Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold237G43792 Striga asiatica HOM05D005221 ORTHO05D006355 5.4e-110 401.0 197 100.0
SGA_v2.0_scaffold39G15291 Striga asiatica HOM05D005221 ORTHO05D006355 3.9e-36 155.6 223 48.9
Oeu037551.1 Olea europaea HOM05D005221 ORTHO05D006355 1.5e-27 127.1 243 38.7
TAR362G0899 Trochodendron aralioides HOM05D005221 ORTHO05D006355 5.7e-27 125.2 240 37.5
RcHm_v2.0_Chr4g0416801 Rosa chinensis HOM05D005221 ORTHO05D006355 9.7e-27 124.4 241 38.2
FvH4_4g15060 Fragaria vesca HOM05D005221 ORTHO05D006355 1.7e-26 123.6 243 37.9
FAN12G4146 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.7e-26 123.6 243 37.0
QL06p003360 Quercus lobata HOM05D005221 ORTHO05D006355 1.7e-26 123.6 237 36.7
Cfa015617 Carpinus fangiana HOM05D005221 ORTHO05D006355 2.2e-26 123.2 239 36.8
TPR.G5529 Trifolium pratense HOM05D005221 ORTHO05D006355 2.8e-26 122.9 254 35.4
Duzib151G0158 Durio zibethinus HOM05D005221 ORTHO05D006355 8.2e-26 121.3 246 37.8
Cpa.g.sc8.322 Carica papaya HOM05D005221 ORTHO05D006355 1.1e-25 120.9 246 37.8
Cc03_g03470 Coffea canephora HOM05D005221 ORTHO05D006355 1.1e-25 120.9 242 38.0
FAN22G0945 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.1e-25 120.9 243 36.2
FAN07G2107 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.4e-25 120.6 243 36.6
Duzib052G0196 Durio zibethinus HOM05D005221 ORTHO05D006355 1.8e-25 120.2 230 38.7
TWI53G0458 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 1.8e-25 120.2 251 37.1
Medtr1g104840 Medicago truncatula HOM05D005221 ORTHO05D006355 2.4e-25 119.8 246 35.0
MSTRG.21844 Avicennia marina HOM05D005221 ORTHO05D006355 3.1e-25 119.4 245 38.8
Potri.010G090700 Populus trichocarpa HOM05D005221 ORTHO05D006355 3.1e-25 119.4 238 39.1
Prupe.1G155500 Prunus persica HOM05D005221 ORTHO05D006355 3.1e-25 119.4 240 37.5
Manes.03G181200 Manihot esculenta HOM05D005221 ORTHO05D006355 4.1e-25 119.0 241 39.0
Potri.008G150300 Populus trichocarpa HOM05D005221 ORTHO05D006355 5.3e-25 118.6 236 37.7
CiPaw.02G095300 Carya illinoinensis HOM05D005221 ORTHO05D006355 9.1e-25 117.9 247 35.6
Thecc.04G227300 Theobroma cacao HOM05D005221 ORTHO05D006355 1.2e-24 117.5 237 36.7
Sed0008919 Sechium edule HOM05D005221 ORTHO05D006355 2.0e-24 116.7 252 35.7
CAN.G668.8 Capsicum annuum HOM05D005221 ORTHO05D006355 2.6e-24 116.3 247 36.0
Sabra08G0114400 Salix brachista HOM05D005221 ORTHO05D006355 2.6e-24 116.3 235 36.6
Lj5g0028012 Lotus japonicus HOM05D005221 ORTHO05D006355 3.4e-24 115.9 251 35.5
Aqoxy2G03348 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 4.5e-24 115.5 243 35.8
CiPaw.01G163700 Carya illinoinensis HOM05D005221 ORTHO05D006355 5.9e-24 115.2 162 45.7
Gohir.D09G216800 Gossypium hirsutum HOM05D005221 ORTHO05D006355 5.9e-24 115.2 250 33.6
Peaxi162Scf00437g00052 Petunia axillaris HOM05D005221 ORTHO05D006355 5.9e-24 115.2 245 35.1
Duzib212G0790 Durio zibethinus HOM05D005221 ORTHO05D006355 1.3e-23 114.0 237 36.7
Gohir.A09G214300 Gossypium hirsutum HOM05D005221 ORTHO05D006355 2.2e-23 113.2 250 34.8
Ciclev10005615m.g Citrus clementina HOM05D005221 ORTHO05D006355 2.9e-23 112.8 267 34.5
Gorai.006G237300 Gossypium raimondii HOM05D005221 ORTHO05D006355 2.9e-23 112.8 250 33.2
Manes.15G026700 Manihot esculenta HOM05D005221 ORTHO05D006355 2.9e-23 112.8 242 36.4
Nitab4.5_0001545g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 2.9e-23 112.8 245 33.5
PGSC0003DMG400011822 Solanum tuberosum HOM05D005221 ORTHO05D006355 2.9e-23 112.8 240 34.6
Nitab4.5_0000260g0100 Nicotiana tabacum HOM05D005221 ORTHO05D006355 3.8e-23 112.5 244 33.6
Phvul.007G054700 Phaseolus vulgaris HOM05D005221 ORTHO05D006355 6.5e-23 111.7 255 34.5
Solyc06g054280.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 6.5e-23 111.7 241 34.4
Sopen06g019400 Solanum pennellii HOM05D005221 ORTHO05D006355 6.5e-23 111.7 241 34.4
Actinidia23488 Actinidia chinensis HOM05D005221 ORTHO05D006355 1.4e-22 110.5 240 36.2
Ca_10924_v3 Cicer arietinum L. HOM05D005221 ORTHO05D006355 1.9e-22 110.2 254 35.0
COL.COLO4_06196 Corchorus olitorius HOM05D005221 ORTHO05D006355 1.9e-22 110.2 255 34.5
MELO3C014491.2 Cucumis melo HOM05D005221 ORTHO05D006355 1.9e-22 110.2 240 35.0
Sabra10G0052800 Salix brachista HOM05D005221 ORTHO05D006355 1.9e-22 110.2 234 37.2
MD16G1188800 Malus domestica HOM05D005221 ORTHO05D006355 2.5e-22 109.8 242 36.0
SGA_v2.0_scaffold10G05107 Striga asiatica HOM05D005221 ORTHO05D006355 2.5e-22 109.8 245 35.9
PGSC0003DMG400031851 Solanum tuberosum HOM05D005221 ORTHO05D006355 3.2e-22 109.4 242 35.5
Glyma.10G249900 Glycine max HOM05D005221 ORTHO05D006355 7.2e-22 108.2 258 34.1
Glyma.20G143700 Glycine max HOM05D005221 ORTHO05D006355 7.2e-22 108.2 254 34.3
CAN.G873.5 Capsicum annuum HOM05D005221 ORTHO05D006355 1.2e-21 107.5 243 32.9
CsaV3_6G038280 Cucumis sativus L. HOM05D005221 ORTHO05D006355 1.2e-21 107.5 234 34.6
DCAR_030618 Daucus carota HOM05D005221 ORTHO05D006355 1.2e-21 107.5 238 34.9
Solyc09g075740.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 1.2e-21 107.5 242 36.8
VMungo0720G0147 Vigna mungo HOM05D005221 ORTHO05D006355 1.2e-21 107.5 254 33.9
Nn4g26263 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.6e-21 107.1 227 35.2
Peaxi162Scf00642g00022 Petunia axillaris HOM05D005221 ORTHO05D006355 1.6e-21 107.1 241 36.5
Sopen09g030550 Solanum pennellii HOM05D005221 ORTHO05D006355 1.6e-21 107.1 244 36.1
Lj3P740T18 Lonicera japonica HOM05D005221 ORTHO05D006355 2.7e-21 106.3 228 33.8
TWI09G0254 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 2.7e-21 106.3 241 34.0
Lsat_1_v5_gn_5_148500 Lactuca sativa HOM05D005221 ORTHO05D006355 3.6e-21 105.9 227 37.4
MD13G1188400 Malus domestica HOM05D005221 ORTHO05D006355 6.1e-21 105.1 239 34.7
CSS0023930 Camellia sinensis var. sinensis HOM05D005221 ORTHO05D006355 7.9e-21 104.8 239 36.8
ClCG06G006000 Citrullus lanatus HOM05D005221 ORTHO05D006355 1.0e-20 104.4 228 35.1
Nn1g02242 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.0e-20 104.4 260 33.5
ECA234G2268 Erigeron canadensis HOM05D005221 ORTHO05D006355 1.4e-20 104.0 223 35.4
Sed0012211 Sechium edule HOM05D005221 ORTHO05D006355 1.4e-20 104.0 230 36.5
Migut.N00171 Erythranthe guttata HOM05D005221 ORTHO05D006355 1.8e-20 103.6 266 33.5
Lalb_Chr06g0160581 Lupinus albus HOM05D005221 ORTHO05D006355 3.9e-20 102.4 247 33.2
HanXRQChr10g0296561 Helianthus annuus HOM05D005221 ORTHO05D006355 5.1e-20 102.1 233 34.3
DCAR_002395 Daucus carota HOM05D005221 ORTHO05D006355 2.0e-19 100.1 243 35.8
Nitab4.5_0000321g0080 Nicotiana tabacum HOM05D005221 ORTHO05D006355 3.3e-19 99.4 236 34.3
TAR636G2071 Trochodendron aralioides HOM05D002203 ORTHO05D002647 3.3e-19 99.4 161 43.5
Rhsim04G0205100 Rhododendron simsii HOM05D005221 ORTHO05D006355 4.4e-19 99.0 246 35.0
FAN17G2349 Fragaria x ananassa HOM05D005221 ORTHO05D006355 7.4e-19 98.2 208 35.6
Sc19g0004310 Simmondsia chinensis HOM05D005221 ORTHO05D006355 1.3e-18 97.4 258 32.9
HanXRQChr04g0110301 Helianthus annuus HOM05D005221 ORTHO05D006355 2.8e-18 96.3 214 34.6
Hma1.2p1_0511F.1_g168910 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 2.8e-18 96.3 147 41.5
PSO302G0248 Papaver somniferum HOM05D005221 ORTHO05D006355 8.2e-18 94.7 134 44.0
EL10As3g23360 Beta vulgaris HOM05D005221 ORTHO05D006355 9.1e-17 91.3 271 32.1
CANSAT78G1299 Cannabis sativa HOM05D005221 ORTHO05D006355 2.6e-16 89.7 266 31.2
MSTRG.4014 Avicennia marina HOM05D005221 ORTHO05D006355 4.5e-16 89.0 176 35.8
PGR004G1499 Punica granatum HOM05D005221 ORTHO05D006355 4.5e-16 89.0 261 32.6
THA.LOC104802759 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 5.9e-16 88.6 220 33.6
Dinv38425 Davidia involucrata HOM05D005221 ORTHO05D006355 1.0e-15 87.8 167 36.5
A05p42050 Brassica napus HOM05D005221 ORTHO05D006355 2.9e-15 86.3 212 34.0
Eucgr.B01092 Eucalyptus grandis HOM05D005221 ORTHO05D006355 3.8e-15 85.9 171 37.4
AT3G05980 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 5.0e-15 85.5 233 33.0
BraA05t22925Z Brassica rapa HOM05D005221 ORTHO05D006355 5.0e-15 85.5 212 34.0
Hma1.2p1_0995F.1_g245620 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 5.0e-15 85.5 160 35.6
MBI17_g31753_MAGBIO Magnolia biondii HOM05D005221 ORTHO05D006355 5.0e-15 85.5 214 34.1
Nitab4.5_0007609g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 5.0e-15 85.5 159 39.0
AL3G16790 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 6.5e-15 85.1 158 39.2
BraA01t04457Z Brassica rapa HOM05D005221 ORTHO05D006355 8.5e-15 84.7 224 34.8
Sc13g0004240 Simmondsia chinensis HOM05D005221 ORTHO05D006355 8.5e-15 84.7 239 32.2
THA.LOC104818779 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 8.5e-15 84.7 226 33.6
DCAR_024599 Daucus carota HOM05D005221 ORTHO05D006355 1.1e-14 84.3 231 33.8
Oeu029026.1 Olea europaea HOM05D005221 ORTHO05D006355 1.5e-14 84.0 161 35.4
BolC3t13571H Brassica oleracea HOM05D005221 ORTHO05D006355 2.5e-14 83.2 243 32.9
BcaB01g04866 Brassica carinata HOM05D005221 ORTHO05D006355 3.2e-14 82.8 245 33.1
C05p61280 Brassica napus HOM05D005221 ORTHO05D006355 4.2e-14 82.4 216 31.9
BolC5t34787H Brassica oleracea HOM05D005221 ORTHO05D006355 4.2e-14 82.4 216 31.9
Carub.0003s0539 Capsella rubella HOM05D005221 ORTHO05D006355 5.5e-14 82.0 156 39.1
Aqoxy5G00503 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 7.2e-14 81.6 241 31.5
BcaC05g30072 Brassica carinata HOM05D005221 ORTHO05D006355 7.2e-14 81.6 215 31.6
BraA03t10262Z Brassica rapa HOM05D005221 ORTHO05D006355 7.2e-14 81.6 224 33.0
A03p09440 Brassica napus HOM05D005221 ORTHO05D006355 1.2e-13 80.9 225 32.9
C03p11020 Brassica napus HOM05D005221 ORTHO05D006355 1.6e-13 80.5 230 34.3
Thhalv10021379m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 1.6e-13 80.5 167 38.9
Sp3g04920 Schrenkiella parvula HOM05D005221 ORTHO05D006355 2.7e-13 79.7 161 38.5
CARHR080490 Cardamine hirsuta HOM05D005221 ORTHO05D006355 3.6e-13 79.3 151 39.1
Lj6P597T84 Lonicera japonica HOM05D005221 ORTHO05D006355 3.6e-13 79.3 152 35.5
PGR142G0441 Punica granatum HOM05D005221 ORTHO05D006355 2.3e-12 76.6 189 37.0
BcaB01g05141 Brassica carinata HOM05D005221 ORTHO05D006355 5.2e-12 75.5 230 34.8
BcaC09g47869 Brassica carinata HOM05D005221 ORTHO05D006355 5.2e-12 75.5 171 33.9
BolC1t05645H Brassica oleracea HOM05D005221 ORTHO05D006355 1.1e-11 74.3 173 33.5
Aa31LG5G16450 Aethionema arabicum HOM05D005221 ORTHO05D006355 3.3e-11 72.8 222 32.4
AT5G19340 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 4.4e-11 72.4 263 30.0
BcaNung07026 Brassica carinata HOM05D005221 ORTHO05D006355 9.7e-11 71.2 182 35.2
BolC9t58548H Brassica oleracea HOM05D005221 ORTHO05D006355 9.7e-11 71.2 258 30.6
A10p20340 Brassica napus HOM05D005221 ORTHO05D006355 2.8e-10 69.7 262 30.2
BraA10t44105Z Brassica rapa HOM05D005221 ORTHO05D006355 2.8e-10 69.7 262 30.2
Atru.chr4.2515 Acer truncatum HOM05D005221 ORTHO05D006355 6.3e-10 68.6 212 33.0
BcaC04g18576 Brassica carinata HOM05D005221 ORTHO05D006355 6.3e-10 68.6 264 29.9
C09p56940 Brassica napus HOM05D005221 ORTHO05D006355 6.3e-10 68.6 264 29.9
Thhalv10016073m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 6.3e-10 68.6 261 30.7
Psat6g208720 Pisum sativum HOM05D005221 ORTHO05D006355 7.0e-09 65.1 63 49.2
AL6G30830 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 1.3e-07 60.8 243 29.2
Ah.04g154490 Amaranthus hybridus HOM05D005221 ORTHO05D006355 2.2e-07 60.1 124 36.3
CARHR193620 Cardamine hirsuta HOM05D005221 ORTHO05D006355 3.8e-07 59.3 268 28.7
AUR62038640 Chenopodium quinoa HOM05D005221 ORTHO05D006355 1.1e-06 57.8 179 31.3
MBI18_g28204_MAGBIO Magnolia biondii HOM05D003370 ORTHO05D003848 1.5e-06 57.4 155 32.9
BcaB08g36581 Brassica carinata HOM05D005221 ORTHO05D006355 1.9e-06 57.0 252 28.2
TAR627G0521 Trochodendron aralioides HOM05D003370 ORTHO05D003848 1.9e-06 57.0 135 35.6
Sed0006922 Sechium edule HOM05D003370 ORTHO05D003848 2.5e-06 56.6 136 33.1
Sp6g25070 Schrenkiella parvula HOM05D005221 ORTHO05D006355 4.2e-06 55.8 249 29.3


User provided reference genes

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