Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold232G43548 Striga asiatica HOM05D007265 ORTHO05D009118 2.6e-86 322.0 161 100.0
CSS0038215 Camellia sinensis var. sinensis HOM05D007265 ORTHO05D009118 4.2e-12 75.5 39 94.9
DCAR_025264 Daucus carota HOM05D007265 ORTHO05D009118 1.6e-11 73.6 39 94.9
Nitab4.5_0001763g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 1.6e-11 73.6 39 94.9
CAN.G1415.20 Capsicum annuum HOM05D007265 ORTHO05D009118 2.1e-11 73.2 39 92.3
DCAR_005402 Daucus carota HOM05D007265 ORTHO05D009118 3.6e-11 72.4 39 92.3
CiPaw.01G077600 Carya illinoinensis HOM05D007265 ORTHO05D009118 1.0e-10 70.9 36 94.4
Hma1.2p1_0390F.1_g142620 Hydrangea macrophylla HOM05D007265 ORTHO05D009118 1.0e-10 70.9 37 94.6
Nn1g00287 Nelumbo nucifera HOM05D007265 ORTHO05D009118 1.0e-10 70.9 37 94.6
Lj7E499T0 Lonicera japonica HOM05D007265 ORTHO05D009118 1.8e-10 70.1 39 89.7
GSVIVG01027169001 Vitis vinifera HOM05D007265 ORTHO05D009118 1.8e-10 70.1 39 89.7
Nitab4.5_0010712g0030 Nicotiana tabacum HOM05D007265 ORTHO05D009118 2.3e-10 69.7 38 92.1
Ciclev10023834m.g Citrus clementina HOM05D007265 ORTHO05D009118 3.9e-10 68.9 81 51.9
Duzib138G0325 Durio zibethinus HOM05D007265 ORTHO05D009118 3.9e-10 68.9 39 89.7
Gohir.A11G097900 Gossypium hirsutum HOM05D007265 ORTHO05D009118 3.9e-10 68.9 39 89.7
Gohir.D11G102600 Gossypium hirsutum HOM05D007265 ORTHO05D009118 3.9e-10 68.9 39 89.7
Nitab4.5_0000258g0270 Nicotiana tabacum HOM05D007265 ORTHO05D009118 3.9e-10 68.9 39 84.6
PGSC0003DMG400000233 Solanum tuberosum HOM05D007265 ORTHO05D009118 3.9e-10 68.9 37 91.9
Solyc01g096090.4 Solanum lycopersicum HOM05D007265 ORTHO05D009118 5.2e-10 68.6 39 89.7
Sopen01g039810 Solanum pennellii HOM05D007265 ORTHO05D009118 5.2e-10 68.6 39 89.7
Nitab4.5_0003865g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 6.7e-10 68.2 37 89.2
THA.LOC104802081 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 6.7e-10 68.2 39 87.2
MD01G1083600 Malus domestica HOM05D007265 ORTHO05D009118 8.8e-10 67.8 36 91.7
MD07G1152300 Malus domestica HOM05D007265 ORTHO05D009118 8.8e-10 67.8 36 91.7
Prupe.2G190600 Prunus persica HOM05D007265 ORTHO05D009118 8.8e-10 67.8 36 91.7
ATR0602G127 Amborella trichopoda HOM05D007265 ORTHO05D009118 1.1e-09 67.4 37 89.2
Cc02_g39560 Coffea canephora HOM05D007265 ORTHO05D009118 1.1e-09 67.4 36 91.7
RcHm_v2.0_Chr1g0360081 Rosa chinensis HOM05D000497 ORTHO05D013080 1.1e-09 67.4 42 78.6
TAR374G1528 Trochodendron aralioides HOM05D007265 ORTHO05D009118 1.1e-09 67.4 37 89.2
Oeu008708.1 Olea europaea HOM05D007265 ORTHO05D009118 1.5e-09 67.0 37 86.5
Gohir.D12G116700 Gossypium hirsutum HOM05D007265 ORTHO05D009118 2.6e-09 66.2 39 84.6
HanXRQChr03g0093001 Helianthus annuus HOM05D007265 ORTHO05D009118 2.6e-09 66.2 36 86.1
PGR042G1917 Punica granatum HOM05D007265 ORTHO05D009118 2.6e-09 66.2 39 84.6
THA.LOC104817372 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 2.6e-09 66.2 39 84.6
Atru.chr5.686 Acer truncatum HOM05D007265 ORTHO05D009118 4.4e-09 65.5 36 88.9
Os05g0542100 Oryza sativa ssp. japonica HOM05D007265 ORTHO05D009118 4.4e-09 65.5 37 81.1
PSO063G4371 Papaver somniferum HOM05D007265 ORTHO05D009118 4.4e-09 65.5 37 86.5
PSO170G4391 Papaver somniferum HOM05D007265 ORTHO05D009118 4.4e-09 65.5 37 86.5
Aqoxy5G04249 Aquilegia oxysepala HOM05D007265 ORTHO05D009118 5.7e-09 65.1 34 91.2
Thecc.01G340400 Theobroma cacao HOM05D007265 ORTHO05D009118 5.7e-09 65.1 39 84.6
Migut.N01534 Erythranthe guttata HOM05D007265 ORTHO05D009118 9.7e-09 64.3 39 79.5
Gohir.A12G113200 Gossypium hirsutum HOM05D007265 ORTHO05D009118 9.7e-09 64.3 39 82.1
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 1.3e-08 63.9 37 83.8
CARHR141880 Cardamine hirsuta HOM05D007265 ORTHO05D009118 2.2e-08 63.2 39 79.5
Duzib133G0073 Durio zibethinus HOM05D007265 ORTHO05D009118 2.8e-08 62.8 39 82.1
Hund16719 Selenicereus undatus HOM05D007265 ORTHO05D009118 2.8e-08 62.8 36 83.3
Lalb_Chr15g0076341 Lupinus albus HOM05D007265 ORTHO05D009118 4.8e-08 62.0 36 80.6
arahy.Tifrunner.gnm1.ann1.4N8QKH Arachis hypogaea HOM05D007265 ORTHO05D009118 1.1e-07 60.8 34 82.4
MELO3C022263.2 Cucumis melo HOM05D007265 ORTHO05D009118 1.1e-07 60.8 36 80.6
HanXRQChr13g0423241 Helianthus annuus HOM05D007265 ORTHO05D009118 1.1e-07 60.8 37 78.4
AL4G45970 Arabidopsis lyrata HOM05D007265 ORTHO05D009118 1.8e-07 60.1 39 76.9
AT2G46540 Arabidopsis thaliana HOM05D007265 ORTHO05D009118 1.8e-07 60.1 39 76.9
Thhalv10001742m.g Eutrema salsugineum HOM05D007265 ORTHO05D009118 1.8e-07 60.1 39 76.9
Sp4g28590 Schrenkiella parvula HOM05D007265 ORTHO05D009118 1.8e-07 60.1 39 76.9
Sed0002056 Sechium edule HOM05D007265 ORTHO05D009118 1.8e-07 60.1 36 77.8
BcaC02g12671 Brassica carinata HOM05D007265 ORTHO05D009118 2.4e-07 59.7 37 78.4
BcaC02g12679 Brassica carinata HOM05D007265 ORTHO05D009118 2.4e-07 59.7 37 78.4
C04p01380 Brassica napus HOM05D007265 ORTHO05D009118 2.4e-07 59.7 37 78.4
BolC4t21791H Brassica oleracea HOM05D007265 ORTHO05D009118 2.4e-07 59.7 37 78.4
BraA05t19124Z Brassica rapa HOM05D007265 ORTHO05D009118 2.4e-07 59.7 37 78.4
Carub.0004s2926 Capsella rubella HOM05D007265 ORTHO05D009118 2.4e-07 59.7 37 78.4
Ca_09518_v3 Cicer arietinum L. HOM05D007265 ORTHO05D009118 2.4e-07 59.7 48 60.4
HanXRQChr16g0521331 Helianthus annuus HOM05D007265 ORTHO05D009118 2.4e-07 59.7 37 78.4
CsaV3_6G008500 Cucumis sativus L. HOM05D007265 ORTHO05D009118 3.1e-07 59.3 36 77.8
Glyma.03G258500 Glycine max HOM05D007265 ORTHO05D009118 4.1e-07 58.9 36 75.0
Glyma.19G257100 Glycine max HOM05D007265 ORTHO05D009118 4.1e-07 58.9 36 75.0
Phvul.006G114500 Phaseolus vulgaris HOM05D007265 ORTHO05D009118 4.1e-07 58.9 36 75.0
BcaC02g07039 Brassica carinata HOM05D007265 ORTHO05D009118 5.3e-07 58.5 62 56.5
CANSAT56G3703 Cannabis sativa HOM05D007265 ORTHO05D009118 5.3e-07 58.5 36 72.2
Potri.002G173101 Populus trichocarpa HOM05D007265 ORTHO05D009118 5.3e-07 58.5 41 73.2
Sabra02G0140200 Salix brachista HOM05D007265 ORTHO05D009118 5.3e-07 58.5 41 73.2
Lalb_Chr18g0044541 Lupinus albus HOM05D007265 ORTHO05D009118 9.1e-07 57.8 36 75.0
Rhsim01G0174400 Rhododendron simsii HOM05D007265 ORTHO05D009118 9.1e-07 57.8 60 56.7
BcaC02g07016 Brassica carinata HOM05D007265 ORTHO05D009118 1.2e-06 57.4 39 74.4
arahy.Tifrunner.gnm1.ann1.PH1UFL Arachis hypogaea HOM05D007265 ORTHO05D009118 1.6e-06 57.0 33 81.8
A04p34450 Brassica napus HOM05D007265 ORTHO05D009118 1.6e-06 57.0 62 54.8
Lj1g0009143 Lotus japonicus HOM05D007265 ORTHO05D009118 1.6e-06 57.0 36 72.2
Medtr7g117700 Medicago truncatula HOM05D007265 ORTHO05D009118 4.5e-06 55.5 36 69.4
BraA04t18903Z Brassica rapa HOM05D007265 ORTHO05D009118 5.9e-06 55.1 62 53.2


User provided reference genes

Program Settings