Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold232G43489 Striga asiatica HOM05D005138 ORTHO05D006318 2.6e-68 261.9 133 100.0
SGA_v2.0_scaffold43G16284 Striga asiatica HOM05D005138 ORTHO05D006318 2.3e-64 248.8 133 94.7
Migut.N01855 Erythranthe guttata HOM05D005138 ORTHO05D006318 1.1e-55 219.9 133 83.5
Gorai.011G218700 Gossypium raimondii HOM05D005138 ORTHO05D006318 5.3e-53 211.1 133 78.2
Duzib128G1035 Durio zibethinus HOM05D005138 ORTHO05D006318 6.9e-53 210.7 133 78.2
Gohir.D10G195900 Gossypium hirsutum HOM05D005138 ORTHO05D006318 6.9e-53 210.7 133 78.2
PGR044G2178 Punica granatum HOM05D005138 ORTHO05D006318 9.1e-53 210.3 133 78.9
Gohir.A10G188000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 1.2e-52 209.9 133 77.4
Ciclev10002826m.g Citrus clementina HOM05D005138 ORTHO05D006318 2.0e-52 209.1 133 75.9
CiPaw.14G008900 Carya illinoinensis HOM05D005138 ORTHO05D006318 4.5e-52 208.0 133 76.7
Duzib114G0920 Durio zibethinus HOM05D005138 ORTHO05D006318 7.7e-52 207.2 133 75.9
unitig_899.g15579 Utricularia gibba HOM05D005138 ORTHO05D006318 7.7e-52 207.2 133 79.7
CiPaw.13G015300 Carya illinoinensis HOM05D005138 ORTHO05D006318 5.0e-51 204.5 131 75.6
Manes.11G007200 Manihot esculenta HOM05D005138 ORTHO05D006318 1.1e-50 203.4 133 74.4
FAN03G2670 Fragaria x ananassa HOM05D005138 ORTHO05D006318 1.9e-50 202.6 133 73.7
FAN06G4838 Fragaria x ananassa HOM05D005138 ORTHO05D006318 1.9e-50 202.6 133 73.7
Thecc.10G149000 Theobroma cacao HOM05D005138 ORTHO05D006318 1.9e-50 202.6 133 74.4
MD07G1047200 Malus domestica HOM05D005138 ORTHO05D006318 2.5e-50 202.2 133 75.2
Sed0002262 Sechium edule HOM05D005138 ORTHO05D006318 4.2e-50 201.4 133 72.9
Hma1.2p1_0837F.1_g226140 Hydrangea macrophylla HOM05D005138 ORTHO05D006318 7.2e-50 200.7 133 73.7
Prupe.2G041500 Prunus persica HOM05D005138 ORTHO05D006318 7.2e-50 200.7 133 73.7
RcHm_v2.0_Chr1g0325871 Rosa chinensis HOM05D005138 ORTHO05D006318 7.2e-50 200.7 133 72.2
Manes.04G157100 Manihot esculenta HOM05D005138 ORTHO05D006318 9.4e-50 200.3 133 72.9
Actinidia34769 Actinidia chinensis HOM05D005138 ORTHO05D006318 2.1e-49 199.1 129 76.0
DCAR_029715 Daucus carota HOM05D005138 ORTHO05D006318 2.1e-49 199.1 133 72.2
MSTRG.5074 Avicennia marina HOM05D005138 ORTHO05D006318 3.6e-49 198.4 133 75.2
Cpa.g.sc169.49 Carica papaya HOM05D005138 ORTHO05D006318 4.7e-49 198.0 133 72.9
FvH4_7g03540 Fragaria vesca HOM05D005138 ORTHO05D006318 4.7e-49 198.0 133 72.2
FAN10G0593 Fragaria x ananassa HOM05D005138 ORTHO05D006318 6.1e-49 197.6 133 72.2
FAN10G2449 Fragaria x ananassa HOM05D005138 ORTHO05D006318 6.1e-49 197.6 133 72.2
MELO3C012486.2 Cucumis melo HOM05D005138 ORTHO05D006318 7.9e-49 197.2 141 70.9
MD02G1279300 Malus domestica HOM05D005138 ORTHO05D006318 1.0e-48 196.8 133 72.9
vmacro10390 Vaccinium macrocarpon HOM05D005138 ORTHO05D006318 1.4e-48 196.4 133 70.7
Zm00001eb001400 Zea mays HOM05D005138 ORTHO05D006318 1.4e-48 196.4 133 71.4
CSS0020361 Camellia sinensis var. sinensis HOM05D005138 ORTHO05D006318 1.8e-48 196.1 126 75.4
Haze_03004 Corylus avellana HOM05D005138 ORTHO05D006318 1.8e-48 196.1 131 71.8
CsaV3_5G036890 Cucumis sativus L. HOM05D005138 ORTHO05D006318 1.8e-48 196.1 128 75.0
TWI74G0500 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 1.8e-48 196.1 133 71.4
Cfa010943 Carpinus fangiana HOM05D005138 ORTHO05D006318 2.3e-48 195.7 131 71.0
Sc10g0004520 Simmondsia chinensis HOM05D005138 ORTHO05D006318 3.0e-48 195.3 126 74.6
Os07g0640100 Oryza sativa ssp. japonica HOM05D005138 ORTHO05D006318 3.9e-48 194.9 131 72.5
CANSAT56G0322 Cannabis sativa HOM05D005138 ORTHO05D006318 5.1e-48 194.5 133 71.4
Eucgr.G03216 Eucalyptus grandis HOM05D005138 ORTHO05D006318 8.8e-48 193.7 133 72.2
QL04p018722 Quercus lobata HOM05D005138 ORTHO05D006318 8.8e-48 193.7 132 71.2
TAR362G0697 Trochodendron aralioides HOM05D005138 ORTHO05D006318 1.1e-47 193.4 133 72.2
Atru.chr12.1279 Acer truncatum HOM05D005138 ORTHO05D006318 1.5e-47 193.0 133 68.4
CDE04G1620 Ceratophyllum demersum HOM05D005138 ORTHO05D006318 1.5e-47 193.0 133 71.4
PSO384G1335 Papaver somniferum HOM05D005138 ORTHO05D006318 2.0e-47 192.6 133 69.2
arahy.Tifrunner.gnm1.ann1.K7P4IE Arachis hypogaea HOM05D005138 ORTHO05D006318 2.6e-47 192.2 131 70.2
Cc07_g21240 Coffea canephora HOM05D005138 ORTHO05D006318 2.6e-47 192.2 131 70.2
HanXRQChr11g0341771 Helianthus annuus HOM05D005138 ORTHO05D006318 2.6e-47 192.2 126 73.0
PSO135G0826 Papaver somniferum HOM05D005138 ORTHO05D006318 2.6e-47 192.2 133 69.2
SalBow5G1163 Salvia bowleyana HOM05D005138 ORTHO05D006318 4.4e-47 191.4 172 60.5
Dinv44706 Davidia involucrata HOM05D005138 ORTHO05D006318 5.7e-47 191.0 131 70.2
THA.LOC104826756 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 7.4e-47 190.7 132 68.2
arahy.Tifrunner.gnm1.ann1.EVE7SV Arachis hypogaea HOM05D005138 ORTHO05D006318 9.7e-47 190.3 131 69.5
Lsat_1_v5_gn_1_116501 Lactuca sativa HOM05D005138 ORTHO05D006318 9.7e-47 190.3 124 72.6
ATR1096G082 Amborella trichopoda HOM05D005138 ORTHO05D006318 1.7e-46 189.5 131 69.5
TWI38G0338 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 2.2e-46 189.1 132 66.7
PGSC0003DMG400004276 Solanum tuberosum HOM05D005138 ORTHO05D006318 2.8e-46 188.7 133 67.7
MBI13_g09225_MAGBIO Magnolia biondii HOM05D005138 ORTHO05D006318 4.8e-46 188.0 133 70.7
Nitab4.5_0010402g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 6.3e-46 187.6 131 68.7
AUR62031745 Chenopodium quinoa HOM05D005138 ORTHO05D006318 1.4e-45 186.4 125 71.2
AUR62032630 Chenopodium quinoa HOM05D005138 ORTHO05D006318 1.4e-45 186.4 125 71.2
Ca_23972_v3 Cicer arietinum L. HOM05D005138 ORTHO05D006318 2.4e-45 185.7 132 68.9
Hund13385 Selenicereus undatus HOM05D005138 ORTHO05D006318 2.4e-45 185.7 125 72.0
HPP92_021197 Vanilla planifolia HOM05D005138 ORTHO05D006318 2.4e-45 185.7 136 69.1
Aa31LG3G6480 Aethionema arabicum HOM05D005138 ORTHO05D006318 4.1e-45 184.9 130 70.8
BcaB04g18689 Brassica carinata HOM05D005138 ORTHO05D006318 5.3e-45 184.5 130 70.0
THA.LOC104799320 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 5.3e-45 184.5 132 67.4
Ah.10g030100 Amaranthus hybridus HOM05D005138 ORTHO05D006318 7.0e-45 184.1 125 72.0
Nitab4.5_0004389g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 7.0e-45 184.1 158 60.1
Ah.12g059980 Amaranthus hybridus HOM05D005138 ORTHO05D006318 1.2e-44 183.3 125 73.6
BcaC09g48226 Brassica carinata HOM05D005138 ORTHO05D006318 1.2e-44 183.3 130 69.2
A03p37550 Brassica napus HOM05D005138 ORTHO05D006318 1.2e-44 183.3 130 69.2
C01p53060 Brassica napus HOM05D005138 ORTHO05D006318 1.2e-44 183.3 130 69.2
C03p45540 Brassica napus HOM05D005138 ORTHO05D006318 1.2e-44 183.3 130 69.2
Thhalv10021751m.g Eutrema salsugineum HOM05D005138 ORTHO05D006318 1.5e-44 183.0 130 67.7
Medtr8g040150 Medicago truncatula HOM05D005138 ORTHO05D006318 2.0e-44 182.6 132 65.9
EL10Ac2g02769 Beta vulgaris HOM05D005138 ORTHO05D000392 2.6e-44 182.2 123 69.9
Psat4g099920 Pisum sativum HOM05D005138 ORTHO05D006318 3.5e-44 181.8 132 65.9
CARHR086810 Cardamine hirsuta HOM05D005138 ORTHO05D006318 4.5e-44 181.4 130 67.7
Sp3g10480 Schrenkiella parvula HOM05D005138 ORTHO05D006318 4.5e-44 181.4 130 67.7
Solyc01g022750.3 Solanum lycopersicum HOM05D005138 ORTHO05D006318 5.9e-44 181.0 131 65.6
Sopen01g016660 Solanum pennellii HOM05D005138 ORTHO05D006318 5.9e-44 181.0 131 65.6
AL3G23920 Arabidopsis lyrata HOM05D005138 ORTHO05D006318 7.7e-44 180.6 130 66.9
Aqoxy2G00421 Aquilegia oxysepala HOM05D005138 ORTHO05D006318 1.0e-43 180.3 131 68.7
Hund15745 Selenicereus undatus HOM05D005138 ORTHO05D006318 1.0e-43 180.3 133 68.4
Carub.0003s1162 Capsella rubella HOM05D005138 ORTHO05D006318 1.3e-43 179.9 130 66.9
Sabra01G0021400 Salix brachista HOM05D005138 ORTHO05D006318 1.7e-43 179.5 132 65.2
AT3G12260 Arabidopsis thaliana HOM05D005138 ORTHO05D006318 2.9e-43 178.7 129 66.7
CAN.G1362.7 Capsicum annuum HOM05D005138 ORTHO05D006318 2.9e-43 178.7 127 68.5
TPR.G8538 Trifolium pratense HOM05D005138 ORTHO05D006318 3.8e-43 178.3 132 65.2
BolC3t16831H Brassica oleracea HOM05D005138 ORTHO05D006318 1.1e-42 176.8 139 65.5
Potri.001G029900 Populus trichocarpa HOM05D005138 ORTHO05D006318 1.1e-42 176.8 132 64.4
Lalb_Chr03g0032141 Lupinus albus HOM05D005138 ORTHO05D006318 1.9e-42 176.0 135 67.4
BraA03t12909Z Brassica rapa HOM05D005138 ORTHO05D006318 3.2e-42 175.3 140 64.3
VMungo1127G1184 Vigna mungo HOM05D005138 ORTHO05D006318 3.2e-42 175.3 133 63.9
C05p55530 Brassica napus HOM05D005138 ORTHO05D006318 5.5e-42 174.5 139 63.3
BolC1t05249H Brassica oleracea HOM05D005138 ORTHO05D006318 7.2e-42 174.1 143 62.9
BolC5t34219H Brassica oleracea HOM05D005138 ORTHO05D006318 1.6e-41 172.9 139 62.6
Glyma.15G231900 Glycine max HOM05D005138 ORTHO05D006318 1.6e-41 172.9 131 64.1
A05p37100 Brassica napus HOM05D005138 ORTHO05D006318 2.7e-41 172.2 137 62.8
BraA05t22507Z Brassica rapa HOM05D005138 ORTHO05D006318 2.7e-41 172.2 137 62.8
Lj3g0022103 Lotus japonicus HOM05D005138 ORTHO05D006318 4.7e-41 171.4 134 64.2
Aqoxy2G00420 Aquilegia oxysepala HOM05D000001 ORTHO05D007291 1.0e-40 170.2 129 66.7
Phvul.011G203300 Phaseolus vulgaris HOM05D005138 ORTHO05D006318 1.0e-40 170.2 133 63.2
Glyma.09G091002 Glycine max HOM05D005138 ORTHO05D006318 5.2e-40 167.9 131 62.6
Glyma.13G193600 Glycine max HOM05D005138 ORTHO05D006318 6.7e-40 167.5 131 62.6
Peaxi162Scf00062g02216 Petunia axillaris HOM05D005138 ORTHO05D006318 6.7e-40 167.5 133 64.7
Nitab4.5_0000254g0180 Nicotiana tabacum HOM05D005138 ORTHO05D006318 5.3e-37 157.9 131 61.1
ECA248G2587 Erigeron canadensis HOM05D005138 ORTHO05D006318 9.4e-34 147.1 97 74.2
Peaxi162Scf01042g00115 Petunia axillaris HOM05D005138 ORTHO05D006318 1.2e-33 146.7 131 57.3
GSVIVG01036643001 Vitis vinifera HOM05D005138 ORTHO05D006318 8.0e-33 144.1 95 73.7
Mapoly0055s0110 Marchantia polymorpha HOM05D005138 ORTHO05D006318 1.5e-31 139.8 123 55.3
Actinidia38920 Actinidia chinensis HOM05D005138 ORTHO05D006318 2.6e-31 139.0 127 59.8
Pp3c1_37620 Physcomitrium patens HOM05D005138 ORTHO05D006318 1.8e-29 132.9 136 52.2
Pp3c2_3180 Physcomitrium patens HOM05D005138 ORTHO05D006318 1.8e-29 132.9 136 52.2
PGSC0003DMG400005271 Solanum tuberosum HOM05D005138 ORTHO05D006318 2.4e-29 132.5 93 67.7
CBR_g52457 Chara braunii HOM05D005138 ORTHO05D006318 1.7e-27 126.3 125 49.6
ClCG00G004230 Citrullus lanatus HOM05D005138 ORTHO05D006318 3.4e-23 112.1 68 77.9
ClCG05G026940 Citrullus lanatus HOM05D005138 ORTHO05D006318 3.4e-23 112.1 68 77.9
COL.COLO4_20705 Corchorus olitorius HOM05D005138 ORTHO05D006318 8.3e-22 107.5 62 79.0
Gorai.004G120800 Gossypium raimondii HOM05D005138 ORTHO05D006318 1.2e-20 103.6 75 70.7
COL.COLO4_20706 Corchorus olitorius HOM05D005138 ORTHO05D006318 2.7e-20 102.4 71 71.8
Nn7g36804 Nelumbo nucifera HOM05D005138 ORTHO05D006318 2.7e-20 102.4 65 76.9
MD07G1046900 Malus domestica HOM05D005138 ORTHO05D006318 3.5e-20 102.1 62 75.8
ClCG05G026950 Citrullus lanatus HOM05D005138 ORTHO05D006318 5.9e-20 101.3 76 67.1
Gohir.A10G188200 Gossypium hirsutum HOM05D005138 ORTHO05D006318 1.0e-19 100.5 75 69.3
Rhsim09G0131900 Rhododendron simsii HOM05D005138 ORTHO05D006318 1.7e-19 99.8 72 66.7
Lj2A602G38 Lonicera japonica HOM05D005138 ORTHO05D006318 2.9e-19 99.0 71 64.8
SMO364G0517 Selaginella moellendorffii HOM05D005138 ORTHO05D006318 2.9e-19 99.0 118 40.7
Gohir.D03G123000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 6.6e-19 97.8 71 70.4
CAN.G575.4 Capsicum annuum HOM05D005138 ORTHO05D006318 2.5e-18 95.9 77 59.7
BcaC01g04057 Brassica carinata HOM05D005138 ORTHO05D006318 5.5e-18 94.7 69 66.7
PGSC0003DMG401025557 Solanum tuberosum HOM05D005138 ORTHO05D006318 5.5e-18 94.7 72 62.5
RcHm_v2.0_Chr1g0325941 Rosa chinensis HOM05D005138 ORTHO05D006318 1.2e-17 93.6 69 66.7
Lalb_Chr19g0132971 Lupinus albus HOM05D005138 ORTHO05D006318 1.4e-16 90.1 76 61.8
Lalb_Chr19g0132981 Lupinus albus HOM05D005138 ORTHO05D006318 1.5e-15 86.7 64 65.6
Oeu064133.1 Olea europaea HOM05D005138 ORTHO05D006318 7.5e-15 84.3 53 77.4
MCO10G366 Micromonas commoda HOM05D005138 ORTHO05D006318 1.0e-11 73.9 116 33.6
AUR62042115 Chenopodium quinoa HOM05D005138 ORTHO05D006318 1.7e-11 73.2 50 68.0
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 7.3e-10 67.8 77 48.1
SEGI_36145 Sequoiadendron giganteum HOM05D005138 ORTHO05D006318 7.3e-10 67.8 74 45.9
VMungo0464G2031 Vigna mungo HOM05D005138 ORTHO05D011906 2.1e-09 66.2 58 53.4
Cre12.g555250 Chlamydomonas reinhardtii HOM05D005138 ORTHO05D006318 1.2e-07 60.5 128 27.3
PGSC0003DMG400003395 Solanum tuberosum HOM05D005138 ORTHO05D006318 3.7e-06 55.5 53 49.1


User provided reference genes

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