Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 9.7e-141 503.4 249 100.0
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.2e-114 416.8 250 81.6
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 3.8e-113 411.8 250 80.8
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 1.8e-110 402.9 248 77.8
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 2.2e-108 396.0 248 75.4
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 3.7e-108 395.2 248 76.2
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 1.8e-107 392.9 248 75.4
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.8e-107 392.9 248 77.0
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 2.4e-107 392.5 248 75.0
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 9.2e-107 390.6 248 74.6
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 9.2e-107 390.6 248 74.6
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 2.7e-106 389.0 248 75.0
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 4.5e-106 388.3 248 74.2
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 4.5e-106 388.3 248 75.0
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 7.8e-106 387.5 248 74.2
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 1.3e-105 386.7 248 73.0
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 1.3e-105 386.7 248 73.8
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 2.9e-105 385.6 248 73.8
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 5.0e-105 384.8 249 74.7
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 6.6e-105 384.4 248 74.6
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 8.6e-105 384.0 248 72.6
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 4.3e-104 381.7 248 72.6
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 9.5e-104 380.6 253 72.3
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 1.6e-103 379.8 248 73.0
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 4.7e-103 378.3 248 73.0
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 6.1e-103 377.9 241 74.7
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 8.0e-103 377.5 248 74.2
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 1.4e-102 376.7 251 70.9
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 1.8e-102 376.3 248 73.8
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 4.0e-102 375.2 241 74.3
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 8.9e-102 374.0 248 73.0
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 2.0e-101 372.9 248 72.2
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 4.4e-101 371.7 259 70.7
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 5.7e-101 371.3 248 70.6
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 7.5e-101 370.9 249 70.3
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 7.5e-101 370.9 248 71.4
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 1.7e-100 369.8 248 71.8
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 2.2e-100 369.4 248 71.8
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 2.2e-100 369.4 248 72.2
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 2.9e-100 369.0 248 70.2
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 2.9e-100 369.0 249 72.7
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 3.7e-100 368.6 248 71.4
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 4.9e-100 368.2 248 72.2
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 4.9e-100 368.2 248 71.4
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 6.4e-100 367.9 248 72.2
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 6.4e-100 367.9 248 72.2
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 6.4e-100 367.9 248 71.8
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 1.4e-99 366.7 248 72.2
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 1.4e-99 366.7 248 71.8
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 1.8e-99 366.3 248 71.0
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 1.8e-99 366.3 248 71.0
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 2.4e-99 365.9 250 69.2
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 3.2e-99 365.5 248 71.8
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 3.2e-99 365.5 248 69.8
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 4.1e-99 365.2 248 71.8
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 5.4e-99 364.8 249 72.7
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 5.4e-99 364.8 248 72.2
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 5.4e-99 364.8 250 69.2
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 5.4e-99 364.8 248 71.0
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 7.0e-99 364.4 248 72.2
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 7.0e-99 364.4 249 72.3
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 9.2e-99 364.0 248 71.0
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 2.7e-98 362.5 250 68.0
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 4.6e-98 361.7 248 68.5
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 7.8e-98 360.9 248 69.8
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 7.8e-98 360.9 249 70.3
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 7.8e-98 360.9 249 71.1
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 1.0e-97 360.5 250 68.4
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 1.7e-97 359.8 248 70.2
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 1.7e-97 359.8 248 68.5
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 3.0e-97 359.0 238 71.8
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 3.0e-97 359.0 250 67.6
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 5.0e-97 358.2 248 70.6
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 6.6e-97 357.8 249 71.5
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 8.6e-97 357.5 248 68.5
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 8.6e-97 357.5 250 67.2
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 8.6e-97 357.5 250 67.6
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 1.1e-96 357.1 241 69.7
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 1.1e-96 357.1 248 71.0
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 1.9e-96 356.3 249 69.5
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 4.3e-96 355.1 248 71.0
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 4.3e-96 355.1 251 70.1
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 5.6e-96 354.8 248 68.5
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 5.6e-96 354.8 244 70.9
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 5.6e-96 354.8 244 70.9
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 5.6e-96 354.8 249 70.7
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 7.3e-96 354.4 292 61.6
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 9.5e-96 354.0 248 71.0
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.2e-95 353.6 248 70.6
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 2.8e-95 352.4 248 70.6
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 2.8e-95 352.4 248 70.6
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 2.8e-95 352.4 244 70.5
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 4.7e-95 351.7 241 69.7
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 6.2e-95 351.3 249 67.9
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 6.2e-95 351.3 250 65.6
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 1.4e-94 350.1 243 70.8
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 1.4e-94 350.1 243 70.8
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 2.3e-94 349.4 250 66.8
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 6.8e-94 347.8 272 64.3
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 6.8e-94 347.8 272 64.3
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 6.8e-94 347.8 243 69.5
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 6.8e-94 347.8 248 67.7
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 8.9e-94 347.4 248 66.9
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 2.2e-92 342.8 241 68.5
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 1.1e-91 340.5 248 69.0
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 1.9e-91 339.7 248 65.7
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 9.2e-91 337.4 248 63.7
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 1.2e-90 337.0 251 63.7
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 2.7e-90 335.9 245 66.9
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 2.7e-90 335.9 249 65.9
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 3.5e-90 335.5 292 59.6
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 7.8e-90 334.3 225 69.8
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 1.0e-89 334.0 248 62.9
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 1.3e-89 333.6 251 66.1
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 3.0e-89 332.4 248 62.9
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 1.2e-87 327.0 172 90.1
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 1.6e-87 326.6 242 65.3
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 6.2e-87 324.7 182 82.4
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 2.3e-86 322.8 251 64.9
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 4.0e-86 322.0 254 62.2
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 2.6e-85 319.3 239 64.9
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 4.4e-85 318.5 201 75.6
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 1.3e-84 317.0 246 63.8
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 1.7e-84 316.6 240 65.8
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 7.8e-82 307.8 248 61.7
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 1.3e-81 307.0 248 63.3
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 1.1e-75 287.3 248 60.9
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 1.4e-75 287.0 248 61.7
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 1.6e-74 283.5 173 76.3
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 1.0e-73 280.8 241 61.0
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 1.6e-71 273.5 186 73.7
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 5.2e-70 268.5 148 85.8
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 5.2e-70 268.5 148 85.8
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 3.8e-68 262.3 151 80.8
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 3.2e-67 259.2 190 58.9
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.1e-64 250.8 182 69.2
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 6.2e-55 218.4 179 57.0
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 7.1e-51 204.9 173 59.0
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 1.5e-48 197.2 181 57.5
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 1.3e-47 194.1 186 55.9
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 1.3e-47 194.1 186 55.9
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 4.2e-43 179.1 110 78.2
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 1.2e-42 177.6 181 45.3
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 2.0e-37 160.2 132 55.3
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 2.6e-37 159.8 86 87.2
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 3.4e-29 132.9 73 83.6
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 5.0e-28 129.0 62 93.5
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 2.7e-26 123.2 73 78.1
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 1.3e-23 114.4 174 35.6
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 4.8e-23 112.5 75 77.3
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 3.1e-22 109.8 100 57.0
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 3.1e-22 109.8 100 57.0
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 1.2e-21 107.8 106 57.5
PRCOL_00000603 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 1.2e-21 107.8 168 35.7
DCAR_009878 Daucus carota HOM05D004292 ORTHO05D005206 7.4e-16 88.6 83 61.4
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 5.3e-14 82.4 92 53.3
arahy.Tifrunner.gnm1.ann1.B49LBP Arachis hypogaea HOM05D004292 ORTHO05D005206 1.6e-10 70.9 62 56.5
Cre03.g160850 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 4.0e-09 66.2 172 29.7
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 2.0e-08 63.9 38 76.3
MCO07G095 Micromonas commoda HOM05D004292 ORTHO05D005206 2.6e-08 63.5 165 29.1
arahy.Tifrunner.gnm1.ann1.06RDDY Arachis hypogaea HOM05D004292 ORTHO05D005206 3.3e-08 63.2 54 61.1
Os09g0411500 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 2.2e-07 60.5 46 54.3
arahy.Tifrunner.gnm1.ann1.A5SBZK Arachis hypogaea HOM05D004292 ORTHO05D005206 1.1e-06 58.2 65 46.2
PRCOL_00001474 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 4.1e-06 56.2 201 23.4


User provided reference genes

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