Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 1.4e-50 202.6 101 100.0
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 1.8e-40 169.1 101 78.2
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 6.9e-37 157.1 101 75.2
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 9.0e-37 156.8 100 73.0
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.7e-35 152.5 101 74.3
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 9.3e-34 146.7 100 70.0
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 1.6e-33 146.0 101 70.3
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 1.6e-33 146.0 101 67.3
THA.LOC104803862 Tarenaya hassleriana HOM05D003524 ORTHO05D003988 4.6e-33 144.4 99 68.7
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 6.1e-33 144.1 101 67.3
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 7.9e-33 143.7 100 69.0
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 1.0e-32 143.3 101 70.3
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 1.0e-32 143.3 101 69.3
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 1.0e-32 143.3 101 69.3
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 1.0e-32 143.3 101 69.3
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 1.0e-32 143.3 99 70.7
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 1.8e-32 142.5 101 66.3
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 2.3e-32 142.1 101 69.3
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 2.3e-32 142.1 101 69.3
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 2.3e-32 142.1 101 68.3
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 3.0e-32 141.7 101 68.3
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 3.0e-32 141.7 99 68.7
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 3.0e-32 141.7 102 70.6
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 3.0e-32 141.7 98 69.4
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 3.0e-32 141.7 101 68.3
Solyc08g006800.3 Solanum lycopersicum HOM05D003524 ORTHO05D003988 3.0e-32 141.7 102 65.7
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 3.9e-32 141.4 101 69.3
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 3.9e-32 141.4 101 69.3
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 3.9e-32 141.4 101 69.3
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 3.9e-32 141.4 101 69.3
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 6.7e-32 140.6 100 68.0
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 6.7e-32 140.6 101 68.3
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 8.7e-32 140.2 101 67.3
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 8.7e-32 140.2 101 67.3
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 1.1e-31 139.8 101 65.3
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.1e-31 139.8 99 70.7
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 1.1e-31 139.8 101 67.3
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 1.5e-31 139.4 101 65.3
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 3.3e-31 138.3 101 64.4
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 3.3e-31 138.3 101 64.4
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 5.7e-31 137.5 101 65.3
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 7.4e-31 137.1 101 66.3
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 7.4e-31 137.1 101 64.4
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 9.7e-31 136.7 101 66.3
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 9.7e-31 136.7 99 65.7
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 1.3e-30 136.3 102 66.7
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 1.6e-30 136.0 101 66.3
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 1.6e-30 136.0 97 68.0
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 2.2e-30 135.6 101 64.4
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 2.2e-30 135.6 100 66.0
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 2.8e-30 135.2 102 65.7
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 3.7e-30 134.8 99 68.7
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 6.3e-30 134.0 101 65.3
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 1.4e-29 132.9 101 66.3
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 1.8e-29 132.5 97 63.9
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 1.8e-29 132.5 100 66.0
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 3.1e-29 131.7 99 61.6
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 3.1e-29 131.7 106 63.2
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 3.1e-29 131.7 98 63.3
RcHm_v2.0_Chr6g0299391 Rosa chinensis HOM05D003524 ORTHO05D003988 3.1e-29 131.7 98 65.3
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 3.1e-29 131.7 101 65.3
Gohir.D05G062000 Gossypium hirsutum HOM05D003524 ORTHO05D003988 5.3e-29 131.0 101 61.4
Gorai.009G063100 Gossypium raimondii HOM05D003524 ORTHO05D003988 5.3e-29 131.0 101 61.4
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 5.3e-29 131.0 101 61.4
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 6.9e-29 130.6 95 65.3
PGSC0003DMG400026298 Solanum tuberosum HOM05D003524 ORTHO05D003988 9.0e-29 130.2 91 67.0
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 1.5e-28 129.4 97 62.9
BraA08t33803Z Brassica rapa HOM05D003524 ORTHO05D003988 2.6e-28 128.6 93 67.7
Sopen08g002750 Solanum pennellii HOM05D003524 ORTHO05D003988 3.4e-28 128.3 91 64.8
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 7.7e-28 127.1 101 64.4
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 7.7e-28 127.1 101 64.4
Gohir.A05G059800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 7.7e-28 127.1 100 60.0
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.0e-27 126.7 99 65.7
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.3e-27 126.3 104 59.6
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 2.2e-27 125.6 98 62.2
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 2.9e-27 125.2 104 60.6
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 3.8e-27 124.8 98 61.2
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 1.4e-26 122.9 101 62.4
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 1.9e-26 122.5 89 67.4
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 3.2e-26 121.7 102 59.8
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 9.4e-26 120.2 99 62.6
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 1.6e-25 119.4 98 56.1
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 2.3e-24 115.5 94 61.7
EL10Ac2g02500 Beta vulgaris HOM05D003524 ORTHO05D003988 5.1e-24 114.4 103 57.3
Sed0019715 Sechium edule HOM05D003524 ORTHO05D003988 4.3e-23 111.3 98 60.2
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 2.8e-22 108.6 76 65.8
AUR62024806 Chenopodium quinoa HOM05D003524 ORTHO05D003988 1.4e-21 106.3 100 54.0
Os09g0127700 Oryza sativa ssp. japonica HOM05D003524 ORTHO05D003988 2.4e-21 105.5 94 57.4
Ah.12g060790 Amaranthus hybridus HOM05D003524 ORTHO05D003988 6.9e-21 104.0 102 52.9
Zm00001eb095580 Zea mays HOM05D003524 ORTHO05D003988 6.9e-21 104.0 94 55.3
Duzib168G0976 Durio zibethinus HOM05D003524 ORTHO05D003988 4.5e-20 101.3 101 53.5
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 7.7e-20 100.5 79 62.0
Manes.16G130000 Manihot esculenta HOM05D003524 ORTHO05D003988 1.7e-19 99.4 89 55.1
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 8.5e-19 97.1 80 58.8
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 8.5e-19 97.1 80 58.8
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 1.9e-18 95.9 87 58.6
FAN15G0945 Fragaria x ananassa HOM05D003524 ORTHO05D003988 9.4e-18 93.6 75 62.7
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 4.7e-17 91.3 99 49.5
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 6.7e-16 87.4 80 52.5
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 1.1e-15 86.7 85 54.1
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 1.5e-15 86.3 101 48.5
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 9.7e-15 83.6 89 55.1
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 1.7e-14 82.8 77 48.1
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 2.2e-14 82.4 83 53.0
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 3.7e-14 81.6 83 53.0
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 3.7e-14 81.6 75 57.3
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 4.8e-14 81.3 87 50.6
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 4.1e-13 78.2 62 62.9
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 7.0e-13 77.4 62 61.3
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.6e-12 76.3 76 55.3
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.6e-12 76.3 76 55.3
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 1.6e-12 76.3 70 55.7
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 1.6e-12 76.3 86 52.3
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 1.6e-12 76.3 78 52.6
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 2.0e-12 75.9 70 55.7
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 2.6e-12 75.5 88 52.3
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 1.3e-11 73.2 80 51.2
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 1.3e-11 73.2 80 51.2
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 1.7e-11 72.8 77 53.2
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 1.7e-11 72.8 70 52.9
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 2.2e-11 72.4 78 48.7
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 2.2e-11 72.4 71 52.1
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 2.9e-11 72.0 77 49.4
Nitab4.5_0002947g0020 Nicotiana tabacum HOM05D003524 ORTHO05D003988 2.9e-11 72.0 47 70.2
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 2.9e-11 72.0 69 52.2
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 3.8e-11 71.6 81 44.4
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 3.8e-11 71.6 62 58.1
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 6.5e-11 70.9 62 58.1
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 8.5e-11 70.5 62 56.5
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 8.5e-11 70.5 62 56.5
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 8.5e-11 70.5 77 51.9
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 8.5e-11 70.5 62 56.5
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 1.1e-10 70.1 62 53.2
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.1e-10 70.1 62 56.5
Prupe.1G394100 Prunus persica HOM05D003524 ORTHO05D003988 1.1e-10 70.1 91 47.3
Nitab4.5_0002011g0090 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.5e-10 69.7 60 45.0
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 1.5e-10 69.7 60 58.3
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 2.5e-10 68.9 62 54.8
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 2.5e-10 68.9 69 52.2
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 3.2e-10 68.6 62 54.8
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 5.5e-10 67.8 79 43.0
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 5.5e-10 67.8 62 53.2
Nitab4.5_0003563g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 7.2e-10 67.4 62 43.5
AagrBONN_evm.TU.Sc2ySwM_368.420 Anthoceros agrestis HOM05D003524 ORTHO05D003988 9.4e-10 67.0 91 44.0
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 1.2e-09 66.6 62 54.8
AUR62032414 Chenopodium quinoa HOM05D003524 ORTHO05D003988 1.6e-09 66.2 97 42.3
Lsat_1_v5_gn_7_49941 Lactuca sativa HOM05D003524 ORTHO05D003988 1.6e-09 66.2 64 59.4
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 1.6e-09 66.2 62 51.6
Nitab4.5_0006523g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 2.1e-09 65.9 62 56.5
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 3.6e-09 65.1 60 56.7
Mapoly0006s0148 Marchantia polymorpha HOM05D003524 ORTHO05D003988 4.7e-09 64.7 74 45.9
ECA240G1327 Erigeron canadensis HOM05D003524 ORTHO05D003988 6.1e-09 64.3 63 57.1
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 8.0e-09 63.9 60 55.0
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.0e-08 63.5 86 43.0
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.0e-08 63.5 86 43.0
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.0e-08 63.5 86 43.0
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 1.0e-08 63.5 110 37.3
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 3.0e-08 62.0 106 38.7
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 4.0e-08 61.6 63 52.4
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 4.0e-08 61.6 62 48.4
Gohir.D05G054800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 2.0e-07 59.3 60 51.7
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 2.6e-07 58.9 62 48.4
AL6G44970 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 9.7e-07 57.0 63 50.8
BcaB01g02731 Brassica carinata HOM05D003524 ORTHO05D003988 9.7e-07 57.0 63 52.4
Carub.0006s2963 Capsella rubella HOM05D003524 ORTHO05D003988 9.7e-07 57.0 63 52.4
Gohir.A05G053200 Gossypium hirsutum HOM05D003524 ORTHO05D003988 1.3e-06 56.6 46 56.5
BcaC01g04654 Brassica carinata HOM05D003524 ORTHO05D003988 1.7e-06 56.2 63 52.4
A03p29240 Brassica napus HOM05D003524 ORTHO05D003988 1.7e-06 56.2 63 52.4
C03p35250 Brassica napus HOM05D003524 ORTHO05D003988 1.7e-06 56.2 63 52.4
BolC3t15837H Brassica oleracea HOM05D003524 ORTHO05D003988 1.7e-06 56.2 63 52.4
BraA03t12119Z Brassica rapa HOM05D003524 ORTHO05D003988 1.7e-06 56.2 63 52.4
Gorai.009G056500 Gossypium raimondii HOM05D003524 ORTHO05D003988 1.7e-06 56.2 46 58.7
BcaC03g16382 Brassica carinata HOM05D003524 ORTHO05D003988 4.8e-06 54.7 63 52.4
C02p42080 Brassica napus HOM05D003524 ORTHO05D003988 4.8e-06 54.7 63 52.4
BolC2t10246H Brassica oleracea HOM05D003524 ORTHO05D003988 4.8e-06 54.7 63 52.4
CARHR255710 Cardamine hirsuta HOM05D003524 ORTHO05D003988 4.8e-06 54.7 63 49.2
A09p28280 Brassica napus HOM05D003524 ORTHO05D003988 6.3e-06 54.3 63 49.2
BraA09t38397Z Brassica rapa HOM05D003524 ORTHO05D003988 6.3e-06 54.3 63 49.2
Thhalv10029345m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 6.3e-06 54.3 63 52.4
Nn7g38002 Nelumbo nucifera HOM05D003524 ORTHO05D003988 6.3e-06 54.3 95 35.8
A02p26460 Brassica napus HOM05D003524 ORTHO05D003988 8.2e-06 53.9 63 50.8
BraA02t07649Z Brassica rapa HOM05D003524 ORTHO05D003988 8.2e-06 53.9 63 50.8


User provided reference genes

Program Settings