Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold232G43518 Striga asiatica HOM05D006558 ORTHO05D008424 0.0e+00 1406.3 705 100.0
Oeu006113.1 Olea europaea HOM05D006558 ORTHO05D008424 3.2e-237 825.5 700 60.4
Cc07_g20890 Coffea canephora HOM05D006558 ORTHO05D008424 7.8e-228 794.3 712 56.9
Actinidia06260 Actinidia chinensis HOM05D006558 ORTHO05D008424 1.7e-222 776.5 709 57.3
QL04p014186 Quercus lobata HOM05D006558 ORTHO05D008424 1.2e-215 753.8 712 53.9
Peaxi162Scf00516g00328 Petunia axillaris HOM05D006558 ORTHO05D008424 2.3e-211 739.6 700 54.4
Sopen03g028230 Solanum pennellii HOM05D006558 ORTHO05D008424 5.1e-211 738.4 705 54.2
Solyc03g097460.3 Solanum lycopersicum HOM05D006558 ORTHO05D008424 8.6e-211 737.6 703 54.3
TAR633G1807 Trochodendron aralioides HOM05D006558 ORTHO05D008424 8.6e-211 737.6 715 53.0
CiPaw.13G011700 Carya illinoinensis HOM05D006558 ORTHO05D008424 4.3e-210 735.3 706 53.8
Gorai.010G217100 Gossypium raimondii HOM05D006558 ORTHO05D008424 2.8e-209 732.6 709 53.5
Manes.12G022900 Manihot esculenta HOM05D006558 ORTHO05D008424 3.6e-209 732.3 709 51.5
Gohir.D06G185500 Gossypium hirsutum HOM05D006558 ORTHO05D008424 8.1e-209 731.1 708 53.2
Ciclev10033512m.g Citrus clementina HOM05D006558 ORTHO05D008424 2.4e-208 729.6 707 53.7
FvH4_7g02620 Fragaria vesca HOM05D006558 ORTHO05D008424 3.1e-208 729.2 712 52.5
RcHm_v2.0_Chr1g0321321 Rosa chinensis HOM05D006558 ORTHO05D008424 2.6e-207 726.1 712 52.7
FAN01G2130 Fragaria x ananassa HOM05D006558 ORTHO05D008424 7.6e-207 724.5 730 51.9
Duzib106G1800 Durio zibethinus HOM05D006558 ORTHO05D008424 4.9e-206 721.8 686 54.2
FAN03G0498 Fragaria x ananassa HOM05D006558 ORTHO05D008424 4.9e-206 721.8 730 51.8
TWI15G0624 Tripterygium wilfordii HOM05D006558 ORTHO05D008424 8.4e-206 721.1 714 52.1
Prupe.2G031500 Prunus persica HOM05D006558 ORTHO05D008424 1.1e-205 720.7 714 52.1
GSVIVG01000827001 Vitis vinifera HOM05D006558 ORTHO05D008424 1.5e-202 710.3 710 52.5
Lj9C648T3 Lonicera japonica HOM05D006558 ORTHO05D008424 4.3e-202 708.8 675 53.9
Rhsim07G0065000 Rhododendron simsii HOM05D006558 ORTHO05D008424 2.8e-201 706.1 764 49.9
Nitab4.5_0002530g0080 Nicotiana tabacum HOM05D006558 ORTHO05D008424 4.0e-200 702.2 704 53.1
CAN.G732.14 Capsicum annuum HOM05D006558 ORTHO05D008424 1.7e-198 696.8 703 52.2
Aqoxy2G03825 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 8.4e-198 694.5 712 49.9
Phvul.002G285400 Phaseolus vulgaris HOM05D006558 ORTHO05D008424 2.4e-197 693.0 705 50.8
Potri.004G236000 Populus trichocarpa HOM05D006558 ORTHO05D008424 4.2e-197 692.2 704 52.4
Nitab4.5_0000021g1060 Nicotiana tabacum HOM05D006558 ORTHO05D008424 1.2e-196 690.6 744 50.4
HanXRQChr02g0050141 Helianthus annuus HOM05D006558 ORTHO05D008424 2.7e-196 689.5 703 51.4
Aqoxy5G01848 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 7.9e-196 688.0 709 49.8
Nn7g37154 Nelumbo nucifera HOM05D006558 ORTHO05D008424 3.9e-195 685.6 721 49.7
Ca_25408_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 1.1e-194 684.1 701 50.8
Sc11g0006630 Simmondsia chinensis HOM05D006558 ORTHO05D008424 3.3e-194 682.6 707 51.3
Migut.K00935 Erythranthe guttata HOM05D006558 ORTHO05D008424 5.6e-194 681.8 615 59.7
CANSAT78G0292 Cannabis sativa HOM05D006558 ORTHO05D008424 1.3e-193 680.6 703 51.2
Psat5g217480 Pisum sativum HOM05D006558 ORTHO05D008424 1.3e-193 680.6 705 50.1
Glyma.11G153500 Glycine max HOM05D006558 ORTHO05D008424 1.6e-193 680.2 706 50.8
Lalb_Chr25g0282291 Lupinus albus HOM05D006558 ORTHO05D008424 2.8e-193 679.5 704 50.9
ECA248G1764 Erigeron canadensis HOM05D006558 ORTHO05D008424 3.6e-193 679.1 707 50.2
TPR.G9868 Trifolium pratense HOM05D006558 ORTHO05D008424 2.4e-192 676.4 700 50.3
VMungo0251G1905 Vigna mungo HOM05D006558 ORTHO05D008424 2.4e-192 676.4 709 50.1
CANSAT78G2064 Cannabis sativa HOM05D006558 ORTHO05D008424 3.1e-192 676.0 703 51.2
Lj3g0026268 Lotus japonicus HOM05D006558 ORTHO05D008424 3.4e-191 672.5 714 49.6
AUR62037214 Chenopodium quinoa HOM05D006558 ORTHO05D008424 1.7e-190 670.2 704 50.0
AUR62026839 Chenopodium quinoa HOM05D006558 ORTHO05D008424 4.9e-190 668.7 706 50.0
EL10Ac2g02834 Beta vulgaris HOM05D006558 ORTHO05D009340 7.1e-189 664.8 703 48.9
MBI13_g29518_MAGBIO Magnolia biondii HOM05D006558 ORTHO05D008424 1.6e-185 653.7 716 48.5
AL3G18860 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 6.9e-184 648.3 708 48.2
PGR031G1286 Punica granatum HOM05D006558 ORTHO05D008424 1.5e-183 647.1 713 48.1
Sp3g06440 Schrenkiella parvula HOM05D006558 ORTHO05D008424 2.2e-182 643.3 709 47.2
THA.LOC104826716 Tarenaya hassleriana HOM05D006558 ORTHO05D008424 4.9e-182 642.1 713 49.1
CsaV3_5G011280 Cucumis sativus L. HOM05D006558 ORTHO05D008424 1.2e-180 637.5 706 48.0
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 2.1e-180 636.7 709 47.7
AT3G07530 Arabidopsis thaliana HOM05D006558 ORTHO05D008424 1.3e-179 634.0 706 47.5
Dinv00935 Davidia involucrata HOM05D006558 ORTHO05D008424 6.7e-179 631.7 593 55.5
Thhalv10020176m.g Eutrema salsugineum HOM05D006558 ORTHO05D008424 8.7e-179 631.3 709 47.1
Sed0005595 Sechium edule HOM05D006558 ORTHO05D008424 4.3e-178 629.0 704 47.4
DCAR_010372 Daucus carota HOM05D006558 ORTHO05D008424 2.1e-177 626.7 519 58.0
MELO3C016629.2 Cucumis melo HOM05D006558 ORTHO05D008424 1.1e-176 624.4 705 47.7
Lsat_1_v5_gn_1_114420 Lactuca sativa HOM05D006558 ORTHO05D008424 1.4e-176 624.0 702 47.9
Aa31LG10G8390 Aethionema arabicum HOM05D006558 ORTHO05D008424 5.3e-176 622.1 712 46.2
Ca_25460_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 1.0e-174 617.8 641 50.9
Haze_03062 Corylus avellana HOM05D006558 ORTHO05D008424 5.7e-170 602.1 616 51.1
BolC5t34633H Brassica oleracea HOM05D006558 ORTHO05D008424 2.8e-169 599.7 719 45.6
BraA05t22799Z Brassica rapa HOM05D006558 ORTHO05D008424 2.8e-169 599.7 722 44.6
BcaC05g29545 Brassica carinata HOM05D006558 ORTHO05D008424 2.4e-168 596.7 710 45.6
Carub.0003s0708 Capsella rubella HOM05D006558 ORTHO05D008424 1.3e-166 590.9 713 45.0
arahy.Tifrunner.gnm1.ann1.898F3G Arachis hypogaea HOM05D006558 ORTHO05D008424 2.5e-165 586.6 701 45.4
Ah.10g030940 Amaranthus hybridus HOM05D006558 ORTHO05D008424 1.4e-163 580.9 613 49.1
unitig_32.g11142 Utricularia gibba HOM05D006558 ORTHO05D008424 1.4e-163 580.9 624 50.3
C05p59790 Brassica napus HOM05D006558 ORTHO05D008424 1.8e-163 580.5 692 45.5
A05p40680 Brassica napus HOM05D006558 ORTHO05D008424 5.1e-163 578.9 692 45.5
Psat5g217880 Pisum sativum HOM05D006558 ORTHO05D008424 4.4e-162 575.9 519 54.7
HPP92_012099 Vanilla planifolia HOM05D006558 ORTHO05D008424 3.2e-157 559.7 711 42.9
PSO675G8563 Papaver somniferum HOM05D006558 ORTHO05D008424 7.9e-156 555.1 712 43.1
Dinv09252 Davidia involucrata HOM05D006558 ORTHO05D008424 5.7e-154 548.9 537 54.6
Atru.chr11.2434 Acer truncatum HOM05D006558 ORTHO05D008424 1.7e-153 547.4 466 56.4
CARHR082190 Cardamine hirsuta HOM05D006558 ORTHO05D008424 2.3e-147 526.9 521 50.5
Thecc.10G170400 Theobroma cacao HOM05D006558 ORTHO05D008424 1.0e-142 511.5 457 56.5
Cpa.g.sc96.50 Carica papaya HOM05D006558 ORTHO05D008424 6.8e-139 498.8 452 55.1
PGSC0003DMG400031735 Solanum tuberosum HOM05D006558 ORTHO05D008424 2.6e-138 496.9 491 53.2
MD00G1214500 Malus domestica HOM05D006558 ORTHO05D008424 4.1e-136 489.6 396 59.1
vmacro13739 Vaccinium macrocarpon HOM05D006558 ORTHO05D008424 1.2e-132 478.0 478 54.2
arahy.Tifrunner.gnm1.ann1.S73JQ5 Arachis hypogaea HOM05D006558 ORTHO05D008424 8.3e-129 465.3 551 45.4
Sabra01G0180400 Salix brachista HOM05D006558 ORTHO05D008424 5.0e-126 456.1 454 53.5
Hund15718 Selenicereus undatus HOM05D006558 ORTHO05D008424 4.6e-119 433.0 643 41.1
Medtr3g019010 Medicago truncatula HOM05D006558 ORTHO05D008424 5.0e-118 429.5 530 45.5
Gohir.A06G175900 Gossypium hirsutum HOM05D006558 ORTHO05D008424 1.0e-110 405.2 433 49.9
ATR1093G023 Amborella trichopoda HOM05D006558 ORTHO05D008424 4.0e-107 393.3 544 40.8
Zm00001eb143980 Zea mays HOM05D006558 ORTHO05D008424 1.1e-96 358.6 492 42.5
AL908U10010 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 1.0e-94 352.1 378 48.7
CDE05G1491 Ceratophyllum demersum HOM05D006558 ORTHO05D008424 1.2e-90 338.6 665 34.9
Mapoly0001s0524 Marchantia polymorpha HOM05D006558 ORTHO05D008424 4.9e-89 333.2 845 30.2
AagrBONN_evm.TU.Sc2ySwM_228.965 Anthoceros agrestis HOM05D006558 ORTHO05D008424 1.8e-78 298.1 777 28.2
Pp3c9_4730 Physcomitrium patens HOM05D006558 ORTHO05D008424 3.9e-78 297.0 831 28.3
Gohir.A06G175902 Gossypium hirsutum HOM05D006558 ORTHO05D008424 4.0e-75 287.0 241 59.3
SMO229G0006 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 9.0e-75 285.8 708 29.1
SMO144G0043 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 2.0e-74 284.6 708 29.0
COL.COLO4_35437 Corchorus olitorius HOM05D006558 ORTHO05D008424 1.4e-72 278.5 594 31.8
Eucgr.H05132 Eucalyptus grandis HOM05D006558 ORTHO05D008424 2.4e-67 261.2 706 29.7
SEGI_06522 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 3.1e-67 260.8 378 41.8
Atru.chr11.2476 Acer truncatum HOM05D006558 ORTHO05D008424 7.1e-64 249.6 192 62.0
MD07G1035100 Malus domestica HOM05D006558 ORTHO05D008424 4.3e-61 240.4 213 55.9
SGA_v2.0_scaffold2G00943 Striga asiatica HOM05D006558 ORTHO05D008424 1.7e-52 211.8 259 53.7
SEGI_00327 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 2.0e-42 178.3 167 51.5
Eucgr.H05138 Eucalyptus grandis HOM05D006558 ORTHO05D008424 3.4e-42 177.6 317 36.3
Cc02_g29630 Coffea canephora HOM05D006558 ORTHO05D008424 2.9e-41 174.5 129 63.6
Cpa.g.sc96.48 Carica papaya HOM05D006558 ORTHO05D008424 1.4e-38 165.6 214 43.5
Eucgr.H05129 Eucalyptus grandis HOM05D006558 ORTHO05D008424 5.9e-34 150.2 152 50.0
CBR_g72661 Chara braunii HOM05D000019 ORTHO05D000353 6.5e-33 146.7 308 30.8
Atru.chr11.2433 Acer truncatum HOM05D006558 ORTHO05D008424 2.0e-29 135.2 145 52.4
Medtr3g019025 Medicago truncatula HOM05D006558 ORTHO05D008424 9.1e-27 126.3 95 60.0
Os03g0243200 Oryza sativa ssp. japonica HOM05D006558 ORTHO05D008424 4.5e-26 124.0 187 39.6
SEGI_36037 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 1.2e-23 115.9 246 32.9
DCAR_010374 Daucus carota HOM05D006558 ORTHO05D008424 5.2e-22 110.5 201 35.3
MD00G1214400 Malus domestica HOM05D006558 ORTHO05D008424 2.2e-20 105.1 109 49.5
Ca_02010_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 6.8e-14 83.6 59 55.9
CAN.G261.15 Capsicum annuum HOM05D003152 ORTHO05D034019 8.9e-14 83.2 80 53.8
Medtr3g019030 Medicago truncatula HOM05D006558 ORTHO05D034019 3.4e-13 81.3 43 74.4
MD07G1035200 Malus domestica HOM05D006558 ORTHO05D008424 7.8e-10 70.1 131 33.6
Solyc05g150129.1 Solanum lycopersicum HOM05D006558 ORTHO05D008424 1.6e-07 62.4 48 54.2
Rhsim12G0031700 Rhododendron simsii HOM05D000017 ORTHO05D000013 3.6e-07 61.2 47 66.0
Nn7g37167 Nelumbo nucifera HOM05D006558 ORTHO05D008424 4.7e-07 60.8 47 55.3
MBI08_g18916_MAGBIO Magnolia biondii HOM05D000017 ORTHO05D000013 1.4e-06 59.3 57 49.1
Sopen05g017900 Solanum pennellii HOM05D028470 ORTHO05D037706 1.4e-06 59.3 79 38.0


User provided reference genes

Program Settings