Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold238G43884 Striga asiatica HOM05D004812 ORTHO05D005721 3.2e-162 575.1 301 100.0
MSTRG.25014 Avicennia marina HOM05D004812 ORTHO05D005721 2.7e-84 316.2 296 61.8
MSTRG.923 Avicennia marina HOM05D004812 ORTHO05D005721 5.0e-83 312.0 301 59.8
Haze_22372 Corylus avellana HOM05D004812 ORTHO05D005721 6.6e-75 285.0 294 54.4
Cfa013725 Carpinus fangiana HOM05D004812 ORTHO05D005721 9.5e-74 281.2 294 54.1
TAR381G1267 Trochodendron aralioides HOM05D004812 ORTHO05D005721 4.7e-73 278.9 293 54.3
Cc10_g07760 Coffea canephora HOM05D004812 ORTHO05D005721 6.1e-73 278.5 307 53.4
QL09p016104 Quercus lobata HOM05D004812 ORTHO05D005721 1.4e-72 277.3 298 54.4
Prupe.1G418000 Prunus persica HOM05D004812 ORTHO05D005721 1.8e-72 276.9 297 54.9
Rhsim07G0216800 Rhododendron simsii HOM05D004812 ORTHO05D005721 4.0e-72 275.8 340 50.0
Dinv44924 Davidia involucrata HOM05D004812 ORTHO05D005721 5.2e-72 275.4 294 54.4
Gorai.009G222500 Gossypium raimondii HOM05D004812 ORTHO05D005721 5.2e-72 275.4 294 53.1
Atru.chr13.882 Acer truncatum HOM05D004812 ORTHO05D005721 6.8e-72 275.0 294 55.4
CiPaw.08G053200 Carya illinoinensis HOM05D004812 ORTHO05D005721 1.5e-71 273.9 293 54.6
CSS0032884 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 2.0e-71 273.5 291 55.3
Migut.C00441 Erythranthe guttata HOM05D004812 ORTHO05D005721 2.0e-71 273.5 296 54.7
Gohir.A05G212600 Gossypium hirsutum HOM05D004812 ORTHO05D005721 3.4e-71 272.7 294 52.4
Gohir.D06G024100 Gossypium hirsutum HOM05D004812 ORTHO05D005721 4.4e-71 272.3 288 53.5
Gorai.010G028600 Gossypium raimondii HOM05D004812 ORTHO05D005721 4.4e-71 272.3 288 53.5
Gohir.A06G026800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 9.8e-71 271.2 288 53.5
CiPaw.07G171000 Carya illinoinensis HOM05D004812 ORTHO05D005721 1.7e-70 270.4 294 54.4
Oeu048563.2 Olea europaea HOM05D004812 ORTHO05D005721 2.8e-70 269.6 305 55.7
Migut.N02802 Erythranthe guttata HOM05D004812 ORTHO05D005721 6.3e-70 268.5 301 52.2
Peaxi162Scf01161g00329 Petunia axillaris HOM05D004812 ORTHO05D005721 8.3e-70 268.1 296 55.7
Hma1.2p1_1230F.1_g268750 Hydrangea macrophylla HOM05D004812 ORTHO05D005721 1.1e-69 267.7 296 52.4
Duzib041G0236 Durio zibethinus HOM05D004812 ORTHO05D005721 3.1e-69 266.2 292 53.8
Thecc.08G083100 Theobroma cacao HOM05D004812 ORTHO05D005721 3.5e-68 262.7 295 52.9
Cpa.g.sc160.27 Carica papaya HOM05D004812 ORTHO05D005721 1.3e-67 260.8 279 55.9
Manes.05G184100 Manihot esculenta HOM05D004812 ORTHO05D005721 1.3e-67 260.8 296 53.7
Solyc04g077430.4 Solanum lycopersicum HOM05D004812 ORTHO05D005721 1.7e-67 260.4 296 55.7
Sopen04g031020 Solanum pennellii HOM05D004812 ORTHO05D005721 2.3e-67 260.0 296 55.7
MBI16_g36640_MAGBIO Magnolia biondii HOM05D004812 ORTHO05D005721 2.9e-67 259.6 288 52.4
ClCG08G016760 Citrullus lanatus HOM05D004812 ORTHO05D005721 5.0e-67 258.8 299 54.2
Potri.005G146600 Populus trichocarpa HOM05D004812 ORTHO05D005721 1.1e-66 257.7 299 50.8
Nn6g34543 Nelumbo nucifera HOM05D004812 ORTHO05D005721 1.5e-66 257.3 300 52.3
MELO3C010780.2 Cucumis melo HOM05D004812 ORTHO05D005721 1.9e-66 256.9 302 53.6
CsaV3_2G025860 Cucumis sativus L. HOM05D004812 ORTHO05D005721 2.5e-66 256.5 302 53.0
Ciclev10002309m.g Citrus clementina HOM05D004812 ORTHO05D005721 3.3e-66 256.1 296 54.4
Sabra02G0090600 Salix brachista HOM05D004812 ORTHO05D005721 4.3e-66 255.8 300 50.3
GSVIVG01009286001 Vitis vinifera HOM05D004812 ORTHO05D005721 4.3e-66 255.8 299 55.2
CAN.G416.6 Capsicum annuum HOM05D004812 ORTHO05D005721 5.6e-66 255.4 296 56.4
Duzib093G1850 Durio zibethinus HOM05D004812 ORTHO05D005721 1.6e-65 253.8 294 52.0
Nitab4.5_0001494g0140 Nicotiana tabacum HOM05D004812 ORTHO05D005721 2.1e-65 253.4 296 55.4
MD08G1076700 Malus domestica HOM05D004812 ORTHO05D005721 4.7e-65 252.3 294 53.4
Duzib041G0573 Durio zibethinus HOM05D004812 ORTHO05D005721 6.1e-65 251.9 278 53.2
MD15G1064000 Malus domestica HOM05D004812 ORTHO05D005721 1.0e-64 251.1 292 54.1
Lj1g0006267 Lotus japonicus HOM05D004812 ORTHO05D005721 6.8e-64 248.4 277 50.9
vmacro04604 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 8.9e-64 248.1 295 52.9
Glyma.04G048400 Glycine max HOM05D004812 ORTHO05D005721 2.0e-63 246.9 278 51.8
Eucgr.F02213 Eucalyptus grandis HOM05D004812 ORTHO05D005721 4.4e-63 245.7 295 51.2
arahy.Tifrunner.gnm1.ann1.HYM163 Arachis hypogaea HOM05D004812 ORTHO05D005721 7.5e-63 245.0 279 55.9
PGR031G3368 Punica granatum HOM05D004812 ORTHO05D005721 9.8e-63 244.6 297 53.9
Ca_15883_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 2.9e-62 243.0 278 54.3
arahy.Tifrunner.gnm1.ann1.PWJU0J Arachis hypogaea HOM05D004812 ORTHO05D005721 1.1e-61 241.1 279 55.9
RcHm_v2.0_Chr6g0310161 Rosa chinensis HOM05D004812 ORTHO05D005721 1.1e-61 241.1 295 52.2
Dinv39198 Davidia involucrata HOM05D004812 ORTHO05D005721 1.4e-61 240.7 176 70.5
Sed0005944 Sechium edule HOM05D004812 ORTHO05D005721 1.4e-61 240.7 298 51.3
Actinidia19286 Actinidia chinensis HOM05D004812 ORTHO05D005721 3.2e-61 239.6 276 52.9
Aqoxy6G02958 Aquilegia oxysepala HOM05D004812 ORTHO05D005721 3.2e-61 239.6 302 48.7
VMungo1309G0464 Vigna mungo HOM05D004812 ORTHO05D005721 4.1e-61 239.2 274 50.7
Lj4A77G54 Lonicera japonica HOM05D004812 ORTHO05D005721 9.2e-61 238.0 323 49.2
Gohir.D05G215800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 1.2e-60 237.7 269 49.8
Glyma.06G049600 Glycine max HOM05D004812 ORTHO05D005721 6.0e-60 235.3 277 50.9
CANSAT11G0724 Cannabis sativa HOM05D004812 ORTHO05D005721 1.0e-59 234.6 310 50.6
Potri.002G114600 Populus trichocarpa HOM05D004812 ORTHO05D005721 1.0e-59 234.6 300 49.0
Sp6g10230 Schrenkiella parvula HOM05D004812 ORTHO05D005721 1.0e-59 234.6 296 46.6
Thhalv10028923m.g Eutrema salsugineum HOM05D004812 ORTHO05D005721 1.5e-58 230.7 299 46.5
Lalb_Chr23g0267661 Lupinus albus HOM05D004812 ORTHO05D005721 1.5e-58 230.7 280 49.6
FAN15G0694 Fragaria x ananassa HOM05D004812 ORTHO05D005721 2.5e-58 229.9 301 48.2
Actinidia29636 Actinidia chinensis HOM05D004812 ORTHO05D005721 3.3e-58 229.6 268 50.4
Lsat_1_v5_gn_9_79341 Lactuca sativa HOM05D004812 ORTHO05D005721 4.3e-58 229.2 305 47.5
THA.LOC104799834 Tarenaya hassleriana HOM05D004812 ORTHO05D005721 7.3e-58 228.4 297 46.8
Psat5g042400 Pisum sativum HOM05D004812 ORTHO05D005721 1.2e-57 227.6 277 51.6
BcaB01g02879 Brassica carinata HOM05D004812 ORTHO05D005721 2.1e-57 226.9 295 45.8
FvH4_2g32490 Fragaria vesca HOM05D004812 ORTHO05D005721 2.8e-57 226.5 295 47.8
TWI36G1081 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 2.8e-57 226.5 300 48.0
arahy.Tifrunner.gnm1.ann1.4PX4MG Arachis hypogaea HOM05D004812 ORTHO05D005721 4.0e-56 222.6 284 49.3
AL6G41350 Arabidopsis lyrata HOM05D004812 ORTHO05D005721 5.2e-56 222.2 293 46.1
Medtr3g103530 Medicago truncatula HOM05D004812 ORTHO05D005721 1.2e-55 221.1 278 49.3
BcaC01g04783 Brassica carinata HOM05D004812 ORTHO05D005721 1.5e-55 220.7 298 45.0
TWI56G0383 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 1.5e-55 220.7 297 48.5
Aa31sc619G20 Aethionema arabicum HOM05D004812 ORTHO05D005721 2.0e-55 220.3 296 45.9
C03p33720 Brassica napus HOM05D004812 ORTHO05D005721 7.5e-55 218.4 298 45.0
unitig_744.g24118 Utricularia gibba HOM05D004812 ORTHO05D005721 9.8e-55 218.0 297 46.1
TPR.G30200 Trifolium pratense HOM05D004812 ORTHO05D005721 2.2e-54 216.9 280 48.9
Hund05266 Selenicereus undatus HOM05D004812 ORTHO05D005721 3.7e-54 216.1 282 49.3
Ah.05g166930 Amaranthus hybridus HOM05D004812 ORTHO05D005721 4.9e-54 215.7 290 45.9
Eucgr.F00104 Eucalyptus grandis HOM05D004812 ORTHO05D005721 5.4e-53 212.2 297 45.8
HanXRQChr04g0110461 Helianthus annuus HOM05D004812 ORTHO05D005721 9.2e-53 211.5 297 45.8
CDE02G0400 Ceratophyllum demersum HOM05D004812 ORTHO05D005721 1.2e-52 211.1 287 46.7
Nitab4.5_0024059g0010 Nicotiana tabacum HOM05D004812 ORTHO05D005721 1.3e-51 207.6 232 59.1
PGR083G2836 Punica granatum HOM05D004812 ORTHO05D005721 1.7e-51 207.2 293 46.1
Glyma.14G090500 Glycine max HOM05D004812 ORTHO05D005721 5.1e-51 205.7 272 47.8
AT4G07990 Arabidopsis thaliana HOM05D004812 ORTHO05D005721 1.5e-50 204.1 291 45.0
ECA232G4694 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.5e-50 203.4 280 46.1
Ca_06989_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 7.3e-50 201.8 279 47.0
PSO541G3106 Papaver somniferum HOM05D004812 ORTHO05D005721 9.5e-50 201.4 296 45.6
Lalb_Chr24g0399541 Lupinus albus HOM05D004812 ORTHO05D005721 1.2e-49 201.1 273 49.1
Sabra05G0117000 Salix brachista HOM05D004812 ORTHO05D005721 2.1e-49 200.3 182 58.2
EL10Ac1g02340 Beta vulgaris HOM05D004812 ORTHO05D005721 4.7e-49 199.1 299 44.8
Manes.18G050200 Manihot esculenta HOM05D004812 ORTHO05D005721 8.1e-49 198.4 183 61.7
PSO675G4508 Papaver somniferum HOM05D004812 ORTHO05D005721 8.1e-49 198.4 291 45.7
TPR.G13010 Trifolium pratense HOM05D004812 ORTHO05D005721 1.1e-48 198.0 279 47.0
Lj5g0016152 Lotus japonicus HOM05D004812 ORTHO05D005721 1.8e-48 197.2 275 49.1
CARHR259230 Cardamine hirsuta HOM05D004812 ORTHO05D005721 6.8e-48 195.3 296 42.9
HanXRQChr08g0226381 Helianthus annuus HOM05D004812 ORTHO05D005721 8.9e-48 194.9 292 42.5
FAN20G0597 Fragaria x ananassa HOM05D004812 ORTHO05D005721 1.5e-47 194.1 278 45.0
FAN27G1358 Fragaria x ananassa HOM05D004812 ORTHO05D005721 1.5e-47 194.1 278 45.0
PGSC0003DMG400004945 Solanum tuberosum HOM05D004812 ORTHO05D005721 2.6e-47 193.4 181 61.9
Os03g0728100 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 4.4e-47 192.6 301 40.9
Rhsim06G0065600 Rhododendron simsii HOM05D004812 ORTHO05D005721 2.2e-46 190.3 296 43.6
FAN24G1448 Fragaria x ananassa HOM05D004812 ORTHO05D005721 4.9e-46 189.1 278 44.2
Psat6g018520 Pisum sativum HOM05D004812 ORTHO05D005721 8.3e-46 188.3 269 45.4
ATR0019G011 Amborella trichopoda HOM05D004812 ORTHO05D005721 3.2e-45 186.4 235 51.1
Oeu038874.1 Olea europaea HOM05D004812 ORTHO05D005721 4.1e-45 186.0 207 52.2
Medtr1g017260 Medicago truncatula HOM05D004812 ORTHO05D005721 2.1e-44 183.7 300 42.3
Phvul.001G031700 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 4.6e-44 182.6 274 43.8
AUR62039348 Chenopodium quinoa HOM05D004812 ORTHO05D005721 6.0e-44 182.2 318 39.6
Carub.0006s2656 Capsella rubella HOM05D004812 ORTHO05D005721 1.3e-43 181.0 280 43.9
Sc02g0008200 Simmondsia chinensis HOM05D004812 ORTHO05D005721 1.3e-43 181.0 227 47.1
VMungo0647G0241 Vigna mungo HOM05D004812 ORTHO05D005721 4.7e-41 172.6 367 37.6
BolC3t15691H Brassica oleracea HOM05D004812 ORTHO05D005721 8.1e-41 171.8 182 52.2
A03p27930 Brassica napus HOM05D004812 ORTHO05D005721 3.1e-40 169.9 182 51.6
BraA03t12006Z Brassica rapa HOM05D004812 ORTHO05D005721 3.1e-40 169.9 182 51.6
COL.COLO4_28448 Corchorus olitorius HOM05D004812 ORTHO05D005721 1.2e-39 167.9 225 47.6
Duzib041G0112 Durio zibethinus HOM05D004812 ORTHO05D005721 2.2e-38 163.7 187 50.8
Zm00001eb215650 Zea mays HOM05D004812 ORTHO05D005721 2.2e-38 163.7 259 40.2
arahy.Tifrunner.gnm1.ann1.FJ07HR Arachis hypogaea HOM05D004812 ORTHO05D005721 6.4e-38 162.2 188 50.5
HPP92_028656 Vanilla planifolia HOM05D004812 ORTHO05D005721 5.4e-37 159.1 260 43.5
vmacro21405 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 1.1e-34 151.4 191 50.3
Zm00001eb299310 Zea mays HOM05D004812 ORTHO05D005721 1.1e-34 151.4 267 38.2
Os07g0124800 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 6.9e-32 142.1 299 36.1
ECA247G0897 Erigeron canadensis HOM05D004812 ORTHO05D005721 4.4e-31 139.4 235 40.9
CSS0043183 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 4.9e-30 136.0 181 54.7
Medtr3g103520 Medicago truncatula HOM05D004812 ORTHO05D005721 1.7e-27 127.5 273 36.3
AUR62034973 Chenopodium quinoa HOM05D004812 ORTHO05D005721 7.1e-21 105.5 260 33.8
Glyma.17G232245 Glycine max HOM05D004812 ORTHO05D005721 3.3e-18 96.7 114 49.1
HPP92_011732 Vanilla planifolia HOM05D004812 ORTHO05D005721 1.4e-13 81.3 95 49.5
Duzib041G0506 Durio zibethinus HOM05D004812 ORTHO05D005721 7.1e-13 79.0 95 50.5
SEGI_24355 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 9.3e-13 78.6 57 66.7
Mapoly0153s0040 Marchantia polymorpha HOM05D004812 ORTHO05D005721 1.6e-12 77.8 300 29.0
Phvul.L001695 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 1.6e-12 77.8 92 51.1
Actinidia19589 Actinidia chinensis HOM05D004812 ORTHO05D005721 3.9e-11 73.2 44 79.5
Glyma.14G121300 Glycine max HOM05D004812 ORTHO05D005721 1.9e-10 70.9 62 56.5
HanXRQChr08g0231951 Helianthus annuus HOM05D004812 ORTHO05D005721 2.5e-10 70.5 73 50.7
HPP92_017697 Vanilla planifolia HOM05D001988 ORTHO05D006298 3.3e-10 70.1 44 77.3
SEGI_07437 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 9.6e-10 68.6 104 44.2
AagrBONN_evm.TU.Sc2ySwM_228.2797 Anthoceros agrestis HOM05D004812 ORTHO05D005721 1.4e-08 64.7 307 25.1
HPP92_017696 Vanilla planifolia HOM05D004812 ORTHO05D005721 9.0e-08 62.0 101 42.6
AagrBONN_evm.TU.Sc2ySwM_344.5440 Anthoceros agrestis HOM05D004812 ORTHO05D005721 1.0e-06 58.5 57 52.6
HPP92_011733 Vanilla planifolia HOM05D004812 ORTHO05D005721 3.8e-06 56.6 42 64.3


User provided reference genes

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