Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold22G09788 Striga asiatica HOM05D004037 ORTHO05D004744 1.2e-183 646.4 328 100.0
Migut.M01184 Erythranthe guttata HOM05D004037 ORTHO05D004744 2.7e-138 495.7 350 74.3
Migut.M00539 Erythranthe guttata HOM05D004037 ORTHO05D004744 5.0e-137 491.5 350 73.7
MSTRG.7308 Avicennia marina HOM05D004037 ORTHO05D004744 1.2e-135 486.9 350 74.3
SalBow8G4021 Salvia bowleyana HOM05D004037 ORTHO05D004744 4.9e-124 448.4 327 72.5
Oeu016121.2 Olea europaea HOM05D004037 ORTHO05D004744 4.3e-120 435.3 402 59.7
Cc03_g11000 Coffea canephora HOM05D004037 ORTHO05D004744 3.4e-117 425.6 350 65.4
PGSC0003DMG400028592 Solanum tuberosum HOM05D004037 ORTHO05D004744 1.4e-115 420.2 308 71.4
Solyc01g098380.4 Solanum lycopersicum HOM05D004037 ORTHO05D004744 1.9e-115 419.9 308 71.8
Nitab4.5_0000245g0260 Nicotiana tabacum HOM05D004037 ORTHO05D004744 7.8e-114 414.5 310 71.0
EL10Ac2g02395 Beta vulgaris HOM05D004037 ORTHO05D004744 3.0e-113 412.5 349 63.0
Ah.04g165670 Amaranthus hybridus HOM05D004037 ORTHO05D004744 1.1e-112 410.6 349 61.6
Hma1.2p1_0150F.1_g066850 Hydrangea macrophylla HOM05D004037 ORTHO05D004744 1.1e-112 410.6 354 61.0
TWI63G1426 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 1.1e-112 410.6 286 74.1
AUR62016240 Chenopodium quinoa HOM05D004037 ORTHO05D004744 2.5e-112 409.5 349 62.5
Hund02101 Selenicereus undatus HOM05D004037 ORTHO05D004744 4.3e-112 408.7 351 63.2
Ah.06g182910 Amaranthus hybridus HOM05D004037 ORTHO05D004744 5.6e-112 408.3 349 63.3
Gorai.001G202100 Gossypium raimondii HOM05D004037 ORTHO05D004744 9.5e-112 407.5 303 70.6
CAN.G134.227 Capsicum annuum HOM05D004037 ORTHO05D004744 1.2e-111 407.1 303 71.3
TAR636G3090 Trochodendron aralioides HOM05D004037 ORTHO05D004744 1.2e-111 407.1 353 62.9
CiPaw.01G202600 Carya illinoinensis HOM05D004037 ORTHO05D004744 1.6e-111 406.8 299 69.2
Gohir.D07G181200 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.8e-111 406.0 295 71.2
Lju470A2T32 Lonicera japonica HOM05D004037 ORTHO05D004744 2.8e-111 406.0 313 66.5
Actinidia39245 Actinidia chinensis HOM05D004037 ORTHO05D004744 3.6e-111 405.6 355 62.3
Glyma.07G060300 Glycine max HOM05D004037 ORTHO05D004744 4.7e-111 405.2 337 64.4
Sc06g0007930 Simmondsia chinensis HOM05D004037 ORTHO05D004744 4.7e-111 405.2 349 62.5
Gohir.A07G173900 Gossypium hirsutum HOM05D004037 ORTHO05D004744 8.1e-111 404.4 303 69.6
ClCG09G010780 Citrullus lanatus HOM05D004037 ORTHO05D004744 1.1e-110 404.1 321 66.4
Duzib093G0613 Durio zibethinus HOM05D004037 ORTHO05D004744 1.4e-110 403.7 306 68.0
TWI34G0723 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 1.4e-110 403.7 278 73.7
Hund23277 Selenicereus undatus HOM05D004037 ORTHO05D004744 3.1e-110 402.5 310 66.5
AUR62032781 Chenopodium quinoa HOM05D004037 ORTHO05D004744 4.0e-110 402.1 347 62.0
Lalb_Chr10g0100171 Lupinus albus HOM05D004037 ORTHO05D004744 4.0e-110 402.1 338 64.2
Gorai.007G347100 Gossypium raimondii HOM05D004037 ORTHO05D004744 6.8e-110 401.4 279 73.5
Thecc.05G172500 Theobroma cacao HOM05D004037 ORTHO05D004744 6.8e-110 401.4 300 69.0
Gohir.A11G301700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 8.9e-110 401.0 302 69.5
Glyma.16G028900 Glycine max HOM05D004037 ORTHO05D004744 1.5e-109 400.2 346 62.1
PGR042G3458 Punica granatum HOM05D004037 ORTHO05D004744 1.5e-109 400.2 314 67.2
MELO3C013171.2 Cucumis melo HOM05D004037 ORTHO05D004744 2.0e-109 399.8 321 65.1
MD15G1142500 Malus domestica HOM05D004037 ORTHO05D004744 2.0e-109 399.8 305 66.6
Sed0007542 Sechium edule HOM05D004037 ORTHO05D004744 2.0e-109 399.8 322 65.5
CANSAT01G0494 Cannabis sativa HOM05D004037 ORTHO05D004744 3.4e-109 399.1 298 70.8
Phvul.001G003100 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 4.4e-109 398.7 306 68.0
CsaV3_7G021780 Cucumis sativus L. HOM05D004037 ORTHO05D004744 7.6e-109 397.9 321 65.4
FvH4_2g00280 Fragaria vesca HOM05D004037 ORTHO05D004744 7.6e-109 397.9 306 68.0
HanXRQChr02g0032821 Helianthus annuus HOM05D004037 ORTHO05D004744 7.6e-109 397.9 350 61.1
Nn3g17600 Nelumbo nucifera HOM05D004037 ORTHO05D004744 1.3e-108 397.1 303 65.3
Ciclev10020914m.g Citrus clementina HOM05D004037 ORTHO05D004744 2.2e-108 396.4 299 69.2
vmacro05805 Vaccinium macrocarpon HOM05D004037 ORTHO05D004744 2.2e-108 396.4 272 74.3
COL.COLO4_19183 Corchorus olitorius HOM05D004037 ORTHO05D004744 2.9e-108 396.0 295 68.8
VMungo1383G1316 Vigna mungo HOM05D004037 ORTHO05D004744 2.9e-108 396.0 343 62.4
Aqoxy2G03110 Aquilegia oxysepala HOM05D004037 ORTHO05D004744 3.7e-108 395.6 280 70.0
Actinidia14627 Actinidia chinensis HOM05D004037 ORTHO05D004744 6.4e-108 394.8 309 66.0
DCAR_002599 Daucus carota HOM05D004037 ORTHO05D004744 6.4e-108 394.8 305 66.6
Sed0020358 Sechium edule HOM05D004037 ORTHO05D004744 6.4e-108 394.8 317 66.2
THA.LOC104804380 Tarenaya hassleriana HOM05D004037 ORTHO05D004744 6.4e-108 394.8 312 65.7
Lj6C283G4 Lonicera japonica HOM05D004037 ORTHO05D004744 8.4e-108 394.4 345 62.9
RcHm_v2.0_Chr2g0084421 Rosa chinensis HOM05D004037 ORTHO05D004744 8.4e-108 394.4 299 68.9
Atru.chr12.1746 Acer truncatum HOM05D004037 ORTHO05D004744 2.4e-107 392.9 302 68.2
Manes.05G207900 Manihot esculenta HOM05D004037 ORTHO05D004744 2.4e-107 392.9 284 69.7
PSO541G3258 Papaver somniferum HOM05D004037 ORTHO05D004744 3.2e-107 392.5 347 60.5
QL10p064641 Quercus lobata HOM05D004037 ORTHO05D004744 3.2e-107 392.5 278 71.2
Thecc.01G117800 Theobroma cacao HOM05D004037 ORTHO05D004744 4.1e-107 392.1 300 68.0
Gohir.D11G316700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 5.4e-107 391.7 274 73.0
FAN19G0379 Fragaria x ananassa HOM05D004037 ORTHO05D004744 7.1e-107 391.3 302 66.9
QL10p065764 Quercus lobata HOM05D004037 ORTHO05D004744 7.1e-107 391.3 278 70.9
GSVIVG01038260001 Vitis vinifera HOM05D004037 ORTHO05D004744 7.1e-107 391.3 299 67.2
AT3G59890 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 9.2e-107 391.0 313 65.2
Medtr8g028145 Medicago truncatula HOM05D004037 ORTHO05D004744 9.2e-107 391.0 327 64.8
PSO675G6334 Papaver somniferum HOM05D004037 ORTHO05D004744 1.2e-106 390.6 348 59.8
arahy.Tifrunner.gnm1.ann1.FPGW6Q Arachis hypogaea HOM05D004037 ORTHO05D004744 2.1e-106 389.8 345 61.2
ECA246G0926 Erigeron canadensis HOM05D004037 ORTHO05D004744 2.1e-106 389.8 356 60.7
Prupe.6G152500 Prunus persica HOM05D004037 ORTHO05D004744 2.1e-106 389.8 298 67.1
AL5G42050 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 2.7e-106 389.4 301 66.8
Sp4g26120 Schrenkiella parvula HOM05D004037 ORTHO05D004744 3.5e-106 389.0 299 66.6
Peaxi162Scf00071g00719 Petunia axillaris HOM05D004037 ORTHO05D004744 4.6e-106 388.7 265 75.8
Duzib128G0968 Durio zibethinus HOM05D004037 ORTHO05D004744 6.0e-106 388.3 298 67.4
MBI18_g24142_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 6.0e-106 388.3 292 66.8
Thhalv10006083m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 7.8e-106 387.9 298 66.8
Lsat_1_v5_gn_3_17660 Lactuca sativa HOM05D004037 ORTHO05D004744 7.8e-106 387.9 352 57.4
HPP92_022643 Vanilla planifolia HOM05D004037 ORTHO05D004744 7.8e-106 387.9 290 66.6
arahy.Tifrunner.gnm1.ann1.X3ZCQR Arachis hypogaea HOM05D004037 ORTHO05D004744 1.0e-105 387.5 345 60.9
Gohir.D11G317300 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.0e-105 387.5 295 68.8
Phvul.010G108900 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 1.0e-105 387.5 312 66.3
RcHm_v2.0_Chr2g0126841 Rosa chinensis HOM05D004037 ORTHO05D004744 1.0e-105 387.5 311 65.6
EL10Ac6g13735 Beta vulgaris HOM05D004037 ORTHO05D004744 1.3e-105 387.1 274 70.8
TPR.G5068 Trifolium pratense HOM05D004037 ORTHO05D004744 1.3e-105 387.1 296 68.2
Prupe.7G270700 Prunus persica HOM05D004037 ORTHO05D004744 1.7e-105 386.7 284 69.4
Lj3g0014190 Lotus japonicus HOM05D004037 ORTHO05D004744 2.3e-105 386.3 348 60.3
Psat4g089800 Pisum sativum HOM05D004037 ORTHO05D004744 5.1e-105 385.2 299 66.9
Aa31LG10G14130 Aethionema arabicum HOM05D004037 ORTHO05D004744 6.6e-105 384.8 294 67.3
CARHR170220 Cardamine hirsuta HOM05D004037 ORTHO05D004744 6.6e-105 384.8 341 61.0
FAN24G1991 Fragaria x ananassa HOM05D004037 ORTHO05D004744 6.6e-105 384.8 347 60.5
unitig_37.g12156 Utricularia gibba HOM05D004037 ORTHO05D004744 8.6e-105 384.4 319 64.9
Ca_23565_v3 Cicer arietinum L. HOM05D004037 ORTHO05D004744 1.5e-104 383.6 299 66.2
Aa31LG1G25710 Aethionema arabicum HOM05D004037 ORTHO05D004744 1.9e-104 383.3 317 63.7
AL4G42910 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 2.5e-104 382.9 299 65.9
CDE02G2837 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 3.3e-104 382.5 274 69.3
C03p29380 Brassica napus HOM05D004037 ORTHO05D004744 9.6e-104 380.9 319 62.1
AT2G44040 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 1.2e-103 380.6 299 65.6
BcaB01g03335 Brassica carinata HOM05D004037 ORTHO05D004744 1.2e-103 380.6 326 61.0
CARHR139200 Cardamine hirsuta HOM05D004037 ORTHO05D004744 1.2e-103 380.6 299 65.9
BcaC01g05190 Brassica carinata HOM05D004037 ORTHO05D004744 1.6e-103 380.2 319 61.8
CDE05G0441 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 1.6e-103 380.2 272 69.9
Haze_11114 Corylus avellana HOM05D004037 ORTHO05D004744 1.6e-103 380.2 298 67.1
BolC3t15285H Brassica oleracea HOM05D004037 ORTHO05D004744 2.1e-103 379.8 319 62.1
A03p24640 Brassica napus HOM05D004037 ORTHO05D004744 2.8e-103 379.4 315 62.9
BraA03t11670Z Brassica rapa HOM05D004037 ORTHO05D004744 2.8e-103 379.4 315 62.9
Carub.0004s2659 Capsella rubella HOM05D004037 ORTHO05D004744 2.8e-103 379.4 299 65.6
Carub.0005s2663 Capsella rubella HOM05D004037 ORTHO05D004744 2.8e-103 379.4 313 62.6
Thhalv10001534m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 3.6e-103 379.0 299 65.2
A04p33160 Brassica napus HOM05D004037 ORTHO05D004744 1.4e-102 377.1 342 60.8
BolC4t28586H Brassica oleracea HOM05D004037 ORTHO05D004744 1.8e-102 376.7 342 59.9
BraA04t18775Z Brassica rapa HOM05D004037 ORTHO05D004744 2.4e-102 376.3 326 61.3
AUR62032340 Chenopodium quinoa HOM05D004037 ORTHO05D004744 4.0e-102 375.6 332 60.2
Potri.017G001900 Populus trichocarpa HOM05D004037 ORTHO05D004744 4.0e-102 375.6 280 67.9
CSS0028639 Camellia sinensis var. sinensis HOM05D004037 ORTHO05D004744 6.8e-102 374.8 349 56.4
C04p70860 Brassica napus HOM05D004037 ORTHO05D004744 8.9e-102 374.4 342 59.6
PSO339G4618 Papaver somniferum HOM05D004037 ORTHO05D004744 1.2e-101 374.0 298 63.4
BcaB06g29352 Brassica carinata HOM05D004037 ORTHO05D004744 7.6e-101 371.3 339 59.9
Oeu050828.1 Olea europaea HOM05D004037 ORTHO05D004744 9.9e-101 370.9 306 66.0
Cpa.g.sc182.24 Carica papaya HOM05D004037 ORTHO05D004744 6.4e-100 368.2 282 67.0
AUR62028616 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.1e-99 367.5 328 59.8
Sopen01g041950 Solanum pennellii HOM05D004037 ORTHO05D004744 1.1e-99 367.5 247 75.3
PSO384G4791 Papaver somniferum HOM05D004037 ORTHO05D004744 2.1e-98 363.2 305 61.3
ATR0743G110 Amborella trichopoda HOM05D004037 ORTHO05D004744 7.8e-98 361.3 279 64.9
Os02g0436400 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 5.1e-97 358.6 292 64.4
Potri.007G145900 Populus trichocarpa HOM05D004037 ORTHO05D004744 1.5e-96 357.1 281 63.0
Zm00001eb176170 Zea mays HOM05D004037 ORTHO05D004744 3.6e-95 352.4 290 62.8
BcaC02g07140 Brassica carinata HOM05D004037 ORTHO05D004744 1.4e-94 350.5 309 61.5
HanXRQChr05g0133541 Helianthus annuus HOM05D004037 ORTHO05D004744 1.4e-94 350.5 340 57.1
Sabra17G0005900 Salix brachista HOM05D004037 ORTHO05D004744 7.6e-93 344.7 320 57.5
Nn048s41912 Nelumbo nucifera HOM05D004037 ORTHO05D004744 9.9e-93 344.4 242 67.8
Os03g0245100 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 8.4e-92 341.3 305 57.0
Cfa008527 Carpinus fangiana HOM05D004037 ORTHO05D004744 7.1e-91 338.2 298 60.7
BcaB06g29511 Brassica carinata HOM05D004037 ORTHO05D004744 3.1e-86 322.8 303 58.4
SEGI_29918 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 3.1e-86 322.8 305 53.1
Dinv24475 Davidia involucrata HOM05D004037 ORTHO05D004744 2.0e-85 320.1 266 66.5
Nitab4.5_0001165g0010 Nicotiana tabacum HOM05D004037 ORTHO05D004744 8.4e-84 314.7 221 73.3
SMO347G0499 Selaginella moellendorffii HOM05D004037 ORTHO05D004744 2.7e-82 309.7 282 56.4
Pp3c15_7380 Physcomitrium patens HOM05D004037 ORTHO05D004744 1.5e-80 303.9 276 56.9
FAN20G0369 Fragaria x ananassa HOM05D004037 ORTHO05D004744 6.5e-76 288.5 213 69.5
CBR_g41668 Chara braunii HOM05D004037 ORTHO05D004744 2.5e-75 286.6 279 53.0
Peaxi162Scf00434g00730 Petunia axillaris HOM05D004037 ORTHO05D004744 1.5e-72 277.3 186 79.0
Mapoly0033s0134 Marchantia polymorpha HOM05D004037 ORTHO05D004744 5.5e-67 258.8 325 47.7
Cre14.g627850 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 6.7e-65 251.9 323 44.3
PRCOL_00006631 Prasinoderma coloniale HOM05D004037 ORTHO05D004744 7.4e-64 248.4 274 47.4
MCO16G413 Micromonas commoda HOM05D004037 ORTHO05D004744 2.6e-61 240.0 288 49.3
Peaxi162Scf00434g00740 Petunia axillaris HOM05D004037 ORTHO05D004744 1.3e-60 237.7 162 79.6
Gohir.D09G124433 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.3e-55 221.1 231 56.3
Gorai.006G143300 Gossypium raimondii HOM05D004037 ORTHO05D004744 8.5e-52 208.4 211 56.9
Zm00001eb398800 Zea mays HOM05D004037 ORTHO05D004744 1.1e-51 208.0 177 58.2
Peaxi162Scf00434g00733 Petunia axillaris HOM05D004037 ORTHO05D004744 1.0e-49 201.4 218 57.3
Lsat_1_v5_gn_9_123180 Lactuca sativa HOM05D002510 ORTHO05D007210 8.5e-44 181.8 154 63.0
BcaB01g03344 Brassica carinata HOM05D004037 ORTHO05D004744 2.1e-42 177.2 289 41.2
AagrBONN_evm.TU.Sc2ySwM_368.1842 Anthoceros agrestis HOM05D004037 ORTHO05D004744 4.7e-42 176.0 185 52.4
Actinidia11426 Actinidia chinensis HOM05D004037 ORTHO05D004744 1.0e-41 174.9 313 39.9
Nn048s41913 Nelumbo nucifera HOM05D004037 ORTHO05D004744 9.1e-38 161.8 123 68.3
Cre16.g656300 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 1.5e-27 127.9 278 30.6
MBI01_g38182_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 4.7e-26 122.9 75 80.0
RhsimUnG0159300 Rhododendron simsii HOM05D004037 ORTHO05D004744 2.3e-25 120.6 159 47.8
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 6.8e-25 119.0 67 88.1
AagrBONN_evm.TU.Sc2ySwM_368.1728 Anthoceros agrestis HOM05D004037 ORTHO05D004744 6.3e-23 112.5 138 47.1
MD02G1000400 Malus domestica HOM05D004037 ORTHO05D004744 1.2e-21 108.2 89 59.6
FvH4_2g00640 Fragaria vesca HOM05D004037 ORTHO05D004744 5.0e-20 102.8 90 63.3
ATR0716G071 Amborella trichopoda HOM05D004037 ORTHO05D004744 6.6e-20 102.4 66 80.3
PSO451G0001 Papaver somniferum HOM05D004037 ORTHO05D004744 4.9e-15 86.3 77 62.3
AagrBONN_evm.TU.Sc2ySwM_344.5552 Anthoceros agrestis HOM05D004037 ORTHO05D004744 2.7e-13 80.5 75 53.3
AagrBONN_evm.TU.Sc2ySwM_152.2 Anthoceros agrestis HOM05D004037 ORTHO05D004744 2.3e-12 77.4 164 34.1
SEGI_36179 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 1.0e-09 68.6 181 27.6
CAN.G1019.1 Capsicum annuum HOM05D004037 ORTHO05D004744 4.4e-08 63.2 59 52.5
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 4.4e-08 63.2 81 45.7


User provided reference genes

Program Settings