Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold22G09852 Striga asiatica HOM05D005110 ORTHO05D006074 1.3e-96 356.3 173 100.0
MSTRG.21034 Avicennia marina HOM05D005110 ORTHO05D006074 1.9e-58 229.6 177 63.8
Migut.D02434 Erythranthe guttata HOM05D005110 ORTHO05D006074 7.1e-58 227.6 170 60.6
MSTRG.18766 Avicennia marina HOM05D005110 ORTHO05D006074 1.2e-57 226.9 177 62.7
SalBow6G3038 Salvia bowleyana HOM05D005110 ORTHO05D006074 4.3e-55 218.4 174 60.9
Oeu035569.1 Olea europaea HOM05D005110 ORTHO05D006074 1.6e-49 199.9 175 55.4
Dinv22825 Davidia involucrata HOM05D005110 ORTHO05D006074 6.1e-49 198.0 178 55.6
Oeu027156.1 Olea europaea HOM05D005110 ORTHO05D006074 1.0e-48 197.2 180 57.8
Oeu002365.1 Olea europaea HOM05D005110 ORTHO05D006074 2.5e-47 192.6 180 55.6
Dinv42535 Davidia involucrata HOM05D005110 ORTHO05D006074 5.7e-47 191.4 178 53.9
Actinidia37076 Actinidia chinensis HOM05D005110 ORTHO05D006074 1.3e-46 190.3 174 55.7
GSVIVG01036094001 Vitis vinifera HOM05D005110 ORTHO05D006074 2.2e-46 189.5 177 55.9
MSTRG.17701 Avicennia marina HOM05D005110 ORTHO05D006074 1.1e-45 187.2 172 56.4
DCAR_010338 Daucus carota HOM05D005110 ORTHO05D006074 4.1e-45 185.3 178 50.6
CANSAT54G0919 Cannabis sativa HOM05D005110 ORTHO05D006074 9.0e-45 184.1 176 53.4
Hma1.2p1_0587F.1_g184070 Hydrangea macrophylla HOM05D005110 ORTHO05D006074 2.0e-44 183.0 175 53.1
MD11G1167600 Malus domestica HOM05D005110 ORTHO05D006074 5.9e-44 181.4 178 54.5
Cc01_g08910 Coffea canephora HOM05D005110 ORTHO05D006074 2.2e-43 179.5 177 50.3
FAN11G1413 Fragaria x ananassa HOM05D005110 ORTHO05D006074 2.9e-43 179.1 174 54.0
vmacro03324 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 3.8e-43 178.7 185 52.4
TWI79G0870 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 5.0e-43 178.3 178 51.7
FvH4_3g25370 Fragaria vesca HOM05D005110 ORTHO05D006074 8.5e-43 177.6 174 54.0
FAN21G3897 Fragaria x ananassa HOM05D005110 ORTHO05D006074 8.5e-43 177.6 174 54.0
MD03G1148100 Malus domestica HOM05D005110 ORTHO05D006074 8.5e-43 177.6 179 53.1
FAN25G3715 Fragaria x ananassa HOM05D005110 ORTHO05D006074 2.5e-42 176.0 174 54.0
QL01p011992 Quercus lobata HOM05D005110 ORTHO05D006074 3.2e-42 175.6 178 52.2
Atru.chr3.3190 Acer truncatum HOM05D005110 ORTHO05D006074 4.2e-42 175.3 182 51.1
Duzib168G1438 Durio zibethinus HOM05D005110 ORTHO05D006074 4.2e-42 175.3 180 53.3
Glyma.12G091100 Glycine max HOM05D005110 ORTHO05D006074 5.5e-42 174.9 175 52.0
CSS0022586 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 9.4e-42 174.1 180 51.7
Rhsim01G0204600 Rhododendron simsii HOM05D005110 ORTHO05D006074 9.4e-42 174.1 178 52.8
Actinidia25117 Actinidia chinensis HOM05D005110 ORTHO05D006074 1.2e-41 173.7 175 51.4
Cfa009996 Carpinus fangiana HOM05D005110 ORTHO05D006074 1.2e-41 173.7 181 51.9
COL.COLO4_34021 Corchorus olitorius HOM05D005110 ORTHO05D006074 1.2e-41 173.7 178 50.6
Duzib170G1118 Durio zibethinus HOM05D005110 ORTHO05D006074 1.2e-41 173.7 179 51.4
ECA248G3565 Erigeron canadensis HOM05D005110 ORTHO05D006074 1.2e-41 173.7 174 51.7
Ciclev10029378m.g Citrus clementina HOM05D005110 ORTHO05D006074 4.6e-41 171.8 179 52.0
Duzib150G1383 Durio zibethinus HOM05D005110 ORTHO05D006074 4.6e-41 171.8 178 50.6
Lj3g0002892 Lotus japonicus HOM05D005110 ORTHO05D006074 6.1e-41 171.4 175 50.3
Phvul.011G095400 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 6.1e-41 171.4 175 52.6
DCAR_012208 Daucus carota HOM05D005110 ORTHO05D006074 7.9e-41 171.0 178 47.2
HanXRQChr01g0024471 Helianthus annuus HOM05D005110 ORTHO05D006074 2.3e-40 169.5 183 50.8
Rhsim13G0112900 Rhododendron simsii HOM05D005110 ORTHO05D006074 3.9e-40 168.7 186 51.6
Thecc.09G280200 Theobroma cacao HOM05D005110 ORTHO05D006074 3.9e-40 168.7 178 49.4
Prupe.6G134300 Prunus persica HOM05D005110 ORTHO05D006074 5.1e-40 168.3 179 53.6
Gohir.A05G079700 Gossypium hirsutum HOM05D005110 ORTHO05D006074 6.7e-40 167.9 174 50.0
Gohir.D05G082600 Gossypium hirsutum HOM05D005110 ORTHO05D006074 6.7e-40 167.9 180 48.9
Gorai.009G084200 Gossypium raimondii HOM05D005110 ORTHO05D006074 6.7e-40 167.9 180 48.9
HanXRQChr13g0426031 Helianthus annuus HOM05D005110 ORTHO05D006074 6.7e-40 167.9 184 50.5
Potri.009G019300 Populus trichocarpa HOM05D005110 ORTHO05D006074 6.7e-40 167.9 175 49.7
vmacro14345 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 8.8e-40 167.5 185 48.1
CAN.G919.35 Capsicum annuum HOM05D005110 ORTHO05D006074 1.1e-39 167.2 183 51.4
VMungo1127G0906 Vigna mungo HOM05D005110 ORTHO05D006074 1.5e-39 166.8 169 50.9
Glyma.11G182100 Glycine max HOM05D005110 ORTHO05D006074 2.0e-39 166.4 176 50.6
Glyma.13G315400 Glycine max HOM05D005110 ORTHO05D006074 2.5e-39 166.0 178 50.6
QL01p011978 Quercus lobata HOM05D005110 ORTHO05D006074 2.5e-39 166.0 179 52.0
Peaxi162Scf00091g00622 Petunia axillaris HOM05D005110 ORTHO05D006074 3.3e-39 165.6 174 51.1
CiPaw.13G134200 Carya illinoinensis HOM05D005110 ORTHO05D006074 5.7e-39 164.9 181 48.1
Lalb_Chr03g0028181 Lupinus albus HOM05D005110 ORTHO05D006074 5.7e-39 164.9 175 50.9
TWI31G0848 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 7.4e-39 164.5 179 50.8
Manes.11G163300 Manihot esculenta HOM05D005110 ORTHO05D006074 9.7e-39 164.1 177 51.4
Solyc06g074260.4 Solanum lycopersicum HOM05D005110 ORTHO05D006074 1.3e-38 163.7 181 48.6
Medtr2g086680 Medicago truncatula HOM05D005110 ORTHO05D006074 2.2e-38 162.9 175 46.3
PGSC0003DMG400005884 Solanum tuberosum HOM05D005110 ORTHO05D006074 2.2e-38 162.9 182 48.4
Lalb_Chr01g0004911 Lupinus albus HOM05D005110 ORTHO05D006074 3.7e-38 162.2 175 49.1
Lalb_Chr19g0136401 Lupinus albus HOM05D005110 ORTHO05D006074 3.7e-38 162.2 173 50.3
TPR.G17227 Trifolium pratense HOM05D005110 ORTHO05D006074 1.1e-37 160.6 175 48.0
VMungo1080G1295 Vigna mungo HOM05D005110 ORTHO05D006074 1.1e-37 160.6 175 46.3
arahy.Tifrunner.gnm1.ann1.EYNG7S Arachis hypogaea HOM05D005110 ORTHO05D006074 1.4e-37 160.2 175 49.7
Sopen06g030680 Solanum pennellii HOM05D005110 ORTHO05D006074 1.4e-37 160.2 181 47.5
arahy.Tifrunner.gnm1.ann1.XFIF97 Arachis hypogaea HOM05D005110 ORTHO05D006074 1.8e-37 159.8 175 50.3
Sc06g0008710 Simmondsia chinensis HOM05D005110 ORTHO05D006074 1.8e-37 159.8 157 51.0
Lj3g0016581 Lotus japonicus HOM05D005110 ORTHO05D006074 2.4e-37 159.5 179 49.7
Nitab4.5_0005472g0010 Nicotiana tabacum HOM05D005110 ORTHO05D006074 2.4e-37 159.5 169 49.1
Psat5g259000 Pisum sativum HOM05D005110 ORTHO05D006074 4.1e-37 158.7 175 44.6
Phvul.005G122600 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 5.3e-37 158.3 178 47.2
Cpa.g.sc195.13 Carica papaya HOM05D005110 ORTHO05D006074 6.9e-37 157.9 177 50.8
MBI17_g32417_MAGBIO Magnolia biondii HOM05D005110 ORTHO05D006074 1.2e-36 157.1 181 49.2
Sabra09G0012800 Salix brachista HOM05D005110 ORTHO05D006074 1.2e-36 157.1 176 47.7
Lsat_1_v5_gn_1_59041 Lactuca sativa HOM05D005110 ORTHO05D006074 1.5e-36 156.8 179 47.5
Nn2g14215 Nelumbo nucifera HOM05D005110 ORTHO05D006074 2.6e-36 156.0 183 46.4
Psat7g142160 Pisum sativum HOM05D005110 ORTHO05D006074 4.5e-36 155.2 175 46.9
Hund18768 Selenicereus undatus HOM05D005110 ORTHO05D006074 4.5e-36 155.2 170 49.4
PGR102G3267 Punica granatum HOM05D005110 ORTHO05D006074 5.9e-36 154.8 180 48.9
CiPaw.14G098700 Carya illinoinensis HOM05D005110 ORTHO05D006074 1.0e-35 154.1 176 45.5
Eucgr.B03836 Eucalyptus grandis HOM05D005110 ORTHO05D006074 1.0e-35 154.1 192 44.8
Nitab4.5_0000937g0070 Nicotiana tabacum HOM05D005110 ORTHO05D006074 1.3e-35 153.7 168 48.2
CSS0002660 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 5.0e-35 151.8 173 46.2
Sed0010097 Sechium edule HOM05D005110 ORTHO05D006074 6.5e-35 151.4 188 45.2
ClCG02G022270 Citrullus lanatus HOM05D005110 ORTHO05D006074 1.9e-34 149.8 189 46.0
unitig_746.g26607 Utricularia gibba HOM05D005110 ORTHO05D006074 2.1e-33 146.4 166 42.2
CsaV3_6G038400 Cucumis sativus L. HOM05D005110 ORTHO05D006074 1.4e-32 143.7 161 48.4
ClCG01G012070 Citrullus lanatus HOM05D005110 ORTHO05D006074 2.3e-32 142.9 179 44.7
Aqoxy4G02728 Aquilegia oxysepala HOM05D005110 ORTHO05D006074 6.7e-32 141.4 183 44.3
arahy.Tifrunner.gnm1.ann1.GADS7N Arachis hypogaea HOM05D005110 ORTHO05D006074 1.1e-31 140.6 173 45.7
MELO3C014504.2 Cucumis melo HOM05D005110 ORTHO05D006074 2.6e-31 139.4 161 46.6
arahy.Tifrunner.gnm1.ann1.NUG06Z Arachis hypogaea HOM05D005110 ORTHO05D006074 3.3e-31 139.0 178 44.4
MELO3C004693.2 Cucumis melo HOM05D005110 ORTHO05D006074 8.2e-30 134.4 181 42.0
CsaV3_1G014930 Cucumis sativus L. HOM05D005110 ORTHO05D006074 1.1e-29 134.0 177 38.4
THA.LOC104800521 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 2.4e-29 132.9 180 44.4
CsaV3_1G015850 Cucumis sativus L. HOM05D005110 ORTHO05D006074 5.3e-29 131.7 165 40.0
A07p18150 Brassica napus HOM05D005110 ORTHO05D006074 4.5e-28 128.6 175 42.3
BraA07t29533Z Brassica rapa HOM05D005110 ORTHO05D006074 4.5e-28 128.6 175 42.3
BcaB02g10088 Brassica carinata HOM05D005110 ORTHO05D006074 7.7e-28 127.9 175 42.3
Thhalv10002110m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 1.0e-27 127.5 175 41.7
CARHR119990 Cardamine hirsuta HOM05D005110 ORTHO05D006074 1.3e-27 127.1 174 42.0
QL01p011973 Quercus lobata HOM05D005110 ORTHO05D006074 1.7e-27 126.7 178 41.6
Sp4g10180 Schrenkiella parvula HOM05D005110 ORTHO05D006074 1.7e-27 126.7 175 41.1
C04p24220 Brassica napus HOM05D005110 ORTHO05D006074 2.2e-27 126.3 175 41.7
BolC4t23920H Brassica oleracea HOM05D005110 ORTHO05D006074 2.2e-27 126.3 175 41.7
BcaC02g10869 Brassica carinata HOM05D005110 ORTHO05D006074 1.1e-26 124.0 175 41.1
AT2G27385 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 1.9e-26 123.2 174 40.2
Carub.0004s0802 Capsella rubella HOM05D005110 ORTHO05D006074 9.4e-26 120.9 176 40.9
AL4G21340 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 1.2e-25 120.6 174 40.2
TAR623G0362 Trochodendron aralioides HOM05D005110 ORTHO05D006074 1.6e-25 120.2 134 47.8
Hund20930 Selenicereus undatus HOM05D005110 ORTHO05D006074 2.7e-25 119.4 136 47.1
Lj2P968T16 Lonicera japonica HOM05D005110 ORTHO05D006074 2.3e-24 116.3 123 49.6
THA.LOC104810920 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 6.7e-24 114.8 174 40.8
Carub.0006s2017 Capsella rubella HOM05D005110 ORTHO05D006074 8.8e-24 114.4 179 38.5
BcaB05g22726 Brassica carinata HOM05D005110 ORTHO05D006074 2.6e-23 112.8 179 39.7
CARHR191100 Cardamine hirsuta HOM05D005110 ORTHO05D006074 7.5e-23 111.3 177 38.4
TAR369G1010 Trochodendron aralioides HOM05D005110 ORTHO05D006074 9.7e-23 110.9 126 49.2
BcaB08g36432 Brassica carinata HOM05D000477 ORTHO05D006074 2.2e-22 109.8 173 37.6
C02p10870 Brassica napus HOM05D005110 ORTHO05D006074 2.8e-22 109.4 178 34.8
Thhalv10014830m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 3.7e-22 109.0 179 36.3
AT5G22430 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 4.8e-22 108.6 177 36.7
AL6G33450 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 8.2e-22 107.8 177 36.2
Sp6g22820 Schrenkiella parvula HOM05D005110 ORTHO05D006074 4.1e-21 105.5 179 35.2
BNapus_Darmor_BZH_scaffold_38p00660 Brassica napus HOM05D005110 ORTHO05D006074 3.5e-20 102.4 179 34.1
BraA02t05659Z Brassica rapa HOM05D005110 ORTHO05D006074 1.0e-19 100.9 179 34.1
Aa31LG1G13130 Aethionema arabicum HOM05D005110 ORTHO05D006074 1.3e-19 100.5 177 35.6
BolC2t07157H Brassica oleracea HOM05D005110 ORTHO05D006074 1.1e-18 97.4 179 33.5
Actinidia35470 Actinidia chinensis HOM05D005110 ORTHO05D006074 3.2e-18 95.9 99 50.5
Manes.04G002101 Manihot esculenta HOM05D005110 ORTHO05D006074 1.6e-17 93.6 109 42.2
Haze_23356 Corylus avellana HOM05D005110 ORTHO05D006074 1.0e-16 90.9 103 46.6
ATR0580G107 Amborella trichopoda HOM05D005110 ORTHO05D006074 1.4e-16 90.5 175 33.7
BcaC03g13883 Brassica carinata HOM05D005110 ORTHO05D006074 2.3e-16 89.7 154 32.5
vmacro14354 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 2.3e-16 89.7 104 43.3
HPP92_011908 Vanilla planifolia HOM05D005110 ORTHO05D006074 4.0e-16 89.0 116 43.1
HPP92_005471 Vanilla planifolia HOM05D005110 ORTHO05D006074 9.1e-13 77.8 203 31.0
BolC9t58287H Brassica oleracea HOM05D005110 ORTHO05D006074 3.8e-11 72.4 164 29.9
C09p54160 Brassica napus HOM05D005110 ORTHO05D006074 1.5e-10 70.5 162 31.5
Zm00001eb242880 Zea mays HOM05D005110 ORTHO05D006074 6.1e-09 65.1 205 27.8
TPR.G4458 Trifolium pratense HOM05D005110 ORTHO05D006074 1.8e-08 63.5 69 43.5
unitig_0.g1474 Utricularia gibba HOM05D005110 ORTHO05D006074 2.0e-07 60.1 65 41.5


User provided reference genes

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