Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold22G09799 Striga asiatica HOM05D003570 ORTHO05D004207 0.0e+00 1114.4 620 100.0
MSTRG.553 Avicennia marina HOM05D003570 ORTHO05D004207 3.2e-217 758.8 629 71.7
Migut.K00625 Erythranthe guttata HOM05D003570 ORTHO05D004207 1.8e-191 673.3 635 64.4
Oeu038645.2 Olea europaea HOM05D003570 ORTHO05D004207 2.6e-166 589.7 674 57.0
Nitab4.5_0002373g0110 Nicotiana tabacum HOM05D003570 ORTHO05D004207 9.2e-140 501.5 636 46.5
Peaxi162Scf00128g00550 Petunia axillaris HOM05D003570 ORTHO05D004207 7.8e-139 498.4 630 52.2
Sopen05g008710 Solanum pennellii HOM05D003570 ORTHO05D004207 5.6e-137 492.3 636 50.2
Actinidia37450 Actinidia chinensis HOM05D003570 ORTHO05D004207 8.0e-136 488.4 641 48.4
CAN.G1572.8 Capsicum annuum HOM05D003570 ORTHO05D004207 3.1e-135 486.5 630 50.0
Thecc.02G265200 Theobroma cacao HOM05D003570 ORTHO05D004207 2.9e-133 479.9 635 49.9
HanXRQChr08g0208421 Helianthus annuus HOM05D003570 ORTHO05D004207 4.9e-133 479.2 626 47.4
Gorai.012G173500 Gossypium raimondii HOM05D003570 ORTHO05D004207 1.3e-130 471.1 636 48.1
Gohir.D04G180400 Gossypium hirsutum HOM05D003570 ORTHO05D004207 5.0e-130 469.2 636 46.9
GSVIVG01000572001 Vitis vinifera HOM05D003570 ORTHO05D004207 4.0e-127 459.5 649 43.0
Ciclev10030923m.g Citrus clementina HOM05D003570 ORTHO05D004207 8.9e-127 458.4 630 46.7
COL.COLO4_23499 Corchorus olitorius HOM05D003570 ORTHO05D004207 1.5e-126 457.6 636 45.6
Nitab4.5_0004117g0010 Nicotiana tabacum HOM05D003570 ORTHO05D004207 4.4e-126 456.1 641 45.7
Duzib248G0757 Durio zibethinus HOM05D003570 ORTHO05D004207 7.5e-126 455.3 635 45.8
Gohir.A04G137200 Gossypium hirsutum HOM05D003570 ORTHO05D004207 2.9e-125 453.4 639 46.6
Sc04g0009680 Simmondsia chinensis HOM05D003570 ORTHO05D004207 2.9e-125 453.4 633 47.1
Haze_12279 Corylus avellana HOM05D003570 ORTHO05D004207 1.6e-123 447.6 642 46.3
Nitab4.5_0001978g0070 Nicotiana tabacum HOM05D003570 ORTHO05D004207 3.5e-123 446.4 682 41.3
Lsat_1_v5_gn_0_32260 Lactuca sativa HOM05D003570 ORTHO05D004207 3.9e-122 443.0 629 46.6
Phvul.001G256000 Phaseolus vulgaris HOM05D003570 ORTHO05D004207 5.6e-121 439.1 644 47.2
CiPaw.06G064800 Carya illinoinensis HOM05D003570 ORTHO05D004207 4.7e-120 436.0 632 46.7
VMungo1383G2895 Vigna mungo HOM05D003570 ORTHO05D004207 1.1e-119 434.9 633 46.6
DCAR_026498 Daucus carota HOM05D003570 ORTHO05D004207 1.4e-119 434.5 640 47.0
Manes.13G020900 Manihot esculenta HOM05D003570 ORTHO05D004207 1.4e-119 434.5 637 46.0
TAR622G0746 Trochodendron aralioides HOM05D003570 ORTHO05D004207 2.3e-119 433.7 639 44.6
Cc11_g16040 Coffea canephora HOM05D003570 ORTHO05D004207 4.0e-119 433.0 625 47.2
Potri.008G183500 Populus trichocarpa HOM05D003570 ORTHO05D004207 5.2e-119 432.6 638 45.9
Psat5g092360 Pisum sativum HOM05D003570 ORTHO05D004207 2.6e-118 430.3 640 44.8
CANSAT11G1164 Cannabis sativa HOM05D003570 ORTHO05D004207 7.6e-118 428.7 635 43.8
arahy.Tifrunner.gnm1.ann1.8897EQ Arachis hypogaea HOM05D003570 ORTHO05D004207 9.9e-118 428.3 635 44.4
TWI36G1196 Tripterygium wilfordii HOM05D003570 ORTHO05D004207 2.2e-117 427.2 630 42.7
Ca_25131_v3 Cicer arietinum L. HOM05D001269 ORTHO05D001083 2.9e-117 426.8 623 45.1
arahy.Tifrunner.gnm1.ann1.I1BHDP Arachis hypogaea HOM05D003570 ORTHO05D004207 1.9e-116 424.1 644 43.8
Prupe.1G241900 Prunus persica HOM05D003570 ORTHO05D004207 2.4e-116 423.7 630 44.8
Eucgr.B03244 Eucalyptus grandis HOM05D003570 ORTHO05D004207 3.2e-116 423.3 627 43.9
RcHm_v2.0_Chr4g0432651 Rosa chinensis HOM05D003570 ORTHO05D004207 4.1e-116 422.9 630 47.0
THA.LOC104805269 Tarenaya hassleriana HOM05D003570 ORTHO05D004207 7.1e-116 422.2 635 41.6
Glyma.11G244100 Glycine max HOM05D003570 ORTHO05D004207 3.5e-115 419.9 630 44.3
Cpa.g.sc13.88 Carica papaya HOM05D003570 ORTHO05D004207 7.8e-115 418.7 664 40.1
MBI04_g13681_MAGBIO Magnolia biondii HOM05D003570 ORTHO05D004207 1.7e-114 417.5 636 45.0
PGR102G1250 Punica granatum HOM05D003570 ORTHO05D004207 1.7e-114 417.5 633 44.1
Lj6g0027950 Lotus japonicus HOM05D003570 ORTHO05D004207 3.6e-112 409.8 645 46.0
Nn4g22548 Nelumbo nucifera HOM05D003570 ORTHO05D004207 1.4e-111 407.9 644 39.1
Lj4g0018208 Lotus japonicus HOM05D003570 ORTHO05D004207 1.8e-111 407.5 643 45.7
ECA233G5166 Erigeron canadensis HOM05D002671 ORTHO05D002985 4.0e-111 406.4 556 48.0
Lj6A815G40 Lonicera japonica HOM05D003570 ORTHO05D004207 5.2e-111 406.0 464 51.1
FAN12G2286 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.5e-110 404.4 630 44.1
FvH4_4g25360 Fragaria vesca HOM05D003570 ORTHO05D004207 4.4e-110 402.9 632 44.5
Medtr3g086460 Medicago truncatula HOM05D003570 ORTHO05D004207 5.8e-110 402.5 634 43.5
FAN22G0389 Fragaria x ananassa HOM05D003570 ORTHO05D004207 9.9e-110 401.7 630 44.0
FAN07G1326 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.1e-108 398.3 652 44.5
PSO063G4933 Papaver somniferum HOM05D003570 ORTHO05D004207 3.2e-108 396.7 650 43.4
Lalb_Chr08g0230861 Lupinus albus HOM05D003570 ORTHO05D004207 1.2e-107 394.8 553 49.2
AUR62024231 Chenopodium quinoa HOM05D003570 ORTHO05D004207 3.5e-107 393.3 652 40.6
TPR.G35967 Trifolium pratense HOM05D003570 ORTHO05D004207 1.3e-106 391.3 629 43.9
Oeu038646.1 Olea europaea HOM05D003570 ORTHO05D004207 3.9e-106 389.8 451 53.2
PSO339G2835 Papaver somniferum HOM05D003570 ORTHO05D004207 6.6e-106 389.0 647 43.4
CsaV3_5G030790 Cucumis sativus L. HOM05D003570 ORTHO05D004207 3.1e-103 380.2 642 39.4
ClCG05G026050 Citrullus lanatus HOM05D003570 ORTHO05D004207 9.9e-102 375.2 637 41.6
QL03p056574 Quercus lobata HOM05D003570 ORTHO05D004207 8.4e-101 372.1 613 43.2
Atru.chr11.2174 Acer truncatum HOM05D003570 ORTHO05D004207 1.1e-100 371.7 637 41.1
Aqoxy7G03799 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 1.9e-100 370.9 643 41.8
FAN17G0862 Fragaria x ananassa HOM05D003570 ORTHO05D004207 5.1e-98 362.8 636 38.4
MD13G1104500 Malus domestica HOM05D003570 ORTHO05D004207 8.7e-98 362.1 558 45.2
QL03p056953 Quercus lobata HOM05D003570 ORTHO05D004207 6.2e-96 355.9 619 41.7
MELO3C011924.2 Cucumis melo HOM05D003570 ORTHO05D004207 1.4e-95 354.8 661 38.6
Sed0006332 Sechium edule HOM05D003570 ORTHO05D004207 5.3e-95 352.8 555 44.1
AUR62005511 Chenopodium quinoa HOM05D003570 ORTHO05D004207 6.4e-93 345.9 622 37.6
COL.COLO4_27904 Corchorus olitorius HOM05D003570 ORTHO05D004207 3.2e-92 343.6 667 35.5
AL1G24790 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 6.7e-90 335.9 625 40.6
ATR0824G009 Amborella trichopoda HOM05D003570 ORTHO05D004207 1.1e-89 335.1 625 38.6
Lj3A151T25 Lonicera japonica HOM05D003570 ORTHO05D004207 4.8e-88 329.7 336 49.7
Carub.0001s1286 Capsella rubella HOM05D003570 ORTHO05D004207 2.0e-86 324.3 629 37.7
AT1G13120 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 2.6e-86 323.9 628 38.5
CARHR013490 Cardamine hirsuta HOM05D003570 ORTHO05D004207 4.5e-86 323.2 628 39.8
BraA09t41684Z Brassica rapa HOM05D003570 ORTHO05D004207 5.8e-86 322.8 629 36.7
BolC8t52217H Brassica oleracea HOM05D003570 ORTHO05D004207 6.5e-85 319.3 624 39.1
C08p46780 Brassica napus HOM05D003570 ORTHO05D004207 5.5e-84 316.2 620 40.6
EL10As2g23162 Beta vulgaris HOM05D003570 ORTHO05D004207 7.9e-83 312.4 482 43.4
A09p63350 Brassica napus HOM05D003570 ORTHO05D004207 1.8e-82 311.2 616 40.4
BcaC07g41664 Brassica carinata HOM05D003570 ORTHO05D004207 2.5e-81 307.4 612 39.2
PSO063G3251 Papaver somniferum HOM05D003570 ORTHO05D004207 1.3e-80 305.1 634 35.2
Thhalv10007079m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 2.1e-80 304.3 623 40.0
SEGI_05718 Sequoiadendron giganteum HOM05D003570 ORTHO05D004207 2.8e-80 303.9 636 37.4
PGSC0003DMG400016968 Solanum tuberosum HOM05D003570 ORTHO05D004207 2.6e-78 297.4 260 58.5
Os02g0596100 Oryza sativa ssp. japonica HOM05D003570 ORTHO05D004207 2.2e-77 294.3 634 38.2
vmacro17618 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 2.2e-77 294.3 537 42.1
Sp1g11650 Schrenkiella parvula HOM05D003570 ORTHO05D004207 9.3e-76 288.9 632 34.7
Hma1.2p1_1533F.1_g289360 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 2.1e-75 287.7 261 54.4
CiPaw.02G032100 Carya illinoinensis HOM05D003570 ORTHO05D004207 1.0e-74 285.4 625 40.2
PSO063G1535 Papaver somniferum HOM05D003570 ORTHO05D004207 2.3e-74 284.3 307 48.2
Aa31LG1G1680 Aethionema arabicum HOM05D003570 ORTHO05D004207 3.0e-74 283.9 624 35.4
PSO754G0035 Papaver somniferum HOM05D003570 ORTHO05D004207 1.1e-73 282.0 301 48.5
Rhsim12G0108000 Rhododendron simsii HOM05D003570 ORTHO05D004207 1.6e-72 278.1 262 55.3
SHI04269 Sapria himalayana HOM05D003570 ORTHO05D004207 2.2e-72 277.7 553 35.3
Sabra08G0139700 Salix brachista HOM05D003570 ORTHO05D004207 4.8e-72 276.6 343 43.4
Dinv15203 Davidia involucrata HOM05D003570 ORTHO05D004207 4.5e-70 270.0 220 60.9
Zm00001eb062020 Zea mays HOM05D003570 ORTHO05D004207 3.8e-69 266.9 556 36.3
Zm00001eb212370 Zea mays HOM05D003570 ORTHO05D004207 8.5e-69 265.8 536 38.8
Dinv11043 Davidia involucrata HOM05D003570 ORTHO05D004207 9.4e-68 262.3 453 40.8
vmacro16171 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 3.7e-64 250.4 239 55.2
Pp3c9_21420 Physcomitrium patens HOM05D003570 ORTHO05D004207 2.4e-63 247.7 647 33.8
Aqoxy5G03688 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 2.1e-59 234.6 236 48.7
AL6G47680 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 6.7e-58 229.6 566 32.9
Mapoly0004s0250 Marchantia polymorpha HOM05D003570 ORTHO05D004207 2.0e-57 228.0 609 35.0
Aqoxy1G03220 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 9.7e-57 225.7 308 41.6
Rhsim12G0107900 Rhododendron simsii HOM05D003570 ORTHO05D004207 1.1e-55 222.2 367 48.2
vmacro16173 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 5.9e-54 216.5 243 49.8
SMO367G0645 Selaginella moellendorffii HOM05D003570 ORTHO05D004207 1.9e-52 211.5 628 29.1
vmacro16170 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 8.0e-51 206.1 392 40.3
unitig_22.g6426 Utricularia gibba HOM05D003570 ORTHO05D004207 1.8e-50 204.9 175 55.4
CBR_g38118 Chara braunii HOM05D003570 ORTHO05D004207 2.2e-48 198.0 717 31.5
Nitab4.5_0000229g0040 Nicotiana tabacum HOM05D003570 ORTHO05D004207 1.8e-47 194.9 256 46.9
CSS0045431 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 9.4e-44 182.6 149 60.4
Haze_11814 Corylus avellana HOM05D001314 ORTHO05D001165 8.0e-43 179.5 197 48.7
Haze_20779 Corylus avellana HOM05D003570 ORTHO05D004207 1.8e-42 178.3 228 42.5
vmacro16172 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 2.3e-42 177.9 434 36.6
CDE06G1553 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 1.2e-41 175.6 172 47.1
Thhalv10001133m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 5.7e-41 173.3 475 31.8
Nitab4.5_0000229g0020 Nicotiana tabacum HOM05D003570 ORTHO05D004207 4.1e-39 167.2 236 43.6
Sopen04g013730 Solanum pennellii HOM05D003570 ORTHO05D004207 9.5e-36 156.0 110 64.5
CSS0031984 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 1.6e-30 138.7 230 37.8
AagrBONN_evm.TU.Sc2ySwM_362.2178 Anthoceros agrestis HOM05D003570 ORTHO05D004207 3.5e-30 137.5 173 37.6
FAN08G0154 Fragaria x ananassa HOM05D003570 ORTHO05D004207 5.9e-30 136.7 465 31.2
EL10Ac8g19584 Beta vulgaris HOM05D003570 ORTHO05D004207 7.8e-30 136.3 119 53.8
unitig_22.g6425 Utricularia gibba HOM05D003570 ORTHO05D004207 2.0e-25 121.7 189 43.9
Lj3A151T24 Lonicera japonica HOM05D003570 ORTHO05D004207 4.4e-25 120.6 179 44.1
A07p19900 Brassica napus HOM05D003570 ORTHO05D004207 1.3e-24 119.0 192 35.9
Aqoxy5G03687 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 2.2e-24 118.2 243 34.2
MCO05G059 Micromonas commoda HOM05D003570 ORTHO05D004207 1.4e-23 115.5 314 28.3
Hma1.2p1_0054F.1_g030990 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 1.8e-23 115.2 89 53.9
AL2G22720 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 2.7e-22 111.3 140 46.4
BolC4t26878H Brassica oleracea HOM05D003570 ORTHO05D004207 1.7e-21 108.6 198 34.8
FAN13G1935 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.5e-20 105.5 383 33.9
FAN08G3485 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.9e-20 105.1 125 46.4
Hma1.2p1_1533F.1_g289350 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 1.9e-20 105.1 151 43.7
Cre06.g300900 Chlamydomonas reinhardtii HOM05D003570 ORTHO05D004207 9.5e-20 102.8 305 26.6
A07p18160 Brassica napus HOM05D003570 ORTHO05D004207 1.2e-19 102.4 188 33.5
BraA01t00580Z Brassica rapa HOM05D003570 ORTHO05D004207 1.2e-19 102.4 188 33.5
AT4G05523 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 2.8e-19 101.3 204 33.8
BcaC02g08536 Brassica carinata HOM05D003570 ORTHO05D004207 3.1e-18 97.8 166 34.9
Medtr7g034350 Medicago truncatula HOM05D003570 ORTHO05D004207 3.1e-18 97.8 179 33.5
C04p53310 Brassica napus HOM05D003570 ORTHO05D004207 2.6e-17 94.7 203 34.0
TAR374G0522 Trochodendron aralioides HOM05D003570 ORTHO05D004207 3.4e-17 94.4 97 49.5
CDE06G0651 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 1.7e-16 92.0 270 32.2
AagrBONN_evm.TU.Sc2ySwM_344.4464 Anthoceros agrestis HOM05D003570 ORTHO05D004207 2.2e-16 91.7 356 34.8
PRCOL_00001147 Prasinoderma coloniale HOM05D003570 ORTHO05D004207 2.9e-16 91.3 319 27.0
BcaC06g34341 Brassica carinata HOM05D003570 ORTHO05D004207 8.3e-16 89.7 188 30.9
TAR374G0931 Trochodendron aralioides HOM05D003570 ORTHO05D004207 3.2e-15 87.8 109 50.5
BcaC05g25085 Brassica carinata HOM05D003570 ORTHO05D004207 1.6e-14 85.5 259 31.3
EL10As2g23164 Beta vulgaris HOM05D003570 ORTHO05D004207 3.5e-14 84.3 156 35.3
BolC5t29767H Brassica oleracea HOM05D003570 ORTHO05D004207 4.6e-14 84.0 295 27.1
BcaC05g25084 Brassica carinata HOM05D003570 ORTHO05D004207 3.9e-13 80.9 163 35.6
Actinidia15112 Actinidia chinensis HOM05D003570 ORTHO05D004207 8.6e-13 79.7 75 50.7
FvH4_5g15750 Fragaria vesca HOM05D003570 ORTHO05D004207 8.6e-13 79.7 60 63.3
AL2G22730 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 1.9e-12 78.6 110 38.2
C04p53220 Brassica napus HOM05D003570 ORTHO05D004207 1.9e-12 78.6 149 34.9
Glyma.18G013000 Glycine max HOM05D003570 ORTHO05D004207 2.1e-11 75.1 81 48.1
Actinidia15111 Actinidia chinensis HOM05D003570 ORTHO05D004207 3.6e-11 74.3 77 53.2
CAN.G294.19 Capsicum annuum HOM05D003570 ORTHO05D004207 6.2e-11 73.6 52 75.0
MD05G1151500 Malus domestica HOM05D003570 ORTHO05D004207 6.2e-11 73.6 49 69.4
Sp2g10400 Schrenkiella parvula HOM05D003570 ORTHO05D004207 2.0e-09 68.6 110 39.1
EL10Ac1g01653 Beta vulgaris HOM05D003570 ORTHO05D004207 7.5e-09 66.6 49 61.2
C03p39130 Brassica napus HOM05D003570 ORTHO05D004207 1.9e-07 62.0 100 34.0
Hund04894 Selenicereus undatus HOM05D003570 ORTHO05D004207 3.2e-07 61.2 64 46.9
C05p10220 Brassica napus HOM05D003570 ORTHO05D004207 7.1e-07 60.1 115 31.3
PSO063G3896 Papaver somniferum HOM05D003570 ORTHO05D004207 2.7e-06 58.2 239 27.6
C07p30170 Brassica napus HOM05D003570 ORTHO05D004207 3.5e-06 57.8 70 40.0
BcaC02g12092 Brassica carinata HOM05D003570 ORTHO05D004207 4.6e-06 57.4 51 47.1
C07p30160 Brassica napus HOM05D003570 ORTHO05D004207 4.6e-06 57.4 73 38.4


User provided reference genes

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