Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold238G43920 Striga asiatica HOM05D006117 ORTHO05D007996 2.4e-259 898.3 439 100.0
MSTRG.1022 Avicennia marina HOM05D006117 ORTHO05D007996 4.5e-173 611.7 427 70.7
Migut.C00400 Erythranthe guttata HOM05D006117 ORTHO05D007996 7.6e-173 610.9 430 68.8
SalBow7G4164 Salvia bowleyana HOM05D006117 ORTHO05D007996 2.1e-167 592.8 419 70.2
Oeu047247.2 Olea europaea HOM05D006117 ORTHO05D007996 7.6e-157 557.8 412 65.8
QL12p038374 Quercus lobata HOM05D006117 ORTHO05D007996 3.8e-156 555.4 420 63.1
Duzib093G0384 Durio zibethinus HOM05D006117 ORTHO05D007996 1.4e-155 553.5 426 64.6
Cfa013754 Carpinus fangiana HOM05D006117 ORTHO05D007996 1.2e-154 550.4 419 64.7
Prupe.1G420700 Prunus persica HOM05D006117 ORTHO05D007996 2.1e-154 549.7 424 62.7
TAR628G0216 Trochodendron aralioides HOM05D006117 ORTHO05D007996 1.8e-153 546.6 416 62.7
Ciclev10001149m.g Citrus clementina HOM05D006117 ORTHO05D007996 3.9e-153 545.4 415 63.9
RcHm_v2.0_Chr6g0309881 Rosa chinensis HOM05D006117 ORTHO05D007996 5.1e-153 545.0 419 61.8
COL.COLO4_28476 Corchorus olitorius HOM05D006117 ORTHO05D007996 3.3e-152 542.3 421 62.9
Thecc.08G085800 Theobroma cacao HOM05D006117 ORTHO05D007996 9.7e-152 540.8 420 62.9
unitig_26.g9869 Utricularia gibba HOM05D006117 ORTHO05D007996 6.3e-151 538.1 425 61.6
CiPaw.08G051200 Carya illinoinensis HOM05D006117 ORTHO05D007996 8.2e-151 537.7 415 63.9
FvH4_2g32820 Fragaria vesca HOM05D006117 ORTHO05D007996 1.1e-150 537.3 419 60.9
CANSAT25G2369 Cannabis sativa HOM05D006117 ORTHO05D007996 1.8e-150 536.6 428 61.0
FAN24G1443 Fragaria x ananassa HOM05D006117 ORTHO05D007996 1.8e-150 536.6 412 61.7
FAN20G1172 Fragaria x ananassa HOM05D006117 ORTHO05D007996 2.4e-150 536.2 418 60.0
Nitab4.5_0005915g0010 Nicotiana tabacum HOM05D006117 ORTHO05D007996 2.4e-150 536.2 403 62.3
Lj4C73T15 Lonicera japonica HOM05D006117 ORTHO05D007996 4.1e-150 535.4 420 60.2
FAN15G1845 Fragaria x ananassa HOM05D006117 ORTHO05D007996 1.2e-149 533.9 412 61.4
Manes.05G182800 Manihot esculenta HOM05D006117 ORTHO05D007996 1.2e-149 533.9 424 61.3
Cc10_g05140 Coffea canephora HOM05D006117 ORTHO05D007996 3.4e-149 532.3 402 63.4
Peaxi162Scf00028g00273 Petunia axillaris HOM05D006117 ORTHO05D007996 1.0e-148 530.8 412 61.7
Actinidia10214 Actinidia chinensis HOM05D006117 ORTHO05D007996 1.7e-148 530.0 421 61.8
Glyma.06G047700 Glycine max HOM05D006117 ORTHO05D007996 3.8e-148 528.9 404 61.4
Gohir.D05G214600 Gossypium hirsutum HOM05D006117 ORTHO05D007996 5.0e-148 528.5 419 61.3
MBI16_g39105_MAGBIO Magnolia biondii HOM05D006117 ORTHO05D007996 8.5e-148 527.7 416 62.5
Eucgr.F02231 Eucalyptus grandis HOM05D006117 ORTHO05D007996 1.1e-147 527.3 412 63.1
Gorai.009G221300 Gossypium raimondii HOM05D006117 ORTHO05D007996 5.5e-147 525.0 419 60.9
Gohir.A05G211300 Gossypium hirsutum HOM05D006117 ORTHO05D007996 9.4e-147 524.2 419 61.1
CAN.G112.13 Capsicum annuum HOM05D006117 ORTHO05D007996 3.9e-145 518.8 422 59.2
Medtr3g103300 Medicago truncatula HOM05D006117 ORTHO05D007996 3.9e-145 518.8 438 57.8
Psat5g038440 Pisum sativum HOM05D006117 ORTHO05D007996 6.7e-145 518.1 432 58.6
PGR031G1695 Punica granatum HOM05D006117 ORTHO05D007996 8.8e-145 517.7 422 60.4
VMungo1309G1718 Vigna mungo HOM05D006117 ORTHO05D007996 1.1e-144 517.3 424 57.5
Potri.014G014400 Populus trichocarpa HOM05D006117 ORTHO05D007996 1.5e-144 516.9 414 61.4
Sabra14G0008600 Salix brachista HOM05D006117 ORTHO05D007996 1.5e-144 516.9 425 60.0
Phvul.009G073200 Phaseolus vulgaris HOM05D006117 ORTHO05D007996 3.3e-144 515.8 402 60.0
Solyc05g050710.3 Solanum lycopersicum HOM05D006117 ORTHO05D007996 5.7e-144 515.0 420 60.2
TWI12G0297 Tripterygium wilfordii HOM05D006117 ORTHO05D007996 2.8e-143 512.7 416 61.3
DCAR_009868 Daucus carota HOM05D006117 ORTHO05D007996 1.1e-142 510.8 412 60.0
PGSC0003DMG400007000 Solanum tuberosum HOM05D006117 ORTHO05D007996 1.4e-142 510.4 400 61.5
CSS0025391 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 1.8e-142 510.0 419 59.2
Lj1g0000026 Lotus japonicus HOM05D006117 ORTHO05D007996 2.4e-142 509.6 404 60.1
CSS0015427 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 5.3e-142 508.4 419 58.9
ECA232G2767 Erigeron canadensis HOM05D006117 ORTHO05D007996 6.9e-142 508.1 413 58.4
Lalb_Chr08g0245231 Lupinus albus HOM05D006117 ORTHO05D007996 9.1e-142 507.7 424 58.3
Rhsim06G0063800 Rhododendron simsii HOM05D006117 ORTHO05D007996 1.2e-141 507.3 416 58.4
Hund05287 Selenicereus undatus HOM05D006117 ORTHO05D007996 2.0e-141 506.5 402 59.0
Ca_15895_v3 Cicer arietinum L. HOM05D006117 ORTHO05D007996 2.2e-140 503.1 418 58.4
HanXRQChr10g0279141 Helianthus annuus HOM05D006117 ORTHO05D007996 8.5e-140 501.1 398 59.8
arahy.Tifrunner.gnm1.ann1.6JMM3R Arachis hypogaea HOM05D006117 ORTHO05D007996 1.4e-139 500.4 421 58.9
Lsat_1_v5_gn_9_81040 Lactuca sativa HOM05D006117 ORTHO05D007996 1.4e-139 500.4 433 57.3
Nn5g30637 Nelumbo nucifera HOM05D006117 ORTHO05D007996 3.2e-139 499.2 423 58.2
FAN27G0951 Fragaria x ananassa HOM05D006117 ORTHO05D007996 2.1e-138 496.5 420 58.3
AUR62037469 Chenopodium quinoa HOM05D006117 ORTHO05D007996 3.0e-137 492.7 418 56.2
Sc15g0005470 Simmondsia chinensis HOM05D006117 ORTHO05D007996 3.0e-137 492.7 415 57.6
AUR62034997 Chenopodium quinoa HOM05D006117 ORTHO05D007996 8.8e-137 491.1 425 56.0
EL10Ac1g02358 Beta vulgaris HOM05D006117 ORTHO05D007996 2.6e-136 489.6 405 57.5
Haze_22413 Corylus avellana HOM05D006117 ORTHO05D007996 7.4e-136 488.0 426 58.7
CSS0008179 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 2.8e-135 486.1 419 56.3
CSS0023541 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 3.7e-135 485.7 419 56.3
CDE07G1235 Ceratophyllum demersum HOM05D006117 ORTHO05D007996 6.3e-135 485.0 412 57.0
Aqoxy6G02537 Aquilegia oxysepala HOM05D006117 ORTHO05D007996 5.3e-134 481.9 416 57.2
A07p11730 Brassica napus HOM05D006117 ORTHO05D007996 5.3e-134 481.9 435 56.1
GSVIVG01009315001 Vitis vinifera HOM05D006117 ORTHO05D007996 1.2e-133 480.7 412 56.8
AT1G27480 Arabidopsis thaliana HOM05D006117 ORTHO05D007996 1.5e-133 480.3 422 57.3
Aa31LG7G10150 Aethionema arabicum HOM05D006117 ORTHO05D007996 2.0e-133 479.9 425 58.1
Atru.chr13.856 Acer truncatum HOM05D006117 ORTHO05D007996 3.5e-133 479.2 433 55.7
BraA07t28958Z Brassica rapa HOM05D006117 ORTHO05D007996 4.5e-133 478.8 435 55.9
Thhalv10007681m.g Eutrema salsugineum HOM05D006117 ORTHO05D007996 4.5e-133 478.8 423 57.0
Carub.0001s2604 Capsella rubella HOM05D006117 ORTHO05D007996 5.9e-133 478.4 412 57.8
BcaC06g35298 Brassica carinata HOM05D006117 ORTHO05D007996 1.3e-132 477.2 435 56.1
Sed0008074 Sechium edule HOM05D006117 ORTHO05D007996 1.7e-132 476.9 422 56.9
AL1G40910 Arabidopsis lyrata HOM05D006117 ORTHO05D007996 2.2e-132 476.5 420 56.7
CsaV3_6G002500 Cucumis sativus L. HOM05D006117 ORTHO05D007996 2.2e-132 476.5 422 56.9
C07p17700 Brassica napus HOM05D006117 ORTHO05D007996 2.9e-132 476.1 436 55.7
CARHR027100 Cardamine hirsuta HOM05D006117 ORTHO05D007996 4.2e-131 472.2 421 55.8
Ah.05g167020 Amaranthus hybridus HOM05D006117 ORTHO05D007996 1.6e-130 470.3 399 57.9
BcaB03g13981 Brassica carinata HOM05D006117 ORTHO05D007996 1.6e-130 470.3 429 55.7
arahy.Tifrunner.gnm1.ann1.NM5DTL Arachis hypogaea HOM05D006117 ORTHO05D007996 2.7e-130 469.5 400 58.0
Sp1g23730 Schrenkiella parvula HOM05D006117 ORTHO05D007996 2.7e-130 469.5 403 58.8
ClCG08G002010 Citrullus lanatus HOM05D006117 ORTHO05D007996 1.4e-129 467.2 421 55.8
Os03g0730000 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 1.8e-129 466.8 397 58.2
THA.LOC104807059 Tarenaya hassleriana HOM05D006117 ORTHO05D007996 3.0e-129 466.1 418 55.5
PSO675G0076 Papaver somniferum HOM05D006117 ORTHO05D007996 5.2e-129 465.3 415 57.1
MELO3C025035.2 Cucumis melo HOM05D006117 ORTHO05D007996 4.4e-128 462.2 432 54.9
SEGI_31593 Sequoiadendron giganteum HOM05D006117 ORTHO05D007996 1.5e-115 420.6 395 51.4
Dinv39211 Davidia involucrata HOM05D006117 ORTHO05D007996 2.2e-111 406.8 287 66.6
Mapoly0123s0013 Marchantia polymorpha HOM05D006117 ORTHO05D007996 1.6e-101 374.0 415 46.7
AagrBONN_evm.TU.Sc2ySwM_344.1796 Anthoceros agrestis HOM05D006117 ORTHO05D007996 5.2e-97 359.0 393 47.1
SMO347G0464 Selaginella moellendorffii HOM05D006117 ORTHO05D007996 3.7e-95 352.8 422 44.5
vmacro21425 Vaccinium macrocarpon HOM05D006117 ORTHO05D007996 1.1e-94 351.3 295 58.0
Pp3c2_14510 Physcomitrium patens HOM05D006117 ORTHO05D007996 1.4e-94 350.9 395 46.1
Sopen05g029120 Solanum pennellii HOM05D006117 ORTHO05D007996 2.1e-90 337.0 289 58.8
Lalb_Chr08g0245251 Lupinus albus HOM05D006117 ORTHO05D007996 3.6e-90 336.3 294 55.4
Sc15g0005440 Simmondsia chinensis HOM05D006117 ORTHO05D007996 2.3e-89 333.6 294 56.1
Zm00001eb025570 Zea mays HOM05D006117 ORTHO05D007996 6.4e-87 325.5 383 44.9
Os03g0232800 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 1.2e-82 311.2 394 44.4
ATR0739G041 Amborella trichopoda HOM05D006117 ORTHO05D007996 2.8e-82 310.1 289 56.4
Os10g0163370 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 7.6e-72 275.4 403 42.9
Zm00001eb124520 Zea mays HOM05D006117 ORTHO05D007996 1.8e-65 254.2 403 36.7
Zm00001eb096490 Zea mays HOM05D006117 ORTHO05D007996 1.9e-62 244.2 414 36.7
Zm00001eb096400 Zea mays HOM05D006117 ORTHO05D007996 3.2e-62 243.4 407 37.3
Zm00001eb096390 Zea mays HOM05D006117 ORTHO05D007996 2.5e-59 233.8 396 37.1
Os02g0589000 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 9.6e-59 231.9 409 33.0
Os02g0590400 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 5.8e-56 222.6 415 34.2
Zm00001eb399490 Zea mays HOM05D006117 ORTHO05D007996 2.1e-50 204.1 274 42.7
Os02g0589700 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 1.2e-48 198.4 299 38.1
Glyma.04G047002 Glycine max HOM05D006117 ORTHO05D007996 3.0e-44 183.7 158 57.0
PRCOL_00003976 Prasinoderma coloniale HOM05D006117 ORTHO05D007996 9.0e-41 172.2 458 30.3
HPP92_023765 Vanilla planifolia HOM05D006117 ORTHO05D007996 1.5e-40 171.4 143 58.7
vmacro21426 Vaccinium macrocarpon HOM05D006117 ORTHO05D007996 8.4e-39 165.6 122 60.7
ATR0739G169 Amborella trichopoda HOM05D006117 ORTHO05D007996 1.8e-36 157.9 117 59.8
Lalb_Chr08g0245261 Lupinus albus HOM05D006117 ORTHO05D007996 3.9e-36 156.8 123 55.3
PGSC0003DMG400010519 Solanum tuberosum HOM05D006117 ORTHO05D007996 1.1e-14 85.5 72 55.6
BolC7t42277H Brassica oleracea HOM05D006117 ORTHO05D007996 3.2e-14 84.0 76 51.3
Os01g0946300 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 9.4e-14 82.4 160 35.0
Zm00001eb120460 Zea mays HOM05D006117 ORTHO05D007996 6.1e-13 79.7 95 44.2
Os02g0590200 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 1.1e-11 75.5 93 43.0
Mapoly0131s0029 Marchantia polymorpha HOM05D002501 ORTHO05D002952 1.4e-09 68.6 222 26.6
CsaV3_1G046370 Cucumis sativus L. HOM05D002501 ORTHO05D002952 2.4e-09 67.8 429 24.9
Lsat_1_v5_gn_8_2381 Lactuca sativa HOM05D002501 ORTHO05D002952 1.2e-08 65.5 223 26.5
Medtr2g075650 Medicago truncatula HOM05D006117 ORTHO05D007996 1.2e-08 65.5 49 61.2
HanXRQChr15g0488131 Helianthus annuus HOM05D002501 ORTHO05D002952 1.0e-07 62.4 438 23.7
unitig_899.g15368 Utricularia gibba HOM05D001762 ORTHO05D001774 1.0e-07 62.4 245 26.1
FAN09G1532 Fragaria x ananassa HOM05D002501 ORTHO05D002952 1.3e-07 62.0 222 26.1
Ciclev10011705m.g Citrus clementina HOM05D002501 ORTHO05D002952 1.7e-07 61.6 216 26.9
Pp3c22_13120 Physcomitrium patens HOM05D002501 ORTHO05D002952 1.7e-07 61.6 215 27.9
ClCG02G021780 Citrullus lanatus HOM05D001762 ORTHO05D001774 2.2e-07 61.2 274 27.0
FvH4_6g00170 Fragaria vesca HOM05D002501 ORTHO05D002952 2.2e-07 61.2 222 26.1
HanXRQChr08g0226181 Helianthus annuus HOM05D002501 ORTHO05D002952 2.2e-07 61.2 443 25.3
Psat7g130880 Pisum sativum HOM05D002501 ORTHO05D002952 2.2e-07 61.2 229 25.8
Gorai.004G264000 Gossypium raimondii HOM05D002501 ORTHO05D002952 2.9e-07 60.8 220 24.5
Gohir.A08G227100 Gossypium hirsutum HOM05D002501 ORTHO05D002952 3.8e-07 60.5 220 24.5
FAN02G1567 Fragaria x ananassa HOM05D002501 ORTHO05D002952 5.0e-07 60.1 230 26.1
Glyma.12G084000 Glycine max HOM05D001762 ORTHO05D001774 5.0e-07 60.1 244 27.0
VMungo1215G2327 Vigna mungo HOM05D001762 ORTHO05D001774 5.0e-07 60.1 240 27.1
Eucgr.B01436 Eucalyptus grandis HOM05D002501 ORTHO05D002952 6.5e-07 59.7 224 26.3
Phvul.011G088800 Phaseolus vulgaris HOM05D001762 ORTHO05D001774 6.5e-07 59.7 234 26.5
RcHm_v2.0_Chr3g0447541 Rosa chinensis HOM05D002501 ORTHO05D002952 6.5e-07 59.7 226 25.2
CsaV3_6G014580 Cucumis sativus L. HOM05D001762 ORTHO05D001774 8.5e-07 59.3 129 33.3
ECA233G2688 Erigeron canadensis HOM05D002501 ORTHO05D002952 8.5e-07 59.3 222 27.0
Ciclev10027727m.g Citrus clementina HOM05D001762 ORTHO05D001774 1.1e-06 58.9 243 26.3
Lj1A218T45 Lonicera japonica HOM05D001762 ORTHO05D001774 1.1e-06 58.9 120 32.5
AT3G44830 Arabidopsis thaliana HOM05D001762 ORTHO05D001774 1.5e-06 58.5 121 33.9
DCAR_006142 Daucus carota HOM05D001762 ORTHO05D001774 1.5e-06 58.5 129 31.0
Thecc.05G187600 Theobroma cacao HOM05D002501 ORTHO05D002952 1.5e-06 58.5 222 26.6
Lj1g0014123 Lotus japonicus HOM05D002501 ORTHO05D002952 1.9e-06 58.2 223 24.7
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 2.5e-06 57.8 258 25.2
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 2.5e-06 57.8 258 25.2
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 2.5e-06 57.8 259 25.5
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 2.5e-06 57.8 258 25.2
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 2.5e-06 57.8 259 25.5
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 2.5e-06 57.8 258 25.2
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 2.5e-06 57.8 258 25.2
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 2.5e-06 57.8 259 25.5
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 3.2e-06 57.4 258 25.6
arahy.Tifrunner.gnm1.ann1.31N1MT Arachis hypogaea HOM05D002501 ORTHO05D002952 3.2e-06 57.4 217 25.3
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 3.2e-06 57.4 258 25.6
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 3.2e-06 57.4 258 25.6
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 3.2e-06 57.4 258 25.6
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 3.2e-06 57.4 258 25.6
Oeu061167.1 Olea europaea HOM05D001762 ORTHO05D001774 3.2e-06 57.4 257 25.3
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 3.2e-06 57.4 258 25.6
vmacro19581 Vaccinium macrocarpon HOM05D002501 ORTHO05D002952 3.2e-06 57.4 223 26.5
AL3G12940 Arabidopsis lyrata HOM05D002501 ORTHO05D002952 4.2e-06 57.0 227 25.6
MELO3C008598.2 Cucumis melo HOM05D002501 ORTHO05D002952 4.2e-06 57.0 221 24.0
Lsat_1_v5_gn_8_2401 Lactuca sativa HOM05D002501 ORTHO05D002952 4.2e-06 57.0 223 25.1
Psat7g143920 Pisum sativum HOM05D001762 ORTHO05D001774 4.2e-06 57.0 236 26.7
THA.LOC104809891 Tarenaya hassleriana HOM05D001762 ORTHO05D001774 4.2e-06 57.0 110 32.7
COL.COLO4_30780 Corchorus olitorius HOM05D001762 ORTHO05D001774 5.5e-06 56.6 110 31.8
MELO3C021466.2 Cucumis melo HOM05D001762 ORTHO05D001774 5.5e-06 56.6 129 32.6
Duzib106G0244 Durio zibethinus HOM05D002501 ORTHO05D002952 5.5e-06 56.6 222 25.7
Haze_04600 Corylus avellana HOM05D002501 ORTHO05D002952 7.2e-06 56.2 239 23.0
Atru.chr12.1678 Acer truncatum HOM05D002501 ORTHO05D002952 9.4e-06 55.8 218 27.1
Migut.D02322 Erythranthe guttata HOM05D001762 ORTHO05D001774 9.4e-06 55.8 254 26.0
Sed0014126 Sechium edule HOM05D002501 ORTHO05D002952 9.4e-06 55.8 228 25.0
THA.LOC104820844 Tarenaya hassleriana HOM05D002501 ORTHO05D002952 9.4e-06 55.8 222 27.0


User provided reference genes

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