Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold232G43477 Striga asiatica HOM05D002553 ORTHO05D002767 6.1e-103 377.5 190 100.0
SGA_v2.0_scaffold43G16279 Striga asiatica HOM05D002553 ORTHO05D002767 8.1e-79 297.4 179 86.0
THA.LOC104802808 Tarenaya hassleriana HOM05D002553 ORTHO05D002767 6.6e-73 277.7 181 77.9
Nitab4.5_0004271g0010 Nicotiana tabacum HOM05D002553 ORTHO05D002767 1.1e-72 276.9 181 78.5
Peaxi162Scf00434g00216 Petunia axillaris HOM05D002553 ORTHO05D002767 1.9e-72 276.2 181 77.9
AL3G15610 Arabidopsis lyrata HOM05D002553 ORTHO05D002767 2.5e-72 275.8 179 78.8
AT5G27410 Arabidopsis thaliana HOM05D002553 ORTHO05D002767 3.3e-72 275.4 179 77.7
Thecc.05G308000 Theobroma cacao HOM05D002553 ORTHO05D002767 3.3e-72 275.4 181 79.0
AT3G05190 Arabidopsis thaliana HOM05D002553 ORTHO05D002767 4.3e-72 275.0 179 78.8
PGR083G1620 Punica granatum HOM05D002553 ORTHO05D002767 4.3e-72 275.0 181 76.8
Lj9C682T7 Lonicera japonica HOM05D002553 ORTHO05D002767 7.3e-72 274.2 181 77.3
Prupe.6G330000 Prunus persica HOM05D002553 ORTHO05D002767 7.3e-72 274.2 177 79.1
RcHm_v2.0_Chr3g0454121 Rosa chinensis HOM05D002553 ORTHO05D002767 7.3e-72 274.2 181 77.3
Hund07047 Selenicereus undatus HOM05D002553 ORTHO05D002767 7.3e-72 274.2 177 78.5
AL6G39600 Arabidopsis lyrata HOM05D002553 ORTHO05D002767 9.5e-72 273.9 179 77.1
Aa31LG5G15560 Aethionema arabicum HOM05D002553 ORTHO05D002767 1.6e-71 273.1 179 78.2
Thhalv10020427m.g Eutrema salsugineum HOM05D002553 ORTHO05D002767 1.6e-71 273.1 179 78.2
Gorai.013G123700 Gossypium raimondii HOM05D002553 ORTHO05D002767 1.6e-71 273.1 181 77.9
CARHR186010 Cardamine hirsuta HOM05D002553 ORTHO05D002767 2.1e-71 272.7 179 77.1
FvH4_6g05350 Fragaria vesca HOM05D002553 ORTHO05D002767 2.1e-71 272.7 181 76.8
CSS0016581 Camellia sinensis var. sinensis HOM05D002553 ORTHO05D002767 2.8e-71 272.3 181 76.8
CSS0026671 Camellia sinensis var. sinensis HOM05D002553 ORTHO05D002767 2.8e-71 272.3 181 76.8
C07p40730 Brassica napus HOM05D002553 ORTHO05D002767 3.6e-71 271.9 180 76.7
Sopen01g042240 Solanum pennellii HOM05D002553 ORTHO05D002767 3.6e-71 271.9 181 76.2
TWI12G0069 Tripterygium wilfordii HOM05D002553 ORTHO05D002767 3.6e-71 271.9 181 76.8
A06p37580 Brassica napus HOM05D002553 ORTHO05D002767 4.7e-71 271.6 180 76.1
Duzib177G0165 Durio zibethinus HOM05D002553 ORTHO05D002767 4.7e-71 271.6 176 80.1
Thhalv10003627m.g Eutrema salsugineum HOM05D002553 ORTHO05D002767 4.7e-71 271.6 179 76.5
MSTRG.5079 Avicennia marina HOM05D002553 ORTHO05D002767 6.2e-71 271.2 200 71.0
Carub.0006s2513 Capsella rubella HOM05D002553 ORTHO05D002767 6.2e-71 271.2 179 76.5
Migut.N01859 Erythranthe guttata HOM05D002553 ORTHO05D002767 6.2e-71 271.2 179 77.7
FAN05G4192 Fragaria x ananassa HOM05D002553 ORTHO05D002767 6.2e-71 271.2 193 73.1
FAN05G5165 Fragaria x ananassa HOM05D002553 ORTHO05D002767 6.2e-71 271.2 193 73.1
Gohir.D13G110400 Gossypium hirsutum HOM05D002553 ORTHO05D002767 6.2e-71 271.2 181 77.3
CsaV3_2G004990 Cucumis sativus L. HOM05D002553 ORTHO05D002767 8.1e-71 270.8 177 78.5
BcaNung02463 Brassica carinata HOM05D002553 ORTHO05D002767 1.1e-70 270.4 180 76.1
BolC7t44601H Brassica oleracea HOM05D002553 ORTHO05D002767 1.1e-70 270.4 180 76.1
MELO3C004297.2 Cucumis melo HOM05D002553 ORTHO05D002767 1.1e-70 270.4 177 78.5
Nn4g26152 Nelumbo nucifera HOM05D002553 ORTHO05D002767 1.1e-70 270.4 177 79.1
Eucgr.B02001 Eucalyptus grandis HOM05D002553 ORTHO05D002767 1.4e-70 270.0 176 78.4
Nitab4.5_0006809g0010 Nicotiana tabacum HOM05D002553 ORTHO05D002767 1.4e-70 270.0 193 73.1
Sp3g04040 Schrenkiella parvula HOM05D002553 ORTHO05D002767 1.4e-70 270.0 179 77.1
GSVIVG01000009001 Vitis vinifera HOM05D002553 ORTHO05D002767 1.4e-70 270.0 181 77.9
Ah.06g190110 Amaranthus hybridus HOM05D002553 ORTHO05D002767 1.8e-70 269.6 179 76.5
BraA06t26677Z Brassica rapa HOM05D002553 ORTHO05D002767 1.8e-70 269.6 180 75.6
Hma1.2p1_0666F.1_g199470 Hydrangea macrophylla HOM05D002553 ORTHO05D002767 1.8e-70 269.6 181 75.7
Manes.09G163850 Manihot esculenta HOM05D002553 ORTHO05D002767 4.0e-70 268.5 179 77.1
BcaNung04368 Brassica carinata HOM05D002553 ORTHO05D002767 5.2e-70 268.1 180 75.0
FAN14G0929 Fragaria x ananassa HOM05D002553 ORTHO05D002767 6.8e-70 267.7 193 72.0
PSO210G1325 Papaver somniferum HOM05D002553 ORTHO05D002767 6.8e-70 267.7 181 75.7
A09p05260 Brassica napus HOM05D002553 ORTHO05D002767 8.9e-70 267.3 179 76.0
Carub.0003s0444 Capsella rubella HOM05D002553 ORTHO05D002767 8.9e-70 267.3 179 75.4
CARHR079530 Cardamine hirsuta HOM05D002553 ORTHO05D002767 1.2e-69 266.9 178 76.4
ECA247G0575 Erigeron canadensis HOM05D002553 ORTHO05D002767 1.5e-69 266.5 181 74.6
COL.COLO4_13515 Corchorus olitorius HOM05D002553 ORTHO05D002767 2.0e-69 266.2 175 78.3
Sed0024851 Sechium edule HOM05D002553 ORTHO05D002767 2.0e-69 266.2 180 76.1
BNapus_Darmor_BZH_scaffold_114p00250 Brassica napus HOM05D002553 ORTHO05D002767 2.6e-69 265.8 181 75.7
arahy.Tifrunner.gnm1.ann1.0VD1AP Arachis hypogaea HOM05D002553 ORTHO05D002767 3.4e-69 265.4 160 79.4
arahy.Tifrunner.gnm1.ann1.7PL8A0 Arachis hypogaea HOM05D002553 ORTHO05D002767 3.4e-69 265.4 160 79.4
Migut.B01190 Erythranthe guttata HOM05D002553 ORTHO05D002767 4.4e-69 265.0 161 82.0
Oeu012095.1 Olea europaea HOM05D002553 ORTHO05D002767 4.4e-69 265.0 179 71.5
QL03p004498 Quercus lobata HOM05D002553 ORTHO05D002767 4.4e-69 265.0 180 75.0
BraA09t36165Z Brassica rapa HOM05D002553 ORTHO05D002767 7.6e-69 264.2 179 74.9
Cpa.g.sc48.14 Carica papaya HOM05D002553 ORTHO05D002767 7.6e-69 264.2 181 75.1
Sabra05G0037500 Salix brachista HOM05D002553 ORTHO05D002767 7.6e-69 264.2 181 74.0
Sc09g0003340 Simmondsia chinensis HOM05D002553 ORTHO05D002767 7.6e-69 264.2 177 75.7
C09p05740 Brassica napus HOM05D002553 ORTHO05D002767 9.9e-69 263.8 179 74.9
BolC9t53501H Brassica oleracea HOM05D002553 ORTHO05D002767 9.9e-69 263.8 179 74.9
CAN.G1134.23 Capsicum annuum HOM05D002553 ORTHO05D002767 9.9e-69 263.8 181 74.0
MD04G1209000 Malus domestica HOM05D002553 ORTHO05D002767 1.3e-68 263.5 182 74.2
Potri.005G039100 Populus trichocarpa HOM05D002553 ORTHO05D002767 1.3e-68 263.5 181 74.0
TAR362G0623 Trochodendron aralioides HOM05D002553 ORTHO05D002767 1.7e-68 263.1 181 76.2
Cfa006549 Carpinus fangiana HOM05D002553 ORTHO05D002767 2.2e-68 262.7 181 74.0
MSTRG.16977 Avicennia marina HOM05D002553 ORTHO05D002767 2.9e-68 262.3 179 73.7
MBI17_g29610_MAGBIO Magnolia biondii HOM05D002553 ORTHO05D002767 2.9e-68 262.3 181 75.7
CiPaw.07G014800 Carya illinoinensis HOM05D002553 ORTHO05D002767 3.7e-68 261.9 180 73.3
Cc02_g32710 Coffea canephora HOM05D002553 ORTHO05D002767 3.7e-68 261.9 181 72.9
Aqoxy5G00545 Aquilegia oxysepala HOM05D002553 ORTHO05D002767 4.9e-68 261.5 177 76.8
FAN09G0499 Fragaria x ananassa HOM05D002553 ORTHO05D002767 4.9e-68 261.5 209 66.5
CANSAT54G1986 Cannabis sativa HOM05D002553 ORTHO05D002767 6.4e-68 261.2 200 68.5
Glyma.03G240100 Glycine max HOM05D002553 ORTHO05D002767 8.4e-68 260.8 181 73.5
ClCG02G016020 Citrullus lanatus HOM05D002553 ORTHO05D002767 1.1e-67 260.4 196 70.9
VMungo0540G1597 Vigna mungo HOM05D002553 ORTHO05D002767 1.1e-67 260.4 181 72.4
FAN14G5684 Fragaria x ananassa HOM05D002553 ORTHO05D002767 1.4e-67 260.0 172 77.3
Glyma.10G156701 Glycine max HOM05D002553 ORTHO05D002767 1.4e-67 260.0 181 72.4
TPR.G2739 Trifolium pratense HOM05D002553 ORTHO05D002767 1.4e-67 260.0 177 74.6
Gohir.A13G107200 Gossypium hirsutum HOM05D002553 ORTHO05D002767 2.4e-67 259.2 176 77.3
Lj5g0009152 Lotus japonicus HOM05D002553 ORTHO05D002767 4.1e-67 258.5 181 72.9
DCAR_003314 Daucus carota HOM05D002553 ORTHO05D002767 5.4e-67 258.1 195 70.3
Atru.chr2.475 Acer truncatum HOM05D002553 ORTHO05D002767 7.1e-67 257.7 175 75.4
Phvul.006G093911 Phaseolus vulgaris HOM05D002553 ORTHO05D002767 7.1e-67 257.7 177 73.4
Ca_10093_v3 Cicer arietinum L. HOM05D002553 ORTHO05D002767 9.2e-67 257.3 174 75.3
Lsat_1_v5_gn_1_25020 Lactuca sativa HOM05D002553 ORTHO05D002767 1.2e-66 256.9 179 74.9
Ciclev10003913m.g Citrus clementina HOM05D002553 ORTHO05D002767 2.1e-66 256.1 177 72.3
ATR0626G263 Amborella trichopoda HOM05D002553 ORTHO05D002767 2.7e-66 255.8 175 75.4
Zm00001eb017520 Zea mays HOM05D002553 ORTHO05D002767 2.7e-66 255.8 194 68.0
EL10Ac4g09309 Beta vulgaris HOM05D002553 ORTHO05D002767 4.6e-66 255.0 171 74.9
Psat6g149240 Pisum sativum HOM05D002553 ORTHO05D002767 6.0e-66 254.6 181 71.8
Medtr1g082470 Medicago truncatula HOM05D002553 ORTHO05D002767 7.8e-66 254.2 174 75.3
Lalb_Chr18g0045531 Lupinus albus HOM05D002553 ORTHO05D002767 2.3e-65 252.7 178 73.0
Medtr1g083370 Medicago truncatula HOM05D002553 ORTHO05D002767 5.1e-65 251.5 181 71.3
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 4.3e-64 248.4 200 65.0
TPR.G3095 Trifolium pratense HOM05D002553 ORTHO05D002767 6.8e-62 241.1 207 62.3
BolC1t05707H Brassica oleracea HOM05D002553 ORTHO05D002767 2.6e-61 239.2 167 74.3
Oeu013074.1 Olea europaea HOM05D002553 ORTHO05D002767 4.4e-61 238.4 168 72.0
Rhsim05G0144300 Rhododendron simsii HOM05D002553 ORTHO05D002767 4.9e-60 235.0 189 65.1
AUR62000869 Chenopodium quinoa HOM05D002553 ORTHO05D002767 8.7e-57 224.2 151 75.5
Haze_04233 Corylus avellana HOM05D002553 ORTHO05D002767 3.3e-56 222.2 188 66.0
BraSC132t45517Z Brassica rapa HOM05D002553 ORTHO05D002767 6.2e-55 218.0 164 70.1
Pp3c16_17790 Physcomitrium patens HOM05D002553 ORTHO05D002767 1.1e-54 217.2 179 63.1
Mapoly0006s0260 Marchantia polymorpha HOM05D002553 ORTHO05D002767 1.8e-54 216.5 175 64.0
Pp3c6_5420 Physcomitrium patens HOM05D002553 ORTHO05D002767 6.9e-54 214.5 175 62.3
SMO356G0084 Selaginella moellendorffii HOM05D002553 ORTHO05D002767 6.9e-54 214.5 175 64.0
HPP92_001339 Vanilla planifolia HOM05D002553 ORTHO05D002767 5.8e-53 211.5 175 64.6
AagrBONN_evm.TU.Sc2ySwM_344.2814 Anthoceros agrestis HOM05D002553 ORTHO05D002767 8.4e-52 207.6 174 63.2
HanXRQChr02g0037091 Helianthus annuus HOM05D002553 ORTHO05D002767 3.2e-51 205.7 139 77.7
Solyc01g098700.4 Solanum lycopersicum HOM05D002553 ORTHO05D002767 3.2e-51 205.7 139 77.0
FAN02G2444 Fragaria x ananassa HOM05D002553 ORTHO05D002767 1.0e-49 200.7 157 68.2
TAR636G3134 Trochodendron aralioides HOM05D002553 ORTHO05D002767 1.3e-49 200.3 174 61.5
CBR_g26135 Chara braunii HOM05D002553 ORTHO05D002767 2.5e-48 196.1 175 56.0
SalBow5G4087 Salvia bowleyana HOM05D002553 ORTHO05D002767 1.7e-44 183.3 127 74.8
BcaC04g23681 Brassica carinata HOM05D002553 ORTHO05D002767 7.1e-43 177.9 127 72.4
AUR62005107 Chenopodium quinoa HOM05D002553 ORTHO05D002767 7.1e-43 177.9 151 64.2
arahy.Tifrunner.gnm1.ann1.T73DMJ Arachis hypogaea HOM05D002553 ORTHO05D002767 1.8e-41 173.3 128 69.5
BcaB04g21368 Brassica carinata HOM05D002553 ORTHO05D002767 1.4e-38 163.7 143 62.9
Dinv23976 Davidia involucrata HOM05D002553 ORTHO05D002767 1.5e-37 160.2 114 71.9
Oeu064147.1 Olea europaea HOM05D002553 ORTHO05D002767 2.2e-36 156.4 118 67.8
Dinv22901 Davidia involucrata HOM05D002553 ORTHO05D002767 1.1e-35 154.1 84 86.9
arahy.Tifrunner.gnm1.ann1.FC6WKF Arachis hypogaea HOM05D002553 ORTHO05D002767 2.7e-34 149.4 84 84.5
HPP92_001400 Vanilla planifolia HOM05D002553 ORTHO05D002767 2.3e-33 146.4 83 84.3
arahy.Tifrunner.gnm1.ann1.EXNL9P Arachis hypogaea HOM05D002553 ORTHO05D002767 2.8e-31 139.4 78 83.3
VMungo1080G0516 Vigna mungo HOM05D002553 ORTHO05D002767 1.1e-30 137.5 77 83.1
MD12G1223700 Malus domestica HOM05D002553 ORTHO05D002767 1.9e-27 126.7 98 70.4
MD12G1223500 Malus domestica HOM05D002553 ORTHO05D002767 1.2e-18 97.4 56 82.1
Gohir.D05G181050 Gossypium hirsutum HOM05D002553 ORTHO05D002767 4.6e-18 95.5 81 65.4
Gorai.005G154800 Gossypium raimondii HOM05D002553 ORTHO05D002767 4.6e-18 95.5 81 65.4
Cre10.g458050 Chlamydomonas reinhardtii HOM05D002553 ORTHO05D002767 7.9e-18 94.7 153 35.9
Gohir.D07G194066 Gossypium hirsutum HOM05D002553 ORTHO05D002767 7.9e-18 94.7 81 65.4
Gorai.012G108000 Gossypium raimondii HOM05D002553 ORTHO05D002767 1.4e-17 94.0 81 64.2
Gohir.D03G082850 Gossypium hirsutum HOM05D002553 ORTHO05D002767 1.8e-17 93.6 80 65.0
Gorai.010G125000 Gossypium raimondii HOM05D002553 ORTHO05D002767 1.1e-16 90.9 80 63.8
MCO02G411 Micromonas commoda HOM05D002553 ORTHO05D002767 3.1e-14 82.8 186 30.6
Gohir.A12G276200 Gossypium hirsutum HOM05D002553 ORTHO05D002767 2.6e-13 79.7 68 67.6
PRCOL_00000574 Prasinoderma coloniale HOM05D002553 ORTHO05D002767 1.0e-12 77.8 141 32.6
Gohir.D07G108333 Gossypium hirsutum HOM05D002553 ORTHO05D002767 2.9e-12 76.3 68 64.7
Gorai.012G097400 Gossypium raimondii HOM05D002553 ORTHO05D002767 2.9e-12 76.3 67 65.7
Gorai.001G217100 Gossypium raimondii HOM05D002553 ORTHO05D002767 4.2e-11 72.4 64 65.6
BcaB04g19667 Brassica carinata HOM05D002553 ORTHO05D002767 1.2e-10 70.9 74 54.1
SMO351G0364 Selaginella moellendorffii HOM05D000658 ORTHO05D003223 1.1e-08 64.3 179 30.7
Gohir.A06G094900 Gossypium hirsutum HOM05D000658 ORTHO05D003223 1.7e-07 60.5 174 30.5
Gohir.D06G094400 Gossypium hirsutum HOM05D000658 ORTHO05D003223 3.7e-07 59.3 174 29.9
Mapoly0141s0025 Marchantia polymorpha HOM05D000658 ORTHO05D003223 6.3e-07 58.5 155 27.7
Migut.A00228 Erythranthe guttata HOM05D000658 ORTHO05D003223 8.2e-07 58.2 173 27.7
Lalb_Chr14g0362451 Lupinus albus HOM05D000658 ORTHO05D003223 8.2e-07 58.2 165 31.5
EL10Ac1g01938 Beta vulgaris HOM05D002553 ORTHO05D038995 1.1e-06 57.8 41 58.5
TPR.G3067 Trifolium pratense HOM05D002553 ORTHO05D038995 1.4e-06 57.4 29 86.2
Thecc.09G041200 Theobroma cacao HOM05D000658 ORTHO05D003223 1.8e-06 57.0 171 29.8
MSTRG.25901 Avicennia marina HOM05D000658 ORTHO05D003223 3.1e-06 56.2 160 30.6
Haze_21867 Corylus avellana HOM05D000658 ORTHO05D003223 4.1e-06 55.8 174 29.3
Medtr1g026860 Medicago truncatula HOM05D000658 ORTHO05D003223 4.1e-06 55.8 174 27.6
QL12p029581 Quercus lobata HOM05D000658 ORTHO05D003223 4.1e-06 55.8 165 28.5
CAN.G309.84 Capsicum annuum HOM05D000658 ORTHO05D003223 5.3e-06 55.5 173 30.1
ClCG11G015250 Citrullus lanatus HOM05D000658 ORTHO05D003223 5.3e-06 55.5 178 25.3
Glyma.17G190800 Glycine max HOM05D000658 ORTHO05D003223 5.3e-06 55.5 178 28.1
HPP92_028635 Vanilla planifolia HOM05D000658 ORTHO05D003223 5.3e-06 55.5 162 25.3
Dinv30263 Davidia involucrata HOM05D000658 ORTHO05D003223 7.0e-06 55.1 160 30.0
Peaxi162Scf00276g00312 Petunia axillaris HOM05D000658 ORTHO05D003223 7.0e-06 55.1 187 28.9
HPP92_002927 Vanilla planifolia HOM05D000658 ORTHO05D003223 9.1e-06 54.7 162 25.9


User provided reference genes

Program Settings