Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold237G43812 Striga asiatica HOM05D004849 ORTHO05D005955 3.8e-162 574.7 279 100.0
MSTRG.4003 Avicennia marina HOM05D004849 ORTHO05D005955 1.2e-142 510.0 279 87.5
Peaxi162Scf00134g02031 Petunia axillaris HOM05D004849 ORTHO05D005955 9.8e-142 506.9 279 86.7
PGSC0003DMG400008991 Solanum tuberosum HOM05D004849 ORTHO05D005955 2.4e-140 502.3 279 86.4
Oeu059240.1 Olea europaea HOM05D004849 ORTHO05D005955 9.2e-140 500.4 278 86.7
Sopen01g031590 Solanum pennellii HOM05D004849 ORTHO05D005955 1.6e-139 499.6 279 86.0
Solyc01g079840.3 Solanum lycopersicum HOM05D004849 ORTHO05D005955 2.0e-139 499.2 279 85.7
Dinv44492 Davidia involucrata HOM05D004849 ORTHO05D005955 8.6e-138 493.8 279 84.6
CAN.G69.23 Capsicum annuum HOM05D004849 ORTHO05D005955 7.3e-137 490.7 279 84.9
CsaV3_3G013600 Cucumis sativus L. HOM05D004849 ORTHO05D005955 9.5e-137 490.3 279 83.5
SalBow2G0641 Salvia bowleyana HOM05D004849 ORTHO05D005955 1.6e-136 489.6 279 84.2
TAR362G1319 Trochodendron aralioides HOM05D004849 ORTHO05D005955 1.6e-136 489.6 279 82.4
Dinv38407 Davidia involucrata HOM05D004849 ORTHO05D005955 2.1e-136 489.2 279 83.5
ClCG05G005350 Citrullus lanatus HOM05D004849 ORTHO05D005955 4.7e-136 488.0 279 82.8
CSS0004513 Camellia sinensis var. sinensis HOM05D004849 ORTHO05D005955 6.2e-136 487.6 279 83.9
MELO3C006555.2 Cucumis melo HOM05D004849 ORTHO05D005955 1.1e-135 486.9 279 82.8
Migut.G00304 Erythranthe guttata HOM05D004849 ORTHO05D005955 1.1e-135 486.9 279 84.2
Lj6A574T38 Lonicera japonica HOM05D004849 ORTHO05D005955 1.8e-135 486.1 279 82.8
Rhsim04G0203300 Rhododendron simsii HOM05D004849 ORTHO05D005955 2.3e-135 485.7 279 83.9
Cc03_g03260 Coffea canephora HOM05D004849 ORTHO05D005955 6.8e-135 484.2 279 82.4
ECA236G3497 Erigeron canadensis HOM05D004849 ORTHO05D005955 6.8e-135 484.2 279 83.5
unitig_748.g8344 Utricularia gibba HOM05D004849 ORTHO05D005955 2.0e-134 482.6 267 86.1
Lalb_Chr20g0118511 Lupinus albus HOM05D004849 ORTHO05D005955 2.6e-134 482.3 279 81.0
DCAR_027166 Daucus carota HOM05D004849 ORTHO05D005955 3.4e-134 481.9 279 81.0
Actinidia23503 Actinidia chinensis HOM05D004849 ORTHO05D005955 5.8e-134 481.1 304 77.3
Ciclev10006509m.g Citrus clementina HOM05D004849 ORTHO05D005955 5.8e-134 481.1 279 81.4
Manes.03G182800 Manihot esculenta HOM05D004849 ORTHO05D005955 5.8e-134 481.1 279 80.3
Haze_00945 Corylus avellana HOM05D004849 ORTHO05D005955 7.5e-134 480.7 279 82.1
CANSAT78G0899 Cannabis sativa HOM05D004849 ORTHO05D005955 9.8e-134 480.3 279 81.0
TAR633G1443 Trochodendron aralioides HOM05D004849 ORTHO05D005955 9.8e-134 480.3 279 81.4
Lalb_Chr18g0056171 Lupinus albus HOM05D004849 ORTHO05D005955 1.3e-133 479.9 279 81.0
Cpa.g.sc147.13 Carica papaya HOM05D004849 ORTHO05D005955 1.7e-133 479.6 279 79.6
vmacro19618 Vaccinium macrocarpon HOM05D004849 ORTHO05D005955 1.7e-133 479.6 279 82.8
GSVIVG01017905001 Vitis vinifera HOM05D004849 ORTHO05D005955 1.7e-133 479.6 279 81.0
Lj4g0022520 Lotus japonicus HOM05D004849 ORTHO05D005955 2.9e-133 478.8 279 80.6
arahy.Tifrunner.gnm1.ann1.75KEF6 Arachis hypogaea HOM05D004849 ORTHO05D005955 3.7e-133 478.4 279 79.9
Hma1.2p1_0511F.1_g169010 Hydrangea macrophylla HOM05D004849 ORTHO05D005955 3.7e-133 478.4 279 81.4
Potri.008G204000 Populus trichocarpa HOM05D004849 ORTHO05D005955 3.7e-133 478.4 279 81.4
Manes.15G024600 Manihot esculenta HOM05D004849 ORTHO05D005955 6.4e-133 477.6 279 80.6
Medtr4g131690 Medicago truncatula HOM05D004849 ORTHO05D005955 6.4e-133 477.6 279 80.6
Sed0011286 Sechium edule HOM05D004849 ORTHO05D005955 6.4e-133 477.6 279 81.0
Thecc.04G224600 Theobroma cacao HOM05D004849 ORTHO05D005955 6.4e-133 477.6 279 80.3
Cfa015600 Carpinus fangiana HOM05D004849 ORTHO05D005955 8.3e-133 477.2 279 81.7
Phvul.003G091500 Phaseolus vulgaris HOM05D004849 ORTHO05D005955 8.3e-133 477.2 279 79.9
Eucgr.H03572 Eucalyptus grandis HOM05D004849 ORTHO05D005955 1.1e-132 476.9 278 81.7
VMungo1215G1989 Vigna mungo HOM05D004849 ORTHO05D005955 1.1e-132 476.9 279 80.3
Glyma.07G258000 Glycine max HOM05D004849 ORTHO05D005955 1.4e-132 476.5 279 79.9
PGR142G0613 Punica granatum HOM05D004849 ORTHO05D005955 1.4e-132 476.5 280 81.4
TWI73G0956 Tripterygium wilfordii HOM05D004849 ORTHO05D005955 1.9e-132 476.1 279 81.7
CiPaw.01G161400 Carya illinoinensis HOM05D004849 ORTHO05D005955 2.4e-132 475.7 279 80.3
DCAR_024593 Daucus carota HOM05D000983 ORTHO05D005955 3.2e-132 475.3 279 81.0
arahy.Tifrunner.gnm1.ann1.U1U343 Arachis hypogaea HOM05D004849 ORTHO05D005955 5.4e-132 474.6 277 79.4
Sabra08G0157700 Salix brachista HOM05D004849 ORTHO05D005955 1.2e-131 473.4 279 80.3
PSO170G1707 Papaver somniferum HOM05D004849 ORTHO05D005955 1.6e-131 473.0 279 78.5
Ca_21102_v3 Cicer arietinum L. HOM05D004849 ORTHO05D005955 2.1e-131 472.6 279 78.9
HanXRQChr16g0508681 Helianthus annuus HOM05D004849 ORTHO05D005955 2.7e-131 472.2 279 82.4
PSO302G0110 Papaver somniferum HOM05D004849 ORTHO05D005955 2.7e-131 472.2 279 78.9
Gohir.D09G216000 Gossypium hirsutum HOM05D004849 ORTHO05D005955 3.5e-131 471.9 279 79.6
Potri.010G031900 Populus trichocarpa HOM05D004849 ORTHO05D005955 4.6e-131 471.5 279 80.6
Sc13g0004120 Simmondsia chinensis HOM05D004849 ORTHO05D005955 4.6e-131 471.5 279 79.9
TWI09G1150 Tripterygium wilfordii HOM05D004849 ORTHO05D005955 1.7e-130 469.5 279 80.6
Prupe.1G153200 Prunus persica HOM05D004849 ORTHO05D005955 2.3e-130 469.2 276 78.6
COL.COLO4_26630 Corchorus olitorius HOM05D004849 ORTHO05D005955 3.9e-130 468.4 279 79.2
Glyma.17G016000 Glycine max HOM05D004849 ORTHO05D005955 3.9e-130 468.4 279 78.5
MD13G1185500 Malus domestica HOM05D004849 ORTHO05D005955 3.9e-130 468.4 279 77.8
QL06p003788 Quercus lobata HOM05D004849 ORTHO05D005955 5.1e-130 468.0 278 78.8
Gohir.A09G213680 Gossypium hirsutum HOM05D004849 ORTHO05D005955 1.1e-129 466.8 279 78.1
Atru.chr4.2537 Acer truncatum HOM05D004849 ORTHO05D005955 1.5e-129 466.5 281 79.0
Gorai.006G236400 Gossypium raimondii HOM05D004849 ORTHO05D005955 1.9e-129 466.1 280 78.9
Lj6C576T2 Lonicera japonica HOM05D004849 ORTHO05D005955 1.9e-129 466.1 284 80.3
RcHm_v2.0_Chr4g0417521 Rosa chinensis HOM05D004849 ORTHO05D005955 9.5e-129 463.8 277 78.7
Duzib151G0519 Durio zibethinus HOM05D004849 ORTHO05D005955 2.1e-128 462.6 279 77.4
Nn1g02186 Nelumbo nucifera HOM05D004849 ORTHO05D005955 1.4e-127 459.9 279 78.1
ATR0626G348 Amborella trichopoda HOM05D004849 ORTHO05D005955 5.2e-127 458.0 280 78.2
Ah.04g154300 Amaranthus hybridus HOM05D004849 ORTHO05D005955 2.6e-126 455.7 275 78.5
C03p10980 Brassica napus HOM05D004849 ORTHO05D005955 3.4e-126 455.3 279 77.4
BolC3t13567H Brassica oleracea HOM05D004849 ORTHO05D005955 3.4e-126 455.3 279 77.4
Thhalv10013467m.g Eutrema salsugineum HOM05D004849 ORTHO05D005955 3.4e-126 455.3 279 78.1
Hund12176 Selenicereus undatus HOM05D004849 ORTHO05D005955 5.8e-126 454.5 279 77.1
Aqoxy2G03291 Aquilegia oxysepala HOM05D004849 ORTHO05D005955 3.8e-125 451.8 309 71.2
A03p09400 Brassica napus HOM05D004849 ORTHO05D005955 3.8e-125 451.8 279 76.7
BraA03t10258Z Brassica rapa HOM05D004849 ORTHO05D005955 3.8e-125 451.8 279 76.7
FAN26G1719 Fragaria x ananassa HOM05D004849 ORTHO05D005955 1.9e-124 449.5 277 75.5
FAN22G1365 Fragaria x ananassa HOM05D004849 ORTHO05D005955 2.4e-124 449.1 277 75.5
Aa31LG11G10460 Aethionema arabicum HOM05D004849 ORTHO05D005955 3.2e-124 448.7 280 76.4
BcaC04g18590 Brassica carinata HOM05D004849 ORTHO05D005955 3.2e-124 448.7 275 77.1
BraA10t44115Z Brassica rapa HOM05D004849 ORTHO05D005955 3.2e-124 448.7 275 77.1
FvH4_4g14790 Fragaria vesca HOM05D004849 ORTHO05D005955 3.2e-124 448.7 277 75.8
BcaB08g36596 Brassica carinata HOM05D004849 ORTHO05D005955 5.4e-124 448.0 275 77.5
A10p20450 Brassica napus HOM05D004849 ORTHO05D005955 5.4e-124 448.0 275 77.1
FAN12G0879 Fragaria x ananassa HOM05D004849 ORTHO05D005955 9.2e-124 447.2 277 75.5
C09p57080 Brassica napus HOM05D004849 ORTHO05D005955 2.7e-123 445.7 275 76.7
FvH4_1g25030 Fragaria vesca HOM05D004849 ORTHO05D005955 1.3e-122 443.4 277 75.8
BolC9t58573H Brassica oleracea HOM05D004849 ORTHO05D005955 3.0e-122 442.2 275 76.4
AUR62038191 Chenopodium quinoa HOM05D004849 ORTHO05D005955 3.0e-122 442.2 279 76.3
AUR62038065 Chenopodium quinoa HOM05D004849 ORTHO05D005955 3.9e-122 441.8 279 76.0
Carub.0006s1751 Capsella rubella HOM05D004849 ORTHO05D005955 6.6e-122 441.0 279 74.9
FAN07G1248 Fragaria x ananassa HOM05D004849 ORTHO05D005955 6.6e-122 441.0 266 77.4
Lsat_1_v5_gn_9_81160 Lactuca sativa HOM05D004849 ORTHO05D005955 8.6e-122 440.7 279 76.0
EL10As3g23293 Beta vulgaris HOM05D004849 ORTHO05D005955 1.5e-121 439.9 279 76.3
SEGI_19294 Sequoiadendron giganteum HOM05D004849 ORTHO05D005955 3.6e-120 435.3 280 73.6
AL6G30630 Arabidopsis lyrata HOM05D004849 ORTHO05D005955 3.1e-119 432.2 279 73.5
Os01g0271500 Oryza sativa ssp. japonica HOM05D004849 ORTHO05D005955 2.6e-118 429.1 273 72.9
Eucgr.H03570 Eucalyptus grandis HOM05D004849 ORTHO05D005955 4.4e-118 428.3 278 76.3
Zm00001eb332890 Zea mays HOM05D004849 ORTHO05D005955 7.6e-118 427.6 273 72.9
AT5G19180 Arabidopsis thaliana HOM05D004849 ORTHO05D005955 3.8e-117 425.2 280 72.9
CARHR193770 Cardamine hirsuta HOM05D004849 ORTHO05D005955 7.1e-116 421.0 279 72.4
BcaB01g05137 Brassica carinata HOM05D004849 ORTHO05D005955 3.9e-114 415.2 279 72.8
BcaB01g04873 Brassica carinata HOM05D004849 ORTHO05D005955 1.1e-113 413.7 279 72.0
Duzib212G0178 Durio zibethinus HOM05D004849 ORTHO05D005955 5.3e-111 404.8 279 72.0
TPR.G37111 Trifolium pratense HOM05D004849 ORTHO05D005955 9.9e-110 400.6 289 70.2
FAN19G3009 Fragaria x ananassa HOM05D004849 ORTHO05D005955 1.6e-107 393.3 231 79.7
Sp6g25195 Schrenkiella parvula HOM05D004849 ORTHO05D005955 2.8e-104 382.5 216 82.4
CDE11G0641 Ceratophyllum demersum HOM05D004849 ORTHO05D005955 1.1e-100 370.5 276 66.3
MD16G1186500 Malus domestica HOM05D004849 ORTHO05D005955 9.3e-92 340.9 183 85.8
SHI00393 Sapria himalayana HOM05D004849 ORTHO05D005955 1.6e-91 340.1 271 62.7
Pp3c21_10350 Physcomitrium patens HOM05D004849 ORTHO05D005955 1.3e-88 330.5 281 54.8
vmacro19827 Vaccinium macrocarpon HOM05D004849 ORTHO05D005955 1.3e-88 330.5 179 86.0
Nitab4.5_0000630g0030 Nicotiana tabacum HOM05D004849 ORTHO05D005955 8.2e-88 327.8 195 85.1
SMO141G0184 Selaginella moellendorffii HOM05D004849 ORTHO05D005955 1.1e-87 327.4 266 59.4
Pp3c19_5590 Physcomitrium patens HOM05D004849 ORTHO05D005955 9.0e-87 324.3 281 54.1
Mapoly0032s0081 Marchantia polymorpha HOM05D004849 ORTHO05D005955 1.2e-86 323.9 281 56.2
PRCOL_00002962 Prasinoderma coloniale HOM05D004849 ORTHO05D005955 2.7e-83 312.8 245 59.6
CBR_g30851 Chara braunii HOM05D004849 ORTHO05D005955 2.7e-75 286.2 265 55.5
MSTRG.10007 Avicennia marina HOM05D004849 ORTHO05D005955 6.1e-75 285.0 145 91.7
Cre12.g491500 Chlamydomonas reinhardtii HOM05D004849 ORTHO05D005955 7.4e-73 278.1 236 59.7
MCO07G571 Micromonas commoda HOM05D004849 ORTHO05D005955 7.4e-73 278.1 254 53.5
HPP92_001335 Vanilla planifolia HOM05D004849 ORTHO05D005955 7.4e-73 278.1 144 88.9
Sed0000406 Sechium edule HOM05D004849 ORTHO05D005955 2.8e-72 276.2 144 89.6
Psat4g008440 Pisum sativum HOM05D004849 ORTHO05D005955 1.1e-71 274.2 145 87.6
FAN17G1787 Fragaria x ananassa HOM05D004849 ORTHO05D005955 2.4e-55 219.9 346 39.6
Nitab4.5_0012513g0010 Nicotiana tabacum HOM05D004849 ORTHO05D005955 5.9e-54 215.3 133 79.7
QL05p054428 Quercus lobata HOM05D004849 ORTHO05D005955 4.0e-50 202.6 103 82.5
Haze_27108 Corylus avellana HOM05D004849 ORTHO05D005955 1.4e-47 194.1 253 40.3
SalBow8G2518 Salvia bowleyana HOM05D004849 ORTHO05D005955 1.1e-44 184.5 175 60.6
AagrBONN_evm.TU.Sc2ySwM_368.1673 Anthoceros agrestis HOM05D004849 ORTHO05D005955 2.3e-34 150.2 84 72.6
Oeu030323.1 Olea europaea HOM05D004849 ORTHO05D005955 2.6e-33 146.7 164 50.6
RcHm_v2.0_Chr1g0343821 Rosa chinensis HOM05D004849 ORTHO05D005955 4.1e-31 139.4 73 82.2
MBI19_g14315_MAGBIO Magnolia biondii HOM05D004849 ORTHO05D005955 5.4e-31 139.0 98 69.4
RcHm_v2.0_Chr1g0328651 Rosa chinensis HOM05D004849 ORTHO05D005955 3.3e-28 129.8 73 78.1
SalBow1G6287 Salvia bowleyana HOM05D004849 ORTHO05D005955 4.3e-28 129.4 100 66.0
FAN03G2641 Fragaria x ananassa HOM05D001971 ORTHO05D029608 2.9e-16 90.1 62 74.2
FAN10G1946 Fragaria x ananassa HOM05D001971 ORTHO05D029608 2.9e-16 90.1 62 74.2
Zm00001eb346970 Zea mays HOM05D004849 ORTHO05D443254 5.4e-15 85.9 110 43.6
Duzib248G1279 Durio zibethinus HOM05D004318 ORTHO05D005690 2.1e-11 73.9 169 29.0
Zm00001eb343560 Zea mays HOM05D005945 ORTHO05D006749 3.6e-11 73.2 51 62.7
Cfa025508 Carpinus fangiana HOM05D004318 ORTHO05D005690 1.9e-07 60.8 94 31.9
CANSAT11G1266 Cannabis sativa HOM05D004318 ORTHO05D005690 2.4e-07 60.5 186 26.3
MD10G1068200 Malus domestica HOM05D004318 ORTHO05D005690 4.1e-07 59.7 197 25.9
Sc18g0005150 Simmondsia chinensis HOM05D004318 ORTHO05D005690 4.1e-07 59.7 197 26.9
HPP92_011807 Vanilla planifolia HOM05D004318 ORTHO05D005690 7.1e-07 58.9 161 29.8
HPP92_011808 Vanilla planifolia HOM05D004318 ORTHO05D005690 7.1e-07 58.9 161 29.8
Hma1.2p1_0066F.1_g036090 Hydrangea macrophylla HOM05D004318 ORTHO05D005690 2.7e-06 57.0 73 34.2
Hma1.2p1_0851F.1_g228380 Hydrangea macrophylla HOM05D004318 ORTHO05D005690 2.7e-06 57.0 178 27.0
Cc02_g17210 Coffea canephora HOM05D004318 ORTHO05D005690 3.5e-06 56.6 143 30.8
Cre06.g296983 Chlamydomonas reinhardtii HOM05D004318 ORTHO05D005690 4.6e-06 56.2 114 32.5
arahy.Tifrunner.gnm1.ann1.2GC3QC Arachis hypogaea HOM05D004318 ORTHO05D005690 6.0e-06 55.8 176 26.7
arahy.Tifrunner.gnm1.ann1.7SB82T Arachis hypogaea HOM05D004318 ORTHO05D005690 6.0e-06 55.8 176 26.7
Manes.04G086600 Manihot esculenta HOM05D004318 ORTHO05D005690 6.0e-06 55.8 204 24.0


User provided reference genes

Program Settings