Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 0.0e+00 2752.2 1402 100.0
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 0.0e+00 1733.0 1432 64.7
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 0.0e+00 1731.1 1411 65.3
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 0.0e+00 1664.8 1424 61.9
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 0.0e+00 1494.2 1432 55.7
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 0.0e+00 1459.9 1473 54.4
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1427.2 1352 56.4
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 0.0e+00 1425.6 1423 54.2
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1418.3 1410 53.8
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1417.1 1408 53.6
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 0.0e+00 1411.0 1410 53.8
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1410.2 1406 53.5
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 0.0e+00 1410.2 1439 53.6
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1407.9 1406 55.1
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1405.6 1412 53.0
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 0.0e+00 1400.2 1436 54.7
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 0.0e+00 1400.2 1410 54.2
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 0.0e+00 1399.4 1416 54.9
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 0.0e+00 1386.7 1410 55.0
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 0.0e+00 1382.9 1424 53.8
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 0.0e+00 1378.6 1352 55.3
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1378.2 1395 54.1
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1377.8 1395 54.1
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 0.0e+00 1374.8 1455 52.3
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1373.6 1504 51.7
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 0.0e+00 1362.1 1453 52.4
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 0.0e+00 1349.0 1429 52.7
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 0.0e+00 1349.0 1410 53.1
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 0.0e+00 1348.6 1442 52.0
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 0.0e+00 1348.6 1397 53.3
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 0.0e+00 1343.2 1432 51.1
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 0.0e+00 1343.2 1422 51.5
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1330.5 1412 51.6
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 0.0e+00 1327.4 1332 54.5
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 0.0e+00 1312.7 1416 51.5
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 0.0e+00 1311.2 1457 51.2
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 0.0e+00 1307.7 1412 51.0
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1306.2 1431 50.8
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 0.0e+00 1298.5 1429 51.2
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 0.0e+00 1291.2 1425 51.4
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 0.0e+00 1286.2 1389 51.5
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 0.0e+00 1285.8 1389 50.9
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 0.0e+00 1281.5 1369 51.1
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1281.2 1414 51.3
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 0.0e+00 1279.6 1397 51.3
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 0.0e+00 1278.1 1433 50.7
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 0.0e+00 1268.8 1394 50.0
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1268.4 1411 50.3
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 0.0e+00 1267.7 1416 50.1
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 0.0e+00 1266.9 1427 49.9
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 0.0e+00 1256.9 1398 49.4
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 0.0e+00 1256.5 1404 50.9
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1256.5 1429 51.2
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1255.0 1385 50.3
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 0.0e+00 1254.6 1403 49.8
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 0.0e+00 1252.3 1395 50.0
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 0.0e+00 1251.9 1392 51.5
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 0.0e+00 1249.2 1408 49.0
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 0.0e+00 1248.4 1397 50.5
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 0.0e+00 1241.9 1220 54.2
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1237.6 1464 48.1
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1233.4 1442 48.7
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 0.0e+00 1230.7 1429 49.2
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1226.5 1421 49.5
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1221.8 1392 48.6
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 0.0e+00 1217.2 1393 48.5
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1216.8 1393 48.7
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 0.0e+00 1211.8 1395 48.6
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1205.7 1393 48.2
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 0.0e+00 1176.8 1423 47.9
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 0.0e+00 1172.5 1405 46.4
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1167.5 1614 44.2
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 0.0e+00 1166.4 1407 47.3
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 0.0e+00 1162.5 1129 54.8
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 0.0e+00 1162.1 1422 47.5
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 0.0e+00 1153.7 1376 49.1
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1151.0 1393 47.5
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 0.0e+00 1117.1 1128 54.7
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1085.1 1644 41.9
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 9.6e-312 1074.3 1391 45.1
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 2.6e-283 979.5 1074 52.8
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 2.0e-275 953.4 1032 50.3
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 7.8e-272 941.4 1023 51.5
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 7.3e-270 934.9 1187 44.9
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 6.0e-256 888.6 1016 50.7
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 2.0e-227 793.9 830 51.9
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 8.8e-223 778.5 883 49.7
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 4.4e-222 776.2 851 52.4
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 3.6e-216 756.5 751 53.1
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 5.2e-215 752.7 733 53.9
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 2.7e-187 660.6 1384 34.6
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 2.2e-181 641.0 1442 32.9
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 2.6e-174 617.5 523 58.5
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 2.3e-170 604.4 1470 31.2
Thecc.07G167700 Theobroma cacao HOM05D004277 ORTHO05D005148 1.9e-145 521.5 455 59.3
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 5.8e-142 510.0 630 46.8
TAR626G1109 Trochodendron aralioides HOM05D004277 ORTHO05D005148 7.9e-139 499.6 460 57.4
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.4e-132 478.8 664 41.4
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 1.3e-128 465.7 567 46.7
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 1.5e-126 458.8 565 46.7
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 7.7e-126 456.4 1039 32.9
Haze_07823 Corylus avellana HOM05D004277 ORTHO05D005148 8.2e-120 436.4 339 61.9
Cpa.g.sc34.11 Carica papaya HOM05D004277 ORTHO05D005148 2.2e-117 428.3 412 54.4
SEGI_07420 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.7e-96 359.0 470 41.9
Nitab4.5_0009962g0020 Nicotiana tabacum HOM05D004277 ORTHO05D005148 2.3e-90 338.6 265 64.2
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 3.4e-89 334.7 562 40.0
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 1.6e-83 315.8 839 32.4
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 3.6e-75 288.1 507 37.7
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 3.9e-69 268.1 445 36.6
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 1.2e-67 263.1 352 44.6
MELO3C008303.2 Cucumis melo HOM05D004277 ORTHO05D005148 6.8e-66 257.3 364 43.1
MSTRG.12674 Avicennia marina HOM05D004277 ORTHO05D005148 8.3e-64 250.4 168 73.8
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.5e-60 239.6 170 68.2
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 4.6e-54 218.0 138 73.9
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 1.5e-52 213.0 235 52.8
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.2e-51 209.9 366 38.3
MD05G1224300 Malus domestica HOM05D004277 ORTHO05D005148 7.6e-49 200.7 148 64.2
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 1.7e-48 199.5 407 37.1
Cpa.g.sc34.4 Carica papaya HOM05D004277 ORTHO05D005148 1.4e-47 196.4 330 37.6
MD10G1205800 Malus domestica HOM05D004277 ORTHO05D005148 1.1e-44 186.8 234 46.6
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 7.3e-44 184.1 1293 23.7
Zm00001eb146320 Zea mays HOM05D004277 ORTHO05D005148 1.4e-42 179.9 245 40.4
TAR624G0115 Trochodendron aralioides HOM05D004277 ORTHO05D005148 2.2e-40 172.6 192 52.1
Os10g0575800 Oryza sativa ssp. japonica HOM05D004277 ORTHO05D005148 6.4e-40 171.0 246 43.5
TPR.G40005 Trifolium pratense HOM05D004277 ORTHO05D005148 6.4e-40 171.0 149 58.4
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 6.6e-37 161.0 261 36.8
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 1.1e-36 160.2 1245 22.7
BcaB02g08672 Brassica carinata HOM05D004277 ORTHO05D005148 6.2e-35 154.5 176 50.0
CBR_g39747 Chara braunii HOM05D004277 ORTHO05D005148 6.9e-34 151.0 569 25.3
Zm00001eb060300 Zea mays HOM05D004277 ORTHO05D005148 4.6e-30 138.3 136 52.2
SHI21617 Sapria himalayana HOM05D004277 ORTHO05D005148 1.5e-28 133.3 135 52.6
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 1.3e-27 130.2 205 42.9
CBR_g39748 Chara braunii HOM05D004277 ORTHO05D005148 4.8e-27 128.3 442 29.2
CDE05G3501 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 2.5e-23 115.9 96 56.2
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 2.3e-21 109.4 585 22.9
MD10G1205500 Malus domestica HOM05D004277 ORTHO05D005148 8.7e-21 107.5 77 66.2
SHI21613 Sapria himalayana HOM05D004277 ORTHO05D002750 8.7e-21 107.5 152 42.1
MELO3C029569.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.1e-20 107.1 77 62.3
MELO3C027882.2 Cucumis melo HOM05D004277 ORTHO05D005148 2.8e-19 102.4 130 47.7
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 1.8e-18 99.8 167 36.5
Actinidia07382 Actinidia chinensis HOM05D004277 ORTHO05D005148 5.3e-18 98.2 273 33.3
Zm00001eb307990 Zea mays HOM05D004277 ORTHO05D005148 3.8e-16 92.0 100 45.0
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 8.4e-16 90.9 91 54.9
MD10G1205700 Malus domestica HOM05D004277 ORTHO05D005148 1.2e-14 87.0 103 49.5
TPR.G17466 Trifolium pratense HOM05D004277 ORTHO05D005148 1.9e-12 79.7 68 63.2
TPR.G28108 Trifolium pratense HOM05D004277 ORTHO05D005148 3.3e-12 79.0 94 43.6
Cpa.g.sc34.6 Carica papaya HOM05D004277 ORTHO05D005148 5.7e-12 78.2 85 40.0
Zm00001eb269250 Zea mays HOM05D004277 ORTHO05D005148 5.7e-12 78.2 95 41.1
Thecc.08G194100 Theobroma cacao HOM05D004277 ORTHO05D005148 9.7e-12 77.4 57 64.9
Hma1.2p1_0148F.1_g065920 Hydrangea macrophylla HOM05D001726 ORTHO05D001761 2.8e-11 75.9 106 40.6
SEGI_27653 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.4e-10 72.8 147 35.4
FAN06G0062 Fragaria x ananassa HOM05D016453 ORTHO05D017011 5.3e-10 71.6 188 31.9
FAN12G1216 Fragaria x ananassa HOM05D016453 ORTHO05D017011 1.2e-09 70.5 188 31.9
TPR.G236 Trifolium pratense HOM05D004277 ORTHO05D005148 1.2e-09 70.5 51 62.7
FvH4_7g12450 Fragaria vesca HOM05D016453 ORTHO05D017011 1.5e-09 70.1 93 46.2
FAN06G4064 Fragaria x ananassa HOM05D016453 ORTHO05D017011 3.4e-09 68.9 93 45.2
MD10G1205600 Malus domestica HOM05D004277 ORTHO05D005148 1.7e-08 66.6 60 50.0
Actinidia07375 Actinidia chinensis HOM05D004277 ORTHO05D005148 2.9e-08 65.9 141 32.6
Zm00001eb086610 Zea mays HOM05D004277 ORTHO05D005148 2.9e-08 65.9 102 40.2
Zm00001eb307980 Zea mays HOM05D004277 ORTHO05D005148 1.1e-07 63.9 98 37.8
Actinidia07374 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.9e-07 63.2 136 35.3
QL04p080502 Quercus lobata HOM05D004277 ORTHO05D005148 5.5e-07 61.6 61 52.5
Actinidia07381 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.2e-06 60.5 153 32.7
QL12p004446 Quercus lobata HOM05D004277 ORTHO05D050645 1.2e-06 60.5 65 46.2
SHI21618 Sapria himalayana HOM05D004277 ORTHO05D005148 2.7e-06 59.3 80 47.5


User provided reference genes

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