901_v3 Cicer arietinum L. HOM05D001501 ORTHO05D001329 1.6e-06 56.6 70 42.9
CsaV3_7G005740 Cucumis sativus L. HOM05D001501 ORTHO05D001329 1.6e-06 56.6 69 46.4
DCAR_009776 Daucus carota HOM05D001501 ORTHO05D001329 1.6e-06 56.6 92 37.0
Dinv12365 Davidia involucrata HOM05D001501 ORTHO05D001329 1.6e-06 56.6 69 43.5
Lalb_Chr20g0112821 Lupinus albus HOM05D001501 ORTHO05D001329 1.6e-06 56.6 108 35.2
PGSC0003DMG400010464 Solanum tuberosum HOM05D001501 ORTHO05D001329 1.6e-06 56.6 106 36.8
MELO3C018718.2 Cucumis melo HOM05D001501 ORTHO05D001329 2.1e-06 56.2 69 44.9
Manes.17G058500 Manihot esculenta HOM05D001501 ORTHO05D001329 2.1e-06 56.2 72 44.4
Peaxi162Scf00384g00013 Petunia axillaris HOM05D001501 ORTHO05D001329 2.1e-06 56.2 77 37.7
HPP92_004005 Vanilla planifolia HOM05D001501 ORTHO05D001329 2.1e-06 56.2 80 45.0
Ca_00464_v3 Cicer arietinum L. HOM05D001501 ORTHO05D001329 2.7e-06 55.8 68 44.1
Haze_13430 Corylus avellana HOM05D001501 ORTHO05D001329 2.7e-06 55.8 73 45.2
Manes.16G042240 Manihot esculenta HOM05D001501 ORTHO05D001329 2.7e-06 55.8 70 47.1
Nitab4.5_0009428g0010 Nicotiana tabacum HOM05D001501 ORTHO05D001329 2.7e-06 55.8 74 43.2
Oeu030085.1 Olea europaea HOM05D001501 ORTHO05D001329 2.7e-06 55.8 96 39.6
Solyc07g055270.1 Solanum lycopersicum HOM05D001501 ORTHO05D001329 2.7e-06 55.8 90 38.9
Sopen07g026950 Solanum pennellii HOM05D001501 ORTHO05D001329 2.7e-06 55.8 90 38.9
TAR636G0711 Trochodendron aralioides HOM05D001501 ORTHO05D001329 2.7e-06 55.8 94 37.2
arahy.Tifrunner.gnm1.ann1.KWW7Y5 Arachis hypogaea HOM05D001501 ORTHO05D001329 3.5e-06 55.5 92 38.0
CAN.G411.57 Capsicum annuum HOM05D001501 ORTHO05D001329 3.5e-06 55.5 81 39.5
ClCG07G002630 Citrullus lanatus HOM05D001501 ORTHO05D001329 3.5e-06 55.5 71 43.7
DCAR_013279 Daucus carota HOM05D001501 ORTHO05D001329 3.5e-06 55.5 83 38.6
MD05G1296400 Malus domestica HOM05D001501 ORTHO05D001329 3.5e-06 55.5 65 44.6
Nitab4.5_0000437g0160 Nicotiana tabacum HOM05D001501 ORTHO05D001329 3.5e-06 55.5 74 41.9
Phvul.006G173300 Phaseolus vulgaris HOM05D001501 ORTHO05D001329 3.5e-06 55.5 68 50.0
SalBow8G4768 Salvia bowleyana HOM05D010484 ORTHO05D010242 3.5e-06 55.5 86 44.2
Cpa.g.sc52.155 Carica papaya HOM05D001501 ORTHO05D001329 4.6e-06 55.1 75 40.0
Manes.16G042211 Manihot esculenta HOM05D001501 ORTHO05D001329 4.6e-06 55.1 104 33.7
Solyc10g084230.2 Solanum lycopersicum HOM05D001501 ORTHO05D001329 4.6e-06 55.1 103 35.9
VMungo0540G0954 Vigna mungo HOM05D001501 ORTHO05D001329 4.6e-06 55.1 88 44.3
Ah.09g233320 Amaranthus hybridus HOM05D001501 ORTHO05D001329 6.0e-06 54.7 108 36.1
arahy.Tifrunner.gnm1.ann1.T9ZPF9 Arachis hypogaea HOM05D001501 ORTHO05D001329 6.0e-06 54.7 94 37.2
A04p32370 Brassica napus HOM05D001501 ORTHO05D001329 6.0e-06 54.7 66 50.0
BraA04t18690Z Brassica rapa HOM05D001501 ORTHO05D001329 6.0e-06 54.7 66 50.0
DCAR_021298 Daucus carota HOM05D001501 ORTHO05D001329 6.0e-06 54.7 66 45.5
Migut.M00245 Erythranthe guttata HOM05D001501 ORTHO05D001329 6.0e-06 54.7 86 40.7
Medtr8g086820 Medicago truncatula HOM05D001501 ORTHO05D001329 6.0e-06 54.7 90 36.7
Nitab4.5_0008526g0010 Nicotiana tabacum HOM05D001501 ORTHO05D001329 6.0e-06 54.7 74 41.9
Sabra11G0054000 Salix brachista HOM05D001501 ORTHO05D001329 6.0e-06 54.7 64 48.4
Sabra11G0057500 Salix brachista HOM05D001501 ORTHO05D001329 6.0e-06 54.7 64 48.4
Sp4g24880 Schrenkiella parvula HOM05D001501 ORTHO05D001329 6.0e-06 54.7 72 47.2
Thecc.02G212700 Theobroma cacao HOM05D001501 ORTHO05D001329 6.0e-06 54.7 68 44.1
CiPaw.09G072400 Carya illinoinensis HOM05D001501 ORTHO05D001329 7.9e-06 54.3 91 39.6
Glyma.12G212200 Glycine max HOM05D001501 ORTHO05D001329 7.9e-06 54.3 78 39.7
Glyma.13G289500 Glycine max HOM05D001501 ORTHO05D001329 7.9e-06 54.3 73 41.1
Lalb_Chr18g0054731 Lupinus albus HOM05D001501 ORTHO05D001329 7.9e-06 54.3 88 39.8
Medtr2g016760 Medicago truncatula HOM05D001501 ORTHO05D001329 7.9e-06 54.3 64 45.3
Nn3g21114 Nelumbo nucifera HOM05D001501 ORTHO05D001329 7.9e-06 54.3 83 39.8
Nitab4.5_0007923g0030 Nicotiana tabacum HOM05D001501 ORTHO05D001329 7.9e-06 54.3 67 40.3
SalBow7G4494 Salvia bowleyana HOM05D001501 ORTHO05D001329 7.9e-06 54.3 73 42.5
Sopen02g021190 Solanum pennellii HOM05D001501 ORTHO05D001329 7.9e-06 54.3 76 38.2
TPR.G4514 Trifolium pratense HOM05D001501 ORTHO05D001329 7.9e-06 54.3 68 42.6


User provided reference genes

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