Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold22G09738 Striga asiatica HOM05D054874 ORTHO05D051384 5.1e-96 354.4 175 100.0
SGA_v2.0_scaffold16G07798 Striga asiatica HOM05D054874 ORTHO05D398999 2.8e-17 92.8 61 77.0
MSTRG.1564 Avicennia marina HOM05D000672 ORTHO05D000522 1.0e-11 74.3 90 50.0
Cc10_g09690 Coffea canephora HOM05D000672 ORTHO05D000522 3.0e-11 72.8 90 47.8
Oeu017749.1 Olea europaea HOM05D000672 ORTHO05D000522 3.0e-11 72.8 90 46.7
Oeu044955.1 Olea europaea HOM05D000672 ORTHO05D000522 3.0e-11 72.8 90 46.7
MSTRG.25472 Avicennia marina HOM05D000672 ORTHO05D000522 3.9e-11 72.4 90 46.7
SGA_v2.0_scaffold118G32550 Striga asiatica HOM05D000672 ORTHO05D000522 6.6e-11 71.6 90 51.1
Migut.C01317 Erythranthe guttata HOM05D000672 ORTHO05D000522 1.5e-10 70.5 90 45.6
Oeu013895.1 Olea europaea HOM05D000672 ORTHO05D000522 1.5e-10 70.5 88 47.7
unitig_0.g2056 Utricularia gibba HOM05D000672 ORTHO05D000522 2.5e-10 69.7 90 45.6
SGA_v2.0_scaffold24G10597 Striga asiatica HOM05D000672 ORTHO05D000522 4.3e-10 68.9 90 47.8
SalBow7G3791 Salvia bowleyana HOM05D000672 ORTHO05D000522 9.6e-10 67.8 89 47.2
SGA_v2.0_scaffold24G10600 Striga asiatica HOM05D000672 ORTHO05D000522 9.6e-10 67.8 90 44.4
arahy.Tifrunner.gnm1.ann1.1H9F4R Arachis hypogaea HOM05D000672 ORTHO05D000522 1.2e-09 67.4 89 44.9
COL.COLO4_24657 Corchorus olitorius HOM05D000672 ORTHO05D000522 1.6e-09 67.0 89 47.2
Dinv41756 Davidia involucrata HOM05D000672 ORTHO05D000522 2.1e-09 66.6 87 46.0
unitig_26.g9867 Utricularia gibba HOM05D000672 ORTHO05D000522 2.8e-09 66.2 90 43.3
unitig_747.g21559 Utricularia gibba HOM05D000672 ORTHO05D000522 2.8e-09 66.2 90 44.4
TWI23G0615 Tripterygium wilfordii HOM05D000672 ORTHO05D000522 3.6e-09 65.9 89 43.8
Duzib177G0856 Durio zibethinus HOM05D000672 ORTHO05D000522 4.7e-09 65.5 89 44.9
Gohir.A10G155500 Gossypium hirsutum HOM05D000672 ORTHO05D000522 4.7e-09 65.5 91 49.5
Gohir.D10G110400 Gossypium hirsutum HOM05D000672 ORTHO05D000522 6.2e-09 65.1 91 48.4
Gorai.011G121700 Gossypium raimondii HOM05D000672 ORTHO05D000522 6.2e-09 65.1 91 48.4
SGA_v2.0_scaffold19G08939 Striga asiatica HOM05D000672 ORTHO05D000522 6.2e-09 65.1 88 43.2
TAR628G0722 Trochodendron aralioides HOM05D000672 ORTHO05D000522 6.2e-09 65.1 89 44.9
arahy.Tifrunner.gnm1.ann1.X2E0H1 Arachis hypogaea HOM05D000672 ORTHO05D000522 8.1e-09 64.7 89 46.1
Medtr4g033435 Medicago truncatula HOM05D000672 ORTHO05D000522 8.1e-09 64.7 87 43.7
PGR102G0927 Punica granatum HOM05D000672 ORTHO05D000522 1.4e-08 63.9 89 44.9
SGA_v2.0_scaffold88G27317 Striga asiatica HOM05D000679 ORTHO05D051384 1.4e-08 63.9 39 71.8
ClCG04G002490 Citrullus lanatus HOM05D000672 ORTHO05D000522 1.8e-08 63.5 88 44.3
Lsat_1_v5_gn_1_26001 Lactuca sativa HOM05D000672 ORTHO05D000522 1.8e-08 63.5 91 46.2
GSVIVG01026077001 Vitis vinifera HOM05D000672 ORTHO05D000522 1.8e-08 63.5 89 41.6
Aqoxy5G02650 Aquilegia oxysepala HOM05D000672 ORTHO05D000522 2.4e-08 63.2 89 41.6
CAN.G1963.1 Capsicum annuum HOM05D000672 ORTHO05D000522 2.4e-08 63.2 88 45.5
Manes.18G105400 Manihot esculenta HOM05D000672 ORTHO05D000522 2.4e-08 63.2 89 43.8
Cpa.g.c39307 Carica papaya HOM05D000672 ORTHO05D000522 3.1e-08 62.8 89 42.7
ClCG08G000210 Citrullus lanatus HOM05D000672 ORTHO05D000522 3.1e-08 62.8 89 43.8
Gohir.A05G272700 Gossypium hirsutum HOM05D000672 ORTHO05D000522 3.1e-08 62.8 89 43.8
Gohir.D05G274900 Gossypium hirsutum HOM05D000672 ORTHO05D000522 3.1e-08 62.8 89 43.8
Gorai.009G288200 Gossypium raimondii HOM05D000672 ORTHO05D000522 3.1e-08 62.8 89 43.8
Psat7g146080 Pisum sativum HOM05D000672 ORTHO05D000522 3.1e-08 62.8 87 43.7
MELO3C008890.2 Cucumis melo HOM05D000672 ORTHO05D000522 4.0e-08 62.4 88 43.2
MELO3C022226.2 Cucumis melo HOM05D000672 ORTHO05D000522 4.0e-08 62.4 89 43.8
Migut.N03370 Erythranthe guttata HOM05D000672 ORTHO05D000522 4.0e-08 62.4 91 42.9
Glyma.05G197900 Glycine max HOM05D000672 ORTHO05D000522 4.0e-08 62.4 89 43.8
Glyma.08G005200 Glycine max HOM05D000672 ORTHO05D000522 4.0e-08 62.4 89 43.8
Manes.02G198300 Manihot esculenta HOM05D000672 ORTHO05D000522 4.0e-08 62.4 89 43.8
Solyc06g064940.3 Solanum lycopersicum HOM05D000672 ORTHO05D000522 4.0e-08 62.4 94 41.5
Sopen06g023460 Solanum pennellii HOM05D000672 ORTHO05D000522 4.0e-08 62.4 95 42.1
PGSC0003DMG400005189 Solanum tuberosum HOM05D000672 ORTHO05D000522 4.0e-08 62.4 94 41.5
Thecc.08G191800 Theobroma cacao HOM05D000672 ORTHO05D000522 4.0e-08 62.4 88 45.5
TPR.G27904 Trifolium pratense HOM05D000672 ORTHO05D000522 4.0e-08 62.4 87 44.8
Gohir.A13G119300 Gossypium hirsutum HOM05D000672 ORTHO05D000522 5.2e-08 62.0 88 44.3
Gohir.D13G123100 Gossypium hirsutum HOM05D000672 ORTHO05D000522 5.2e-08 62.0 88 44.3
Gorai.013G138100 Gossypium raimondii HOM05D000672 ORTHO05D000522 5.2e-08 62.0 88 44.3
Nitab4.5_0005558g0010 Nicotiana tabacum HOM05D000672 ORTHO05D000522 5.2e-08 62.0 88 44.3
Solyc11g051160.2 Solanum lycopersicum HOM05D000672 ORTHO05D000522 5.2e-08 62.0 88 44.3
Sopen11g022500 Solanum pennellii HOM05D000672 ORTHO05D000522 5.2e-08 62.0 88 44.3
Nitab4.5_0001463g0010 Nicotiana tabacum HOM05D000672 ORTHO05D000522 6.8e-08 61.6 88 44.3
Nitab4.5_0004698g0050 Nicotiana tabacum HOM05D000672 ORTHO05D000522 6.8e-08 61.6 88 44.3
Peaxi162Scf00688g00431 Petunia axillaris HOM05D000672 ORTHO05D000522 6.8e-08 61.6 88 44.3
QL02p026353 Quercus lobata HOM05D000672 ORTHO05D000522 6.8e-08 61.6 89 46.1
CAN.G308.32 Capsicum annuum HOM05D000672 ORTHO05D000522 1.2e-07 60.8 88 44.3
CsaV3_5G040530 Cucumis sativus L. HOM05D000672 ORTHO05D000522 1.2e-07 60.8 89 43.8
DCAR_017442 Daucus carota HOM05D000672 ORTHO05D000522 1.2e-07 60.8 87 42.5
Dinv20706 Davidia involucrata HOM05D000672 ORTHO05D000522 1.2e-07 60.8 89 44.9
PSO017G7098 Papaver somniferum HOM05D000672 ORTHO05D000522 1.2e-07 60.8 88 38.6
Sabra19G0009500 Salix brachista HOM05D000672 ORTHO05D000522 1.2e-07 60.8 89 42.7
Sed0013370 Sechium edule HOM05D000672 ORTHO05D000522 1.2e-07 60.8 89 42.7
arahy.Tifrunner.gnm1.ann1.BTW1U1 Arachis hypogaea HOM05D000672 ORTHO05D000522 1.5e-07 60.5 89 42.7
arahy.Tifrunner.gnm1.ann1.M16IE8 Arachis hypogaea HOM05D000672 ORTHO05D000522 1.5e-07 60.5 89 42.7
Cfa012966 Carpinus fangiana HOM05D000672 ORTHO05D000522 1.5e-07 60.5 89 46.1
CsaV3_4G030300 Cucumis sativus L. HOM05D000672 ORTHO05D000522 1.5e-07 60.5 88 42.0
Eucgr.F02993 Eucalyptus grandis HOM05D000672 ORTHO05D000522 1.5e-07 60.5 89 40.4
Glyma.12G001800 Glycine max HOM05D000672 ORTHO05D000522 1.5e-07 60.5 87 43.7
Gohir.A11G226600 Gossypium hirsutum HOM05D000672 ORTHO05D000522 1.5e-07 60.5 91 45.1
Gorai.003G066500 Gossypium raimondii HOM05D000672 ORTHO05D000522 1.5e-07 60.5 91 45.1
Rhsim12G0006200 Rhododendron simsii HOM05D000672 ORTHO05D000522 1.5e-07 60.5 86 45.3
TWI14G1379 Tripterygium wilfordii HOM05D000672 ORTHO05D000522 1.5e-07 60.5 89 41.6
vmacro00979 Vaccinium macrocarpon HOM05D000672 ORTHO05D000522 1.5e-07 60.5 86 45.3
CiPaw.08G002700 Carya illinoinensis HOM05D000672 ORTHO05D000522 2.0e-07 60.1 91 38.5
Duzib187G0452 Durio zibethinus HOM05D000672 ORTHO05D000522 2.0e-07 60.1 91 45.1
Glyma.04G205300 Glycine max HOM05D000672 ORTHO05D000522 2.0e-07 60.1 89 42.7
MD05G1266100 Malus domestica HOM05D000672 ORTHO05D000522 2.0e-07 60.1 88 43.2
Peaxi162Scf01231g00214 Petunia axillaris HOM05D000672 ORTHO05D000522 2.0e-07 60.1 88 43.2
Phvul.002G278300 Phaseolus vulgaris HOM05D000672 ORTHO05D000522 2.0e-07 60.1 89 42.7
Phvul.009G157900 Phaseolus vulgaris HOM05D000672 ORTHO05D000522 2.0e-07 60.1 89 42.7
Sabra19G0002700 Salix brachista HOM05D000672 ORTHO05D000522 2.0e-07 60.1 89 42.7
VMungo1309G0900 Vigna mungo HOM05D000672 ORTHO05D000522 2.0e-07 60.1 89 42.7
CiPaw.03G253000 Carya illinoinensis HOM05D000672 ORTHO05D000522 2.6e-07 59.7 89 42.7
Duzib147G0547 Durio zibethinus HOM05D000672 ORTHO05D000522 2.6e-07 59.7 89 42.7
Lj1g0013656 Lotus japonicus HOM05D000672 ORTHO05D000522 2.6e-07 59.7 89 42.7
Lj4g0005659 Lotus japonicus HOM05D000672 ORTHO05D000522 2.6e-07 59.7 88 43.2
Manes.13G075199 Manihot esculenta HOM05D000672 ORTHO05D000522 2.6e-07 59.7 89 42.7
Medtr3g097350 Medicago truncatula HOM05D000672 ORTHO05D000522 2.6e-07 59.7 88 43.2
TPR.G28692 Trifolium pratense HOM05D000672 ORTHO05D000522 2.6e-07 59.7 89 43.8
CANSAT64G0441 Cannabis sativa HOM05D000672 ORTHO05D000522 3.4e-07 59.3 88 39.8
Haze_21310 Corylus avellana HOM05D000672 ORTHO05D000522 3.4e-07 59.3 89 44.9
Eucgr.F04114 Eucalyptus grandis HOM05D000672 ORTHO05D000522 3.4e-07 59.3 89 40.4
Glyma.08G239900 Glycine max HOM05D000672 ORTHO05D000522 3.4e-07 59.3 86 44.2
Potri.T011100 Populus trichocarpa HOM05D000672 ORTHO05D000522 3.4e-07 59.3 89 40.4
Potri.T011101 Populus trichocarpa HOM05D000672 ORTHO05D000522 3.4e-07 59.3 89 40.4
RcHm_v2.0_Chr7g0227641 Rosa chinensis HOM05D000672 ORTHO05D000522 3.4e-07 59.3 88 37.5
TWI79G0641 Tripterygium wilfordii HOM05D000672 ORTHO05D000522 3.4e-07 59.3 89 42.7
Cpa.g.sc138.20 Carica papaya HOM05D000672 ORTHO05D000522 4.4e-07 58.9 91 45.1
CiPaw.07G236000 Carya illinoinensis HOM05D000672 ORTHO05D000522 4.4e-07 58.9 91 37.4
Ciclev10000682m.g Citrus clementina HOM05D000672 ORTHO05D000522 4.4e-07 58.9 91 44.0
Lj7A621T37 Lonicera japonica HOM05D000672 ORTHO05D000522 4.4e-07 58.9 89 40.4
Lalb_Chr07g0184001 Lupinus albus HOM05D000672 ORTHO05D000522 4.4e-07 58.9 89 42.7
Lalb_Chr12g0202771 Lupinus albus HOM05D000672 ORTHO05D000522 4.4e-07 58.9 89 42.7
Sabra04G0091700 Salix brachista HOM05D000672 ORTHO05D000522 4.4e-07 58.9 89 41.6
Glyma.06G160200 Glycine max HOM05D000672 ORTHO05D000522 5.8e-07 58.5 89 41.6
MD15G1406000 Malus domestica HOM05D000672 ORTHO05D000522 5.8e-07 58.5 90 37.8
Oeu034384.1 Olea europaea HOM05D000672 ORTHO05D000522 5.8e-07 58.5 89 41.6
Potri.004G138200 Populus trichocarpa HOM05D000672 ORTHO05D000522 5.8e-07 58.5 89 41.6
GSVIVG01022428001 Vitis vinifera HOM05D000672 ORTHO05D000522 5.8e-07 58.5 89 41.6
Actinidia23034 Actinidia chinensis HOM05D000672 ORTHO05D000522 7.6e-07 58.2 87 43.7
EL10Ac4g08979 Beta vulgaris HOM05D000672 ORTHO05D000522 7.6e-07 58.2 89 42.7
Ciclev10025217m.g Citrus clementina HOM05D000672 ORTHO05D000522 7.6e-07 58.2 89 41.6
arahy.Tifrunner.gnm1.ann1.N9XSRA Arachis hypogaea HOM05D000672 ORTHO05D000522 9.9e-07 57.8 88 43.2
Gohir.D11G232300 Gossypium hirsutum HOM05D000672 ORTHO05D000522 9.9e-07 57.8 91 44.0
Lalb_Chr08g0237761 Lupinus albus HOM05D000672 ORTHO05D000522 9.9e-07 57.8 89 41.6
Phvul.011G002100 Phaseolus vulgaris HOM05D000672 ORTHO05D000522 9.9e-07 57.8 86 43.0
Atru.chr13.2362 Acer truncatum HOM05D000672 ORTHO05D000522 1.3e-06 57.4 88 38.6
MSTRG.23505 Avicennia marina HOM05D000672 ORTHO05D000522 1.3e-06 57.4 89 41.6
CSS0042135 Camellia sinensis var. sinensis HOM05D000672 ORTHO05D000522 1.3e-06 57.4 87 41.4
FvH4_5g31750 Fragaria vesca HOM05D000672 ORTHO05D000522 1.3e-06 57.4 88 36.4
FAN04G1961 Fragaria x ananassa HOM05D000672 ORTHO05D000522 1.3e-06 57.4 88 36.4
FAN08G0265 Fragaria x ananassa HOM05D000672 ORTHO05D000522 1.3e-06 57.4 88 36.4
FAN13G2325 Fragaria x ananassa HOM05D000672 ORTHO05D000522 1.3e-06 57.4 88 36.4
FAN18G3464 Fragaria x ananassa HOM05D000672 ORTHO05D000522 1.3e-06 57.4 88 36.4
Potri.019G079500 Populus trichocarpa HOM05D000672 ORTHO05D000522 1.3e-06 57.4 89 40.4
Sabra13G0091700 Salix brachista HOM05D000672 ORTHO05D000522 1.3e-06 57.4 89 41.6
Sed0019190 Sechium edule HOM05D000672 ORTHO05D000522 1.3e-06 57.4 88 39.8
Hund06898 Selenicereus undatus HOM05D000672 ORTHO05D000522 1.3e-06 57.4 89 41.6
TAR624G0504 Trochodendron aralioides HOM05D000672 ORTHO05D000522 1.3e-06 57.4 89 41.6
unitig_749.g13875 Utricularia gibba HOM05D000672 ORTHO05D000522 1.3e-06 57.4 84 44.0
Psat5g057360 Pisum sativum HOM05D000672 ORTHO05D000522 1.7e-06 57.0 89 41.6
Prupe.1G555200 Prunus persica HOM05D000672 ORTHO05D000522 1.7e-06 57.0 88 35.2
VMungo0251G1796 Vigna mungo HOM05D000672 ORTHO05D000522 1.7e-06 57.0 89 41.6
arahy.Tifrunner.gnm1.ann1.LX021I Arachis hypogaea HOM05D000672 ORTHO05D000522 2.2e-06 56.6 87 42.5
Cfa002247 Carpinus fangiana HOM05D000672 ORTHO05D000522 2.9e-06 56.2 89 41.6
Lalb_Chr11g0068841 Lupinus albus HOM05D000672 ORTHO05D000522 2.9e-06 56.2 89 40.4
QL05p064483 Quercus lobata HOM05D000672 ORTHO05D000522 2.9e-06 56.2 88 42.0
TWI59G1461 Tripterygium wilfordii HOM05D000672 ORTHO05D000522 2.9e-06 56.2 89 39.3
ATR1134G131 Amborella trichopoda HOM05D000672 ORTHO05D000522 3.8e-06 55.8 89 39.3
CiPaw.04G178500 Carya illinoinensis HOM05D000672 ORTHO05D000522 3.8e-06 55.8 89 40.4
Ca_19687_v3 Cicer arietinum L. HOM05D000672 ORTHO05D000522 3.8e-06 55.8 89 39.3
Haze_25426 Corylus avellana HOM05D000672 ORTHO05D000522 3.8e-06 55.8 89 40.4
HanXRQChr13g0402351 Helianthus annuus HOM05D000672 ORTHO05D000522 3.8e-06 55.8 88 42.0
MBI09_g05948_MAGBIO Magnolia biondii HOM05D000672 ORTHO05D000522 3.8e-06 55.8 87 37.9
MD08G1218000 Malus domestica HOM05D000672 ORTHO05D000522 3.8e-06 55.8 87 42.5
Thecc.01G239200 Theobroma cacao HOM05D000672 ORTHO05D000522 3.8e-06 55.8 91 42.9
AUR62004816 Chenopodium quinoa HOM05D000672 ORTHO05D000522 4.9e-06 55.5 89 41.6
Lj3g0025463 Lotus japonicus HOM05D000672 ORTHO05D000522 4.9e-06 55.5 91 42.9
SGA_v2.0_scaffold126G33830 Striga asiatica HOM05D000679 ORTHO05D000137 4.9e-06 55.5 39 66.7
SGA_v2.0_scaffold178G39480 Striga asiatica HOM05D002262 ORTHO05D000137 4.9e-06 55.5 39 66.7
SGA_v2.0_scaffold276G46661 Striga asiatica HOM05D000679 ORTHO05D000137 4.9e-06 55.5 39 66.7
SGA_v2.0_scaffold306G48010 Striga asiatica HOM05D000679 ORTHO05D000137 4.9e-06 55.5 39 66.7
SGA_v2.0_scaffold59G20643 Striga asiatica HOM05D000679 ORTHO05D000137 4.9e-06 55.5 39 66.7
TPR.G12875 Trifolium pratense HOM05D000672 ORTHO05D000522 4.9e-06 55.5 89 40.4
VMungo1127G0350 Vigna mungo HOM05D000672 ORTHO05D000522 4.9e-06 55.5 89 40.4
Aa31LG4G8410 Aethionema arabicum HOM05D000672 ORTHO05D000522 6.4e-06 55.1 87 40.2
Aqoxy1G01500 Aquilegia oxysepala HOM05D000672 ORTHO05D000522 6.4e-06 55.1 90 40.0
MD05G1265900 Malus domestica HOM05D000672 ORTHO05D000522 6.4e-06 55.1 88 43.2
MD08G1218200 Malus domestica HOM05D000672 ORTHO05D000522 6.4e-06 55.1 88 35.2
Potri.013G106000 Populus trichocarpa HOM05D000672 ORTHO05D000522 6.4e-06 55.1 89 40.4
QL10p038755 Quercus lobata HOM05D000672 ORTHO05D000522 6.4e-06 55.1 89 39.3
CANSAT54G1035 Cannabis sativa HOM05D000672 ORTHO05D000522 8.4e-06 54.7 89 39.3
Dinv41757 Davidia involucrata HOM05D000672 ORTHO05D000522 8.4e-06 54.7 87 41.4
ECA246G5283 Erigeron canadensis HOM05D000672 ORTHO05D000522 8.4e-06 54.7 88 37.5
THA.LOC104809730 Tarenaya hassleriana HOM05D000672 ORTHO05D000522 8.4e-06 54.7 87 40.2
VMungo1127G1569 Vigna mungo HOM05D000672 ORTHO05D000522 8.4e-06 54.7 88 38.6


User provided reference genes

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