Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold238G43890 Striga asiatica HOM05D000535 ORTHO05D009010 6.7e-125 450.7 223 100.0
SGA_v2.0_scaffold238G43892 Striga asiatica HOM05D000535 ORTHO05D000427 1.6e-57 226.9 161 70.2
SGA_v2.0_scaffold238G43897 Striga asiatica HOM05D000535 ORTHO05D000427 6.9e-21 105.1 225 34.7
Cc10_g11720 Coffea canephora HOM05D000535 ORTHO05D000427 2.4e-13 80.1 214 31.8
Potri.004G067800 Populus trichocarpa HOM05D000535 ORTHO05D000427 7.6e-12 75.1 176 34.1
Cc00_g30520 Coffea canephora HOM05D000535 ORTHO05D000427 3.8e-11 72.8 214 29.4
Cc02_g29530 Coffea canephora HOM05D000535 ORTHO05D000427 4.9e-11 72.4 173 35.3
Duzib268G0791 Durio zibethinus HOM05D000535 ORTHO05D000427 4.9e-11 72.4 176 31.2
SGA_v2.0_scaffold14G07091 Striga asiatica HOM05D000535 ORTHO05D000427 4.9e-11 72.4 160 35.0
SGA_v2.0_scaffold14G07097 Striga asiatica HOM05D000535 ORTHO05D000427 6.5e-11 72.0 209 29.7
COL.COLO4_08723 Corchorus olitorius HOM05D000535 ORTHO05D000427 1.1e-10 71.2 183 35.5
Gorai.012G027700 Gossypium raimondii HOM05D000535 ORTHO05D000427 1.1e-10 71.2 192 33.3
CARHR066380 Cardamine hirsuta HOM05D000535 ORTHO05D000427 1.4e-10 70.9 195 33.3
COL.COLO4_16151 Corchorus olitorius HOM05D000535 ORTHO05D000427 1.9e-10 70.5 207 29.0
Sc14g0008170 Simmondsia chinensis HOM05D000535 ORTHO05D000427 1.9e-10 70.5 198 29.8
Duzib268G0986 Durio zibethinus HOM05D000535 ORTHO05D000427 2.5e-10 70.1 175 32.0
AL2G33090 Arabidopsis lyrata HOM05D000535 ORTHO05D000427 3.2e-10 69.7 182 33.0
Gohir.D04G025100 Gossypium hirsutum HOM05D000535 ORTHO05D000427 4.2e-10 69.3 192 32.8
Prupe.5G074500 Prunus persica HOM05D000535 ORTHO05D000427 4.2e-10 69.3 207 30.4
Sabra19G0098500 Salix brachista HOM05D000535 ORTHO05D050455 4.2e-10 69.3 162 35.8
COL.COLO4_29947 Corchorus olitorius HOM05D000535 ORTHO05D000427 5.5e-10 68.9 208 29.8
Gohir.A05G392000 Gossypium hirsutum HOM05D000535 ORTHO05D000427 5.5e-10 68.9 192 32.8
HanXRQChr06g0164731 Helianthus annuus HOM05D000535 ORTHO05D000427 5.5e-10 68.9 195 27.2
SalBow5G1184 Salvia bowleyana HOM05D000535 ORTHO05D000427 5.5e-10 68.9 173 31.2
DCAR_011409 Daucus carota HOM05D000535 ORTHO05D000427 7.1e-10 68.6 170 34.1
Thecc.03G051300 Theobroma cacao HOM05D000535 ORTHO05D000427 7.1e-10 68.6 161 33.5
Cc00_g04330 Coffea canephora HOM05D000535 ORTHO05D000427 2.1e-09 67.0 216 29.6
Duzib268G0452 Durio zibethinus HOM05D000535 ORTHO05D000427 2.1e-09 67.0 175 31.4
FAN13G2343 Fragaria x ananassa HOM05D000535 ORTHO05D000427 2.1e-09 67.0 211 31.8
Sabra19G0101900 Salix brachista HOM05D003420 ORTHO05D003970 2.1e-09 67.0 162 35.2
Thecc.03G051900 Theobroma cacao HOM05D000535 ORTHO05D000427 2.1e-09 67.0 176 33.0
Thecc.03G051600 Theobroma cacao HOM05D000535 ORTHO05D000427 2.7e-09 66.6 176 33.0
A02p17920 Brassica napus HOM05D007344 ORTHO05D009010 3.5e-09 66.2 145 35.2
BraA02t06839Z Brassica rapa HOM05D007344 ORTHO05D009010 3.5e-09 66.2 145 35.2
Duzib268G1756 Durio zibethinus HOM05D000535 ORTHO05D000427 3.5e-09 66.2 175 29.7
Gohir.D10G223500 Gossypium hirsutum HOM05D000535 ORTHO05D000427 3.5e-09 66.2 183 31.1
Gohir.D10G223600 Gossypium hirsutum HOM05D000535 ORTHO05D000427 3.5e-09 66.2 181 33.1
Gorai.011G254400 Gossypium raimondii HOM05D000535 ORTHO05D000427 3.5e-09 66.2 183 31.1
Thecc.05G197900 Theobroma cacao HOM05D000535 ORTHO05D000427 3.5e-09 66.2 173 34.1
Gorai.011G254600 Gossypium raimondii HOM05D000535 ORTHO05D000427 4.6e-09 65.9 181 33.1
Hma1.2p1_0807F.1_g221410 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 4.6e-09 65.9 193 30.6
SalBow5G3210 Salvia bowleyana HOM05D000535 ORTHO05D000427 4.6e-09 65.9 175 32.6
SGA_v2.0_scaffold14G07094 Striga asiatica HOM05D000535 ORTHO05D000427 4.6e-09 65.9 151 36.4
Dinv04609 Davidia involucrata HOM05D000535 ORTHO05D000427 6.0e-09 65.5 161 34.8
Migut.O00272 Erythranthe guttata HOM05D000535 ORTHO05D000427 6.0e-09 65.5 175 34.3
Lju170C19T0 Lonicera japonica HOM05D000535 ORTHO05D000427 6.0e-09 65.5 170 31.2
Solyc06g072230.1 Solanum lycopersicum HOM05D000535 ORTHO05D000427 6.0e-09 65.5 162 30.2
PGSC0003DMG400010131 Solanum tuberosum HOM05D000535 ORTHO05D000427 6.0e-09 65.5 183 30.6
MSTRG.10952 Avicennia marina HOM05D000535 ORTHO05D000427 1.0e-08 64.7 167 34.1
Aa31LG6G10960 Aethionema arabicum HOM05D007344 ORTHO05D009010 1.3e-08 64.3 152 34.2
MSTRG.10954 Avicennia marina HOM05D000535 ORTHO05D000427 1.3e-08 64.3 219 30.6
MSTRG.11530 Avicennia marina HOM05D000535 ORTHO05D000427 1.3e-08 64.3 104 42.3
BolC2t09025H Brassica oleracea HOM05D007344 ORTHO05D009010 1.3e-08 64.3 145 34.5
Dinv04608 Davidia involucrata HOM05D000535 ORTHO05D000427 1.3e-08 64.3 162 32.7
Duzib205G1520 Durio zibethinus HOM05D000535 ORTHO05D000427 1.3e-08 64.3 160 33.8
C02p29770 Brassica napus HOM05D007344 ORTHO05D009010 1.8e-08 63.9 145 34.5
C06p47530 Brassica napus HOM05D000535 ORTHO05D009010 1.8e-08 63.9 180 31.7
Gohir.D09G052700 Gossypium hirsutum HOM05D000535 ORTHO05D000427 1.8e-08 63.9 179 29.6
PGSC0003DMG400009512 Solanum tuberosum HOM05D010028 ORTHO05D012080 1.8e-08 63.9 180 31.1
BcaB05g24743 Brassica carinata HOM05D007344 ORTHO05D009010 2.3e-08 63.5 146 32.9
Duzib268G1310 Durio zibethinus HOM05D000535 ORTHO05D000427 2.3e-08 63.5 149 31.5
Sopen06g028550 Solanum pennellii HOM05D000535 ORTHO05D000427 2.3e-08 63.5 170 30.0
BcaC08g46756 Brassica carinata HOM05D000535 ORTHO05D009010 3.0e-08 63.2 180 30.6
Gohir.A09G051800 Gossypium hirsutum HOM05D000535 ORTHO05D000427 3.0e-08 63.2 179 30.2
Gohir.D10G224000 Gossypium hirsutum HOM05D000535 ORTHO05D000427 3.0e-08 63.2 152 33.6
Thecc.03G051800 Theobroma cacao HOM05D000535 ORTHO05D000427 3.0e-08 63.2 186 31.7
CAN.G65.72 Capsicum annuum HOM05D000535 ORTHO05D000427 3.9e-08 62.8 157 29.9
MELO3C002177.2 Cucumis melo HOM05D000535 ORTHO05D000427 5.1e-08 62.4 177 27.7
Duzib128G0529 Durio zibethinus HOM05D000535 ORTHO05D000427 5.1e-08 62.4 190 33.2
Gohir.D10G223650 Gossypium hirsutum HOM05D000535 ORTHO05D000427 5.1e-08 62.4 179 31.3
Gorai.011G254500 Gossypium raimondii HOM05D000535 ORTHO05D000427 5.1e-08 62.4 179 31.3
GSVIVG01012920001 Vitis vinifera HOM05D000535 ORTHO05D000427 5.1e-08 62.4 178 30.3
arahy.Tifrunner.gnm1.ann1.2J79JM Arachis hypogaea HOM05D000535 ORTHO05D000427 6.7e-08 62.0 179 29.1
A07p39300 Brassica napus HOM05D000535 ORTHO05D009010 6.7e-08 62.0 180 30.6
BraA07t31479Z Brassica rapa HOM05D000535 ORTHO05D009010 6.7e-08 62.0 180 30.6
Cpa.g.sc8.317 Carica papaya HOM05D000535 ORTHO05D000427 6.7e-08 62.0 194 28.4
Cc10_g11700 Coffea canephora HOM05D000535 ORTHO05D000427 6.7e-08 62.0 189 28.0
Lju170C17T0 Lonicera japonica HOM05D000535 ORTHO05D000427 6.7e-08 62.0 170 30.0
Lju170C18T0 Lonicera japonica HOM05D000535 ORTHO05D000427 6.7e-08 62.0 195 30.8
Sp5g28260 Schrenkiella parvula HOM05D000535 ORTHO05D009010 6.7e-08 62.0 177 33.3
THA.LOC104814041 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 6.7e-08 62.0 198 28.8
Lj9C411T7 Lonicera japonica HOM05D000535 ORTHO05D000427 8.7e-08 61.6 179 29.1
PGSC0003DMG400027052 Solanum tuberosum HOM05D000535 ORTHO05D000427 8.7e-08 61.6 170 29.4
GSVIVG01012936001 Vitis vinifera HOM05D000535 ORTHO05D000427 8.7e-08 61.6 193 31.6
Cc00_g31050 Coffea canephora HOM05D000535 ORTHO05D000427 1.1e-07 61.2 189 30.2
PGSC0003DMG400010128 Solanum tuberosum HOM05D010028 ORTHO05D012080 1.1e-07 61.2 180 30.0
Atru.chr6.1195 Acer truncatum HOM05D000535 ORTHO05D000427 1.5e-07 60.8 195 28.7
Atru.chr6.1198 Acer truncatum HOM05D000535 ORTHO05D000427 1.5e-07 60.8 195 28.7
Atru.chr6.1204 Acer truncatum HOM05D000535 ORTHO05D000427 1.5e-07 60.8 191 29.8
FvH4_5g18510 Fragaria vesca HOM05D000535 ORTHO05D000427 1.5e-07 60.8 212 30.2
Potri.019G088200 Populus trichocarpa HOM05D000535 ORTHO05D050455 1.5e-07 60.8 164 32.3
Prupe.5G074400 Prunus persica HOM05D000535 ORTHO05D000427 1.5e-07 60.8 170 31.2
COL.COLO4_16148 Corchorus olitorius HOM05D000535 ORTHO05D000427 1.9e-07 60.5 182 28.6
Hma1.2p1_0807F.1_g221420 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 1.9e-07 60.5 183 31.7
Lju170C20T6 Lonicera japonica HOM05D000535 ORTHO05D000427 1.9e-07 60.5 177 29.9
THA.LOC104814040 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 1.9e-07 60.5 172 31.4
Thecc.05G198000 Theobroma cacao HOM05D000535 ORTHO05D000427 1.9e-07 60.5 190 32.1
TAR374G0927 Trochodendron aralioides HOM05D000535 ORTHO05D000427 2.5e-07 60.1 179 30.7
Aqoxy6G01729 Aquilegia oxysepala HOM05D000535 ORTHO05D000427 3.3e-07 59.7 209 34.0
Cpa.g.sc2.361 Carica papaya HOM05D000535 ORTHO05D000427 3.3e-07 59.7 147 33.3
FAN13G1742 Fragaria x ananassa HOM05D000535 ORTHO05D000427 3.3e-07 59.7 190 31.1
Lju170C19T1 Lonicera japonica HOM05D000535 ORTHO05D000427 3.3e-07 59.7 178 31.5
Nitab4.5_0000477g0200 Nicotiana tabacum HOM05D000535 ORTHO05D000427 3.3e-07 59.7 153 30.1
Nitab4.5_0002771g0010 Nicotiana tabacum HOM05D000535 ORTHO05D000427 3.3e-07 59.7 155 29.7
GSVIVG01012922001 Vitis vinifera HOM05D000535 ORTHO05D000427 3.3e-07 59.7 196 32.1
Ciclev10022124m.g Citrus clementina HOM05D000535 ORTHO05D000427 4.3e-07 59.3 197 27.9
Duzib205G0258 Durio zibethinus HOM05D000535 ORTHO05D000427 4.3e-07 59.3 198 30.8
HanXRQChr06g0165021 Helianthus annuus HOM05D000535 ORTHO05D000427 4.3e-07 59.3 157 30.6
Hma1.2p1_1624F.1_g294263 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 4.3e-07 59.3 187 30.5
Solyc03g098790.3 Solanum lycopersicum HOM05D010028 ORTHO05D012080 4.3e-07 59.3 148 30.4
Cpa.g.sc58.133 Carica papaya HOM05D000535 ORTHO05D000427 5.7e-07 58.9 208 25.5
CsaV3_1G007570 Cucumis sativus L. HOM05D000535 ORTHO05D000427 5.7e-07 58.9 189 30.2
Dinv10708 Davidia involucrata HOM05D000535 ORTHO05D000427 5.7e-07 58.9 172 33.7
Hma1.2p1_0807F.1_g221380 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 5.7e-07 58.9 104 34.6
Hma1.2p1_0807F.1_g221390 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 5.7e-07 58.9 184 31.0
Hma1.2p1_1624F.1_g294280 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 5.7e-07 58.9 169 32.0
Gohir.A10G215000 Gossypium hirsutum HOM05D000535 ORTHO05D000427 7.4e-07 58.5 181 30.9
Sc14g0008190 Simmondsia chinensis HOM05D000535 ORTHO05D000427 7.4e-07 58.5 183 29.5
Atru.chr10.1154 Acer truncatum HOM05D000535 ORTHO05D000427 9.6e-07 58.2 187 31.6
Duzib128G1043 Durio zibethinus HOM05D000535 ORTHO05D000427 9.6e-07 58.2 173 30.6
Hma1.2p1_0135F.1_g061615 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 9.6e-07 58.2 185 30.8
Hma1.2p1_0135F.1_g061660 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 9.6e-07 58.2 185 30.8
Hma1.2p1_1624F.1_g294266 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 9.6e-07 58.2 185 30.8
COL.COLO4_16143 Corchorus olitorius HOM05D000535 ORTHO05D000427 1.3e-06 57.8 179 33.0
FAN18G1447 Fragaria x ananassa HOM05D002264 ORTHO05D000427 1.3e-06 57.8 209 29.7
Lj2P607T10 Lonicera japonica HOM05D000535 ORTHO05D000427 1.3e-06 57.8 201 29.9
CiPaw.16G075200 Carya illinoinensis HOM05D000535 ORTHO05D000427 2.1e-06 57.0 155 31.6
FAN08G0118 Fragaria x ananassa HOM05D000535 ORTHO05D000427 2.1e-06 57.0 194 27.8
Glyma.09G163100 Glycine max HOM05D000535 ORTHO05D000427 2.1e-06 57.0 178 29.8
Sopen03g029520 Solanum pennellii HOM05D010028 ORTHO05D012080 2.1e-06 57.0 173 30.6
vmacro18604 Vaccinium macrocarpon HOM05D000535 ORTHO05D000427 2.1e-06 57.0 179 30.2
Lj5P167T32 Lonicera japonica HOM05D000535 ORTHO05D000427 2.8e-06 56.6 156 32.7
FvH4_5g18500 Fragaria vesca HOM05D000535 ORTHO05D000427 3.7e-06 56.2 194 32.0
HanXRQChr06g0165011 Helianthus annuus HOM05D000535 ORTHO05D000427 3.7e-06 56.2 162 26.5
Hma1.2p1_0060F.1_g032810 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 3.7e-06 56.2 177 31.6
Nitab4.5_0007717g0030 Nicotiana tabacum HOM05D000535 ORTHO05D010923 3.7e-06 56.2 157 30.6
TWI12G0051 Tripterygium wilfordii HOM05D000535 ORTHO05D000427 3.7e-06 56.2 178 31.5
COL.COLO4_08721 Corchorus olitorius HOM05D000535 ORTHO05D000427 4.8e-06 55.8 173 32.4
Rhsim08G0010200 Rhododendron simsii HOM05D000535 ORTHO05D000427 4.8e-06 55.8 189 30.2
CAN.G65.71 Capsicum annuum HOM05D000535 ORTHO05D000427 6.3e-06 55.5 163 30.1
AUR62005782 Chenopodium quinoa HOM05D000535 ORTHO05D000427 8.2e-06 55.1 187 27.8
Lsat_1_v5_gn_3_3380 Lactuca sativa HOM05D000535 ORTHO05D000427 8.2e-06 55.1 173 25.4
Psat1g116360 Pisum sativum HOM05D000535 ORTHO05D000427 8.2e-06 55.1 202 25.7
PGR044G0702 Punica granatum HOM05D000535 ORTHO05D000427 8.2e-06 55.1 176 31.8


User provided reference genes

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