Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold22G09984 Striga asiatica HOM05D006960 ORTHO05D008699 3.2e-125 451.8 235 100.0
MSTRG.17349 Avicennia marina HOM05D006960 ORTHO05D008699 1.2e-79 300.4 236 66.9
Migut.B01880 Erythranthe guttata HOM05D006960 ORTHO05D008699 5.8e-79 298.1 234 70.5
Nitab4.5_0000258g0220 Nicotiana tabacum HOM05D006960 ORTHO05D008699 3.2e-77 292.4 233 68.2
SalBow3G0783 Salvia bowleyana HOM05D006960 ORTHO05D008699 1.6e-76 290.0 236 68.2
CSS0028122 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 6.7e-75 284.6 235 67.7
CSS0036785 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 1.1e-74 283.9 235 67.7
Nitab4.5_0004506g0020 Nicotiana tabacum HOM05D006960 ORTHO05D008699 5.7e-74 281.6 233 66.5
Oeu007886.1 Olea europaea HOM05D006960 ORTHO05D008699 4.8e-73 278.5 235 65.1
Oeu014974.1 Olea europaea HOM05D006960 ORTHO05D008699 4.8e-73 278.5 235 65.1
PGSC0003DMG400007011 Solanum tuberosum HOM05D006960 ORTHO05D008699 8.2e-73 277.7 233 66.1
CAN.G1178.29 Capsicum annuum HOM05D006960 ORTHO05D008699 1.1e-72 277.3 235 65.5
Actinidia20248 Actinidia chinensis HOM05D000567 ORTHO05D001981 4.1e-72 275.4 218 67.0
Rhsim01G0172900 Rhododendron simsii HOM05D006960 ORTHO05D008699 4.5e-71 271.9 229 65.1
Cc01_g12480 Coffea canephora HOM05D006960 ORTHO05D008699 1.0e-70 270.8 237 61.2
GSVIVG01027159001 Vitis vinifera HOM05D006960 ORTHO05D008699 1.3e-70 270.4 226 67.7
MELO3C024139.2 Cucumis melo HOM05D006960 ORTHO05D008699 1.7e-70 270.0 220 64.1
Rhsim04G0222700 Rhododendron simsii HOM05D006960 ORTHO05D008699 2.2e-70 269.6 235 63.0
ClCG09G009460 Citrullus lanatus HOM05D006960 ORTHO05D008699 2.9e-70 269.2 220 63.6
Sed0021558 Sechium edule HOM05D006960 ORTHO05D008699 2.9e-70 269.2 220 63.2
Solyc05g050570.3 Solanum lycopersicum HOM05D006960 ORTHO05D008699 5.0e-70 268.5 234 64.1
Sopen05g029010 Solanum pennellii HOM05D006960 ORTHO05D008699 5.0e-70 268.5 219 67.1
Ciclev10022060m.g Citrus clementina HOM05D006960 ORTHO05D008699 6.5e-70 268.1 219 65.3
Haze_15666 Corylus avellana HOM05D000451 ORTHO05D000351 1.1e-69 267.3 219 64.8
TAR629G1073 Trochodendron aralioides HOM05D006960 ORTHO05D008699 1.9e-69 266.5 234 61.5
vmacro12673 Vaccinium macrocarpon HOM05D006960 ORTHO05D008699 2.5e-69 266.2 234 62.0
Prupe.2G189500 Prunus persica HOM05D006960 ORTHO05D008699 3.2e-69 265.8 234 63.2
QL04p060559 Quercus lobata HOM05D006960 ORTHO05D008699 7.2e-69 264.6 234 62.0
ECA236G0577 Erigeron canadensis HOM05D006960 ORTHO05D008699 6.1e-68 261.5 234 62.4
Lalb_Chr06g0163941 Lupinus albus HOM05D006960 ORTHO05D008699 6.1e-68 261.5 232 61.6
EL10Ac1g00259 Beta vulgaris HOM05D006960 ORTHO05D008699 3.0e-67 259.2 219 62.1
HanXRQChr06g0170731 Helianthus annuus HOM05D006960 ORTHO05D008699 3.0e-67 259.2 219 62.1
Sc01g0002630 Simmondsia chinensis HOM05D000016 ORTHO05D007083 8.7e-67 257.7 222 61.3
COL.COLO4_21448 Corchorus olitorius HOM05D006960 ORTHO05D008699 1.1e-66 257.3 252 59.5
Lsat_1_v5_gn_8_13101 Lactuca sativa HOM05D006960 ORTHO05D008699 1.1e-66 257.3 236 60.2
MD07G1150800 Malus domestica HOM05D006960 ORTHO05D008699 1.5e-66 256.9 220 63.2
Thecc.01G341400 Theobroma cacao HOM05D006960 ORTHO05D008699 1.9e-66 256.5 240 59.6
CANSAT56G1276 Cannabis sativa HOM05D006960 ORTHO05D008699 4.3e-66 255.4 236 61.0
Potri.014G099500 Populus trichocarpa HOM05D006960 ORTHO05D008699 4.3e-66 255.4 251 59.8
Cpa.g.sc46.111 Carica papaya HOM05D006960 ORTHO05D008699 7.4e-66 254.6 226 61.1
Atru.chr5.678 Acer truncatum HOM05D006960 ORTHO05D008699 9.7e-66 254.2 234 61.1
BolC8t52877H Brassica oleracea HOM05D006960 ORTHO05D008699 9.7e-66 254.2 242 61.2
Gohir.D11G102000 Gossypium hirsutum HOM05D006960 ORTHO05D008699 1.3e-65 253.8 252 58.3
RcHm_v2.0_Chr1g0359831 Rosa chinensis HOM05D006960 ORTHO05D008699 1.3e-65 253.8 238 63.4
CAN.G1385.4 Capsicum annuum HOM05D006960 ORTHO05D008699 1.6e-65 253.4 196 67.3
DCAR_021504 Daucus carota HOM05D006960 ORTHO05D008699 2.2e-65 253.1 237 62.0
FAN10G0984 Fragaria x ananassa HOM05D006960 ORTHO05D008699 2.2e-65 253.1 236 62.3
Gorai.007G109000 Gossypium raimondii HOM05D006960 ORTHO05D008699 2.2e-65 253.1 252 57.9
FvH4_7g16680 Fragaria vesca HOM05D006960 ORTHO05D008699 3.7e-65 252.3 236 62.3
C08p53630 Brassica napus HOM05D006960 ORTHO05D008699 4.8e-65 251.9 240 60.8
Gohir.A11G097200 Gossypium hirsutum HOM05D006960 ORTHO05D008699 4.8e-65 251.9 249 58.6
Peaxi162Scf00716g00022 Petunia axillaris HOM05D006960 ORTHO05D008699 4.8e-65 251.9 196 66.8
BraA09t42243Z Brassica rapa HOM05D006960 ORTHO05D008699 6.3e-65 251.5 242 60.3
FAN06G3195 Fragaria x ananassa HOM05D006960 ORTHO05D008699 6.3e-65 251.5 236 61.9
TWI14G0597 Tripterygium wilfordii HOM05D006960 ORTHO05D008699 6.3e-65 251.5 235 59.6
FAN01G3090 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.4e-64 250.4 236 61.9
FAN10G4095 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.4e-64 250.4 220 64.1
Aqoxy6G00316 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 1.8e-64 250.0 235 60.4
A09p69060 Brassica napus HOM05D006960 ORTHO05D008699 4.1e-64 248.8 240 60.4
FAN06G2002 Fragaria x ananassa HOM05D006960 ORTHO05D008699 5.3e-64 248.4 236 61.0
Phvul.007G014400 Phaseolus vulgaris HOM05D006960 ORTHO05D008699 6.9e-64 248.1 216 62.0
Glyma.20G102700 Glycine max HOM05D006960 ORTHO05D008699 9.0e-64 247.7 216 62.0
Eucgr.E00049 Eucalyptus grandis HOM05D006960 ORTHO05D008699 1.2e-63 247.3 240 59.2
PGR142G3971 Punica granatum HOM05D006960 ORTHO05D008699 1.5e-63 246.9 231 58.9
Psat6g234040 Pisum sativum HOM05D006960 ORTHO05D008699 2.0e-63 246.5 233 60.1
VMungo0720G2201 Vigna mungo HOM05D006960 ORTHO05D008699 2.0e-63 246.5 216 62.0
Ca_11259_v3 Cicer arietinum L. HOM05D006960 ORTHO05D008699 2.6e-63 246.1 232 59.9
Manes.05G022300 Manihot esculenta HOM05D006960 ORTHO05D008699 3.4e-63 245.7 257 56.8
Lj5g0001318 Lotus japonicus HOM05D006960 ORTHO05D008699 4.5e-63 245.4 232 60.3
PSO063G6262 Papaver somniferum HOM05D006960 ORTHO05D008699 4.5e-63 245.4 233 57.1
CARHR001180 Cardamine hirsuta HOM05D006960 ORTHO05D008699 5.9e-63 245.0 252 55.2
Thhalv10008544m.g Eutrema salsugineum HOM05D006960 ORTHO05D008699 5.9e-63 245.0 250 59.2
Dinv22299 Davidia involucrata HOM05D006960 ORTHO05D008699 7.7e-63 244.6 221 63.3
Nn8g41032 Nelumbo nucifera HOM05D006960 ORTHO05D008699 2.2e-62 243.0 197 66.0
AUR62004502 Chenopodium quinoa HOM05D006960 ORTHO05D008699 1.1e-61 240.7 220 58.2
Sp1g01000 Schrenkiella parvula HOM05D006960 ORTHO05D008699 1.1e-61 240.7 249 57.4
unitig_899.g14796 Utricularia gibba HOM05D006960 ORTHO05D008699 2.5e-61 239.6 199 63.3
Medtr5g015740 Medicago truncatula HOM05D006960 ORTHO05D008699 5.5e-61 238.4 238 58.8
Zm00001eb080710 Zea mays HOM05D006960 ORTHO05D008699 5.5e-61 238.4 205 62.0
TPR.G4075 Trifolium pratense HOM05D006960 ORTHO05D008699 4.6e-60 235.3 217 59.4
AL1G11170 Arabidopsis lyrata HOM05D006960 ORTHO05D008699 6.1e-60 235.0 228 58.3
Sabra14G0073000 Salix brachista HOM05D006960 ORTHO05D008699 6.1e-60 235.0 215 60.5
Medtr1g114590 Medicago truncatula HOM05D006960 ORTHO05D008699 7.9e-60 234.6 238 58.0
Aa31LG5G970 Aethionema arabicum HOM05D000451 ORTHO05D000351 1.0e-59 234.2 209 63.2
Carub.0001s0093 Capsella rubella HOM05D006960 ORTHO05D008699 1.4e-59 233.8 250 56.4
Aqoxy3G01066 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 1.8e-59 233.4 198 63.1
Hund16718 Selenicereus undatus HOM05D006960 ORTHO05D008699 1.8e-59 233.4 218 58.3
MBI06_g44795_MAGBIO Magnolia biondii HOM05D006960 ORTHO05D008699 3.9e-59 232.3 217 58.5
AT1G01290 Arabidopsis thaliana HOM05D006960 ORTHO05D008699 6.7e-59 231.5 156 75.0
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 2.8e-57 226.1 182 65.4
Os04g0460500 Oryza sativa ssp. japonica HOM05D006960 ORTHO05D008699 4.8e-57 225.3 205 60.0
PSO170G4910 Papaver somniferum HOM05D006960 ORTHO05D008699 4.8e-57 225.3 205 58.5
arahy.Tifrunner.gnm1.ann1.CCVT8N Arachis hypogaea HOM05D006960 ORTHO05D008699 1.5e-55 220.3 178 66.3
ATR0602G026 Amborella trichopoda HOM05D006960 ORTHO05D008699 8.5e-54 214.5 200 58.0
HPP92_002925 Vanilla planifolia HOM05D006960 ORTHO05D008699 1.1e-48 197.6 154 64.3
Mapoly0053s0024 Marchantia polymorpha HOM05D006960 ORTHO05D008699 2.1e-44 183.3 154 63.6
Pp3c20_11370 Physcomitrium patens HOM05D006960 ORTHO05D008699 1.1e-42 177.6 154 60.4
SMO351G0341 Selaginella moellendorffii HOM05D006960 ORTHO05D008699 5.7e-42 175.3 193 53.4
Cre08.g361050 Chlamydomonas reinhardtii HOM05D006960 ORTHO05D008699 2.4e-40 169.9 155 57.4
CsaV3_7G025390 Cucumis sativus L. HOM05D006960 ORTHO05D008699 2.0e-39 166.8 151 59.6
AUR62014969 Chenopodium quinoa HOM05D006960 ORTHO05D008699 1.3e-38 164.1 220 44.5
VMungo0964G0001 Vigna mungo HOM05D006960 ORTHO05D008699 6.8e-35 151.8 160 48.8
CBR_g23014 Chara braunii HOM05D006960 ORTHO05D008699 8.8e-35 151.4 157 51.0
CDE10G0236 Ceratophyllum demersum HOM05D006960 ORTHO05D008699 1.7e-33 147.1 218 41.7
MCO01G113 Micromonas commoda HOM05D006960 ORTHO05D008699 6.3e-33 145.2 156 50.0
HPP92_028636 Vanilla planifolia HOM05D006960 ORTHO05D008699 1.8e-32 143.7 224 42.4
AUR62023452 Chenopodium quinoa HOM05D000040 ORTHO05D000759 4.5e-31 139.0 198 44.9
CDE10G0916 Ceratophyllum demersum HOM05D000108 ORTHO05D001781 1.7e-30 137.1 112 62.5
FAN03G0019 Fragaria x ananassa HOM05D006960 ORTHO05D008699 4.9e-25 119.0 93 64.5
Cfa022703 Carpinus fangiana HOM05D006960 ORTHO05D008699 6.6e-22 108.6 159 43.4
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 2.8e-20 103.2 112 44.6
Cpa.g.sc96.27 Carica papaya HOM05D006960 ORTHO05D008699 4.7e-20 102.4 157 40.8
TAR636G2744 Trochodendron aralioides HOM05D006960 ORTHO05D008699 7.0e-16 88.6 109 46.8
PRCOL_00000953 Prasinoderma coloniale HOM05D006960 ORTHO05D008699 1.5e-13 80.9 154 35.1
CiPaw.01G076800 Carya illinoinensis HOM05D006960 ORTHO05D008699 6.2e-12 75.5 112 44.6
Medtr5g015730 Medicago truncatula HOM05D006960 ORTHO05D008699 5.0e-06 55.8 36 66.7


User provided reference genes

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