Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold22G09903 Striga asiatica HOM05D004971 ORTHO05D006289 9.5e-217 756.5 374 100.0
SGA_v2.0_scaffold20G09148 Striga asiatica HOM05D004971 ORTHO05D006289 2.2e-173 612.5 309 95.1
MSTRG.19566 Avicennia marina HOM05D004971 ORTHO05D006289 7.5e-121 438.0 303 70.6
Oeu000366.2 Olea europaea HOM05D004971 ORTHO05D006289 3.3e-108 396.0 315 64.1
Migut.J01131 Erythranthe guttata HOM05D004971 ORTHO05D006289 1.4e-106 390.6 267 69.7
CSS0031404 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 7.5e-105 384.8 276 65.9
unitig_748.g8739 Utricularia gibba HOM05D004971 ORTHO05D006289 6.4e-104 381.7 264 66.7
Rhsim03G0239000 Rhododendron simsii HOM05D004971 ORTHO05D006289 2.7e-102 376.3 261 67.0
Dinv41645 Davidia involucrata HOM05D004971 ORTHO05D006289 1.1e-100 370.9 267 64.0
Nitab4.5_0003331g0010 Nicotiana tabacum HOM05D004971 ORTHO05D006289 2.2e-96 356.7 267 62.9
Cc06_g10130 Coffea canephora HOM05D004971 ORTHO05D006289 4.9e-96 355.5 261 64.8
Oeu017816.1 Olea europaea HOM05D004971 ORTHO05D006289 1.1e-95 354.4 240 69.6
Sopen05g028390 Solanum pennellii HOM05D004971 ORTHO05D006289 1.4e-95 354.0 270 63.0
Nitab4.5_0000066g0130 Nicotiana tabacum HOM05D004971 ORTHO05D006289 3.2e-95 352.8 271 62.0
HanXRQChr09g0239411 Helianthus annuus HOM05D004971 ORTHO05D006289 2.1e-94 350.1 286 59.1
ECA240G1764 Erigeron canadensis HOM05D004971 ORTHO05D006289 6.0e-94 348.6 285 58.9
Solyc05g050000.3 Solanum lycopersicum HOM05D004971 ORTHO05D006289 1.3e-93 347.4 296 58.4
GSVIVG01015340001 Vitis vinifera HOM05D004971 ORTHO05D006289 2.3e-93 346.7 283 60.1
CANSAT56G2306 Cannabis sativa HOM05D004971 ORTHO05D006289 2.8e-91 339.7 297 57.2
Actinidia32663 Actinidia chinensis HOM05D004971 ORTHO05D006289 5.3e-90 335.5 274 60.9
CANSAT56G1645 Cannabis sativa HOM05D004971 ORTHO05D006289 5.3e-90 335.5 295 58.0
Lsat_1_v5_gn_7_41360 Lactuca sativa HOM05D004971 ORTHO05D006289 1.5e-89 334.0 287 57.1
Peaxi162Scf00539g00614 Petunia axillaris HOM05D004971 ORTHO05D006289 3.4e-89 332.8 276 59.8
AL8G25390 Arabidopsis lyrata HOM05D004971 ORTHO05D006289 4.9e-88 328.9 289 57.1
QL01p004043 Quercus lobata HOM05D004971 ORTHO05D006289 1.4e-87 327.4 272 60.3
Carub.0008s1117 Capsella rubella HOM05D004971 ORTHO05D006289 4.2e-87 325.9 270 59.6
CARHR256940 Cardamine hirsuta HOM05D004971 ORTHO05D006289 2.1e-86 323.6 269 58.4
Lalb_Chr05g0223101 Lupinus albus HOM05D004971 ORTHO05D006289 2.1e-86 323.6 271 58.7
AT5G51130 Arabidopsis thaliana HOM05D004971 ORTHO05D006289 7.8e-86 321.6 268 58.2
Thhalv10014188m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.3e-85 320.9 262 59.9
THA.LOC104811095 Tarenaya hassleriana HOM05D004971 ORTHO05D006289 2.3e-85 320.1 304 55.9
Glyma.08G035500 Glycine max HOM05D004971 ORTHO05D006289 3.0e-85 319.7 278 58.6
PGSC0003DMG400021659 Solanum tuberosum HOM05D004971 ORTHO05D006289 3.0e-85 319.7 338 49.7
CAN.G399.3 Capsicum annuum HOM05D004971 ORTHO05D006289 3.9e-85 319.3 259 60.2
CiPaw.03G227700 Carya illinoinensis HOM05D004971 ORTHO05D006289 5.1e-85 318.9 267 60.7
Hund26242 Selenicereus undatus HOM05D004971 ORTHO05D006289 2.5e-84 316.6 286 53.5
Prupe.7G224700 Prunus persica HOM05D004971 ORTHO05D006289 3.3e-84 316.2 274 56.9
Aa31LG3G7640 Aethionema arabicum HOM05D004971 ORTHO05D006289 4.3e-84 315.8 286 55.9
Eucgr.C03795 Eucalyptus grandis HOM05D004971 ORTHO05D006289 5.6e-84 315.5 277 56.7
Lj4g0001585 Lotus japonicus HOM05D004971 ORTHO05D006289 1.6e-83 313.9 262 58.0
Thecc.09G104800 Theobroma cacao HOM05D004971 ORTHO05D006289 2.8e-83 313.2 280 53.6
Phvul.002G310900 Phaseolus vulgaris HOM05D004971 ORTHO05D006289 3.6e-83 312.8 296 54.4
RcHm_v2.0_Chr2g0091361 Rosa chinensis HOM05D004971 ORTHO05D006289 6.2e-83 312.0 293 55.6
BcaC01g06076 Brassica carinata HOM05D004971 ORTHO05D006289 1.1e-82 311.2 261 57.9
PGR102G0147 Punica granatum HOM05D004971 ORTHO05D006289 1.5e-81 307.4 254 59.4
vmacro06238 Vaccinium macrocarpon HOM05D004971 ORTHO05D006289 2.6e-81 306.6 298 51.7
VMungo0251G3379 Vigna mungo HOM05D004971 ORTHO05D006289 2.6e-81 306.6 277 56.7
Atru.chr7.1418 Acer truncatum HOM05D004971 ORTHO05D006289 4.5e-81 305.8 297 54.9
AUR62021639 Chenopodium quinoa HOM05D004971 ORTHO05D006289 4.5e-81 305.8 289 54.3
BcaB05g24018 Brassica carinata HOM05D004971 ORTHO05D006289 7.6e-81 305.1 255 58.0
BcaC03g14623 Brassica carinata HOM05D004971 ORTHO05D006289 7.6e-81 305.1 256 58.2
BolC2t08195H Brassica oleracea HOM05D004971 ORTHO05D006289 7.6e-81 305.1 256 58.2
A02p12480 Brassica napus HOM05D004971 ORTHO05D006289 9.9e-81 304.7 258 58.1
BraA02t06311Z Brassica rapa HOM05D004971 ORTHO05D006289 9.9e-81 304.7 258 58.1
Medtr8g102950 Medicago truncatula HOM05D004971 ORTHO05D006289 9.9e-81 304.7 271 57.2
Potri.018G084700 Populus trichocarpa HOM05D004971 ORTHO05D006289 1.3e-80 304.3 271 55.7
TPR.G23453 Trifolium pratense HOM05D004971 ORTHO05D006289 1.3e-80 304.3 297 54.9
Sp6g13340 Schrenkiella parvula HOM05D004971 ORTHO05D006289 2.9e-80 303.1 258 56.6
BraA03t10920Z Brassica rapa HOM05D004971 ORTHO05D006289 3.8e-80 302.8 261 56.7
A03p16290 Brassica napus HOM05D004971 ORTHO05D006289 6.4e-80 302.0 260 56.9
C02p20580 Brassica napus HOM05D004971 ORTHO05D006289 8.4e-80 301.6 256 57.8
BcaC01g06098 Brassica carinata HOM05D004971 ORTHO05D006289 1.9e-79 300.4 262 56.1
BolC3t14306H Brassica oleracea HOM05D004971 ORTHO05D006289 1.9e-79 300.4 262 56.1
MD15G1192600 Malus domestica HOM05D004971 ORTHO05D006289 1.9e-79 300.4 271 55.0
TAR626G1908 Trochodendron aralioides HOM05D001382 ORTHO05D006289 1.9e-79 300.4 298 53.7
FvH4_1g05710 Fragaria vesca HOM05D004971 ORTHO05D006289 2.4e-79 300.1 266 57.9
Sabra18G0073100 Salix brachista HOM05D004971 ORTHO05D006289 2.4e-79 300.1 263 55.9
C03p19180 Brassica napus HOM05D004971 ORTHO05D006289 3.2e-79 299.7 291 52.6
arahy.Tifrunner.gnm1.ann1.050WC1 Arachis hypogaea HOM05D004971 ORTHO05D006289 4.2e-79 299.3 286 54.2
FAN19G1252 Fragaria x ananassa HOM05D001382 ORTHO05D001266 4.2e-79 299.3 262 56.5
TAR636G2606 Trochodendron aralioides HOM05D004971 ORTHO05D006289 4.2e-79 299.3 292 54.1
FAN23G0317 Fragaria x ananassa HOM05D001382 ORTHO05D006289 7.1e-79 298.5 270 55.9
arahy.Tifrunner.gnm1.ann1.R8N6MQ Arachis hypogaea HOM05D004971 ORTHO05D006289 4.6e-78 295.8 286 52.4
Nn3g18146 Nelumbo nucifera HOM05D004971 ORTHO05D006289 4.6e-78 295.8 282 52.8
FAN28G1806 Fragaria x ananassa HOM05D001382 ORTHO05D006289 6.0e-78 295.4 265 57.4
Sc08g0007770 Simmondsia chinensis HOM05D004971 ORTHO05D006289 6.0e-78 295.4 282 53.5
FAN26G3039 Fragaria x ananassa HOM05D001382 ORTHO05D001266 7.9e-78 295.0 268 55.6
COL.COLO4_34800 Corchorus olitorius HOM05D004971 ORTHO05D006289 1.8e-77 293.9 244 58.2
ClCG06G008900 Citrullus lanatus HOM05D004971 ORTHO05D006289 5.1e-77 292.4 272 52.9
TWI12G1172 Tripterygium wilfordii HOM05D004971 ORTHO05D006289 6.7e-77 292.0 263 52.1
HanXRQChr03g0061421 Helianthus annuus HOM05D004971 ORTHO05D006289 1.9e-76 290.4 250 54.8
Gohir.A07G004400 Gossypium hirsutum HOM05D004971 ORTHO05D006289 5.6e-76 288.9 322 46.6
Gorai.001G007500 Gossypium raimondii HOM05D004971 ORTHO05D006289 2.1e-75 287.0 322 46.3
Gohir.D07G007800 Gossypium hirsutum HOM05D004971 ORTHO05D006289 2.8e-75 286.6 322 46.3
PSO675G4950 Papaver somniferum HOM05D004971 ORTHO05D006289 2.8e-75 286.6 272 54.0
Os08g0540500 Oryza sativa ssp. japonica HOM05D004971 ORTHO05D006289 1.1e-74 284.6 259 52.1
PSO541G6366 Papaver somniferum HOM05D004971 ORTHO05D006289 1.1e-74 284.6 273 54.2
Aqoxy7G01513 Aquilegia oxysepala HOM05D004971 ORTHO05D006289 1.4e-74 284.3 271 53.1
Lj7A659G31 Lonicera japonica HOM05D004971 ORTHO05D006289 4.0e-74 282.7 288 51.7
Psat7g014440 Pisum sativum HOM05D004971 ORTHO05D006289 4.0e-74 282.7 279 53.8
HPP92_012900 Vanilla planifolia HOM05D004971 ORTHO05D006289 9.3e-71 271.6 288 46.2
AUR62008451 Chenopodium quinoa HOM05D004971 ORTHO05D006289 1.2e-70 271.2 249 55.4
HPP92_012921 Vanilla planifolia HOM05D004971 ORTHO05D006289 1.2e-70 271.2 286 45.8
SHI02711 Sapria himalayana HOM05D004971 ORTHO05D006289 4.6e-70 269.2 286 50.7
CsaV3_1G020790 Cucumis sativus L. HOM05D004971 ORTHO05D006289 1.5e-68 264.2 282 51.4
Ciclev10009268m.g Citrus clementina HOM05D004971 ORTHO05D006289 5.6e-68 262.3 269 50.2
Cfa003218 Carpinus fangiana HOM05D001382 ORTHO05D001266 8.2e-67 258.5 223 58.3
DCAR_028679 Daucus carota HOM05D004971 ORTHO05D006289 1.2e-65 254.6 272 50.7
MELO3C024707.2 Cucumis melo HOM05D004971 ORTHO05D006289 1.5e-65 254.2 262 50.8
Sed0000382 Sechium edule HOM05D004971 ORTHO05D006289 2.0e-65 253.8 261 49.8
Manes.16G112100 Manihot esculenta HOM05D004971 ORTHO05D006289 1.4e-63 247.7 214 57.9
Nitab4.5_0002165g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.6e-62 244.2 285 48.1
AagrBONN_evm.TU.Sc2ySwM_117.3390 Anthoceros agrestis HOM05D004971 ORTHO05D006289 1.3e-61 241.1 269 43.1
CSS0049746 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 5.1e-61 239.2 195 59.0
SEGI_33858 Sequoiadendron giganteum HOM05D004971 ORTHO05D006289 7.7e-57 225.3 342 37.1
Lalb_Chr14g0371731 Lupinus albus HOM05D004971 ORTHO05D006289 6.5e-56 222.2 255 43.9
SMO232G0003 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 6.5e-56 222.2 275 41.8
CDE11G0552 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 3.2e-55 219.9 265 44.9
SMO241G0030 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 5.5e-55 219.2 271 41.7
Mapoly0002s0233 Marchantia polymorpha HOM05D004971 ORTHO05D006289 9.4e-55 218.4 326 36.8
Thhalv10006518m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 6.1e-54 215.7 214 50.9
Thhalv10027230m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 6.1e-54 215.7 214 50.9
Thhalv10026861m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 6.3e-51 205.7 214 49.5
Thhalv10027410m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 8.2e-51 205.3 214 49.5
Duzib150G1337 Durio zibethinus HOM05D004971 ORTHO05D006289 6.9e-50 202.2 195 51.8
Pp3c17_15270 Physcomitrium patens HOM05D004971 ORTHO05D006289 5.0e-48 196.1 290 37.6
Thhalv10027350m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 2.5e-47 193.7 220 46.8
Lalb_Chr24g0397391 Lupinus albus HOM05D004971 ORTHO05D006289 1.4e-42 177.9 186 46.2
MD02G1058100 Malus domestica HOM05D004971 ORTHO05D006289 1.4e-42 177.9 244 39.3
ATR0315G075 Amborella trichopoda HOM05D004971 ORTHO05D006289 5.9e-41 172.6 207 49.3
MCO09G154 Micromonas commoda HOM05D004971 ORTHO05D006289 8.0e-38 162.2 283 35.0
CDE05G3470 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 4.4e-36 156.4 123 61.0
Ca_17315_v3 Cicer arietinum L. HOM05D004971 ORTHO05D006289 4.4e-36 156.4 171 47.4
CBR_g687 Chara braunii HOM05D004971 ORTHO05D006289 8.2e-35 152.1 450 27.8
EL10Ac8g18422 Beta vulgaris HOM05D004971 ORTHO05D006289 1.2e-33 148.3 146 52.7
Zm00001eb198370 Zea mays HOM05D004971 ORTHO05D006289 2.0e-33 147.5 143 51.0
Cre15.g636450 Chlamydomonas reinhardtii HOM05D004971 ORTHO05D006289 9.4e-31 138.7 381 28.6
Haze_02526 Corylus avellana HOM05D004971 ORTHO05D006289 1.2e-28 131.7 178 44.9
PRCOL_00000240 Prasinoderma coloniale HOM05D004971 ORTHO05D006289 1.3e-27 128.3 315 29.8
Lj4g0009518 Lotus japonicus HOM05D004971 ORTHO05D006289 6.3e-27 125.9 100 59.0
CSS0032398 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 3.5e-25 120.2 64 81.2
Haze_02523 Corylus avellana HOM05D004971 ORTHO05D006289 3.5e-25 120.2 172 44.2
arahy.Tifrunner.gnm1.ann1.D57MTL Arachis hypogaea HOM05D004971 ORTHO05D006289 2.5e-23 114.0 140 43.6
MBI04_g02609_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D000022 3.2e-23 113.6 141 47.5
Cpa.g.sc40.24 Carica papaya HOM05D004971 ORTHO05D006289 4.4e-20 103.2 53 77.4
arahy.Tifrunner.gnm1.ann1.2J0XRF Arachis hypogaea HOM05D004971 ORTHO05D006289 4.8e-19 99.8 140 37.1
Nitab4.5_0002165g0090 Nicotiana tabacum HOM05D004971 ORTHO05D006289 2.0e-17 94.4 57 70.2
Actinidia07401 Actinidia chinensis HOM05D004971 ORTHO05D006289 2.7e-17 94.0 57 71.9
MBI19_g42779_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 2.9e-16 90.5 166 37.3
MBI19_g24589_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 5.0e-16 89.7 195 35.9
Nitab4.5_0001706g0070 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.1e-15 88.6 99 46.5
Lalb_Chr24g0397371 Lupinus albus HOM05D004971 ORTHO05D006289 2.8e-14 84.0 122 36.9
MBI19_g24592_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 1.3e-08 65.1 38 63.2
FvH4_7g02480 Fragaria vesca HOM05D004971 ORTHO05D022553 7.3e-07 59.3 38 57.9
FvH4_7g02600 Fragaria vesca HOM05D004971 ORTHO05D022553 7.3e-07 59.3 38 57.9


User provided reference genes

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