Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 1.2e-153 546.6 291 100.0
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 6.2e-123 444.5 302 79.8
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 2.0e-105 386.3 298 73.8
Hund21832 Selenicereus undatus HOM05D005826 ORTHO05D004357 2.6e-100 369.4 291 71.8
PGR083G1613 Punica granatum HOM05D005826 ORTHO05D004357 4.8e-99 365.2 297 68.7
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 1.1e-98 364.0 297 68.4
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 3.1e-98 362.5 302 67.9
VMungo1383G1915 Vigna mungo HOM05D005826 ORTHO05D004357 5.9e-97 358.2 307 65.5
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 1.7e-96 356.7 285 68.8
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 1.4e-95 353.6 298 66.8
GSVIVG01031331001 Vitis vinifera HOM05D005826 ORTHO05D004357 7.2e-95 351.3 317 64.4
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 2.7e-94 349.4 303 65.7
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 3.6e-94 349.0 303 65.7
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 1.0e-93 347.4 269 69.9
MSTRG.27910 Avicennia marina HOM05D005826 ORTHO05D004357 3.9e-93 345.5 299 66.9
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 1.5e-92 343.6 269 72.1
Eucgr.B01823 Eucalyptus grandis HOM05D005826 ORTHO05D004357 2.6e-92 342.8 269 71.0
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 3.3e-92 342.4 306 63.7
Phvul.001G222000 Phaseolus vulgaris HOM05D005826 ORTHO05D004357 3.3e-92 342.4 305 62.6
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 4.4e-92 342.0 309 63.8
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 7.4e-92 341.3 309 62.1
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 2.8e-91 339.3 300 64.3
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 3.7e-91 339.0 302 64.2
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 2.4e-90 336.3 301 63.8
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 3.1e-90 335.9 303 62.4
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 4.1e-90 335.5 301 63.1
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 5.3e-90 335.1 300 63.7
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 1.2e-89 334.0 306 64.1
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 1.2e-89 334.0 300 64.0
Lalb_Chr18g0046231 Lupinus albus HOM05D005826 ORTHO05D004357 2.6e-89 332.8 305 63.6
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 4.5e-89 332.0 284 66.2
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 4.5e-89 332.0 288 65.6
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 1.0e-88 330.9 288 65.6
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 1.3e-88 330.5 297 62.3
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 1.7e-88 330.1 270 68.9
Ca_09273_v3 Cicer arietinum L. HOM05D005826 ORTHO05D004357 6.5e-88 328.2 309 60.8
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 1.5e-87 327.0 287 63.8
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 1.9e-87 326.6 317 61.8
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 2.5e-87 326.2 301 62.1
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 3.2e-87 325.9 291 63.2
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 4.2e-87 325.5 306 61.4
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 7.2e-87 324.7 297 61.3
CANSAT54G1651 Cannabis sativa HOM05D005826 ORTHO05D004357 3.6e-86 322.4 304 61.2
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 6.1e-86 321.6 302 59.3
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 5.2e-85 318.5 305 61.3
FAN09G2233 Fragaria x ananassa HOM05D005826 ORTHO05D004357 6.7e-85 318.2 306 62.1
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 8.8e-85 317.8 300 63.3
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 1.5e-84 317.0 268 66.8
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 3.3e-84 315.8 272 66.2
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 5.7e-84 315.1 302 61.6
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 1.2e-81 307.4 305 59.3
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 4.5e-81 305.4 288 61.5
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 1.3e-80 303.9 287 62.7
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 2.2e-80 303.1 244 68.9
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 1.5e-79 300.4 341 54.5
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 4.2e-79 298.9 288 62.2
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 4.2e-79 298.9 291 59.8
FvH4_6g08510 Fragaria vesca HOM05D005826 ORTHO05D004357 9.4e-79 297.7 306 59.8
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 9.4e-79 297.7 193 82.9
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 9.4e-79 297.7 290 59.7
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.1e-78 296.6 306 59.5
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 2.7e-78 296.2 306 57.8
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 3.6e-78 295.8 315 58.4
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 8.0e-78 294.7 272 63.6
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 4.0e-77 292.4 316 57.0
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 3.4e-76 289.3 298 59.1
Mapoly0026s0010 Marchantia polymorpha HOM05D005826 ORTHO05D004357 1.4e-74 283.9 281 57.7
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 3.1e-74 282.7 222 71.2
A09p05710 Brassica napus HOM05D005826 ORTHO05D004357 3.5e-73 279.3 275 60.4
BraA09t36211Z Brassica rapa HOM05D005826 ORTHO05D004357 3.5e-73 279.3 275 60.4
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 1.0e-72 277.7 284 55.3
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 3.8e-72 275.8 272 59.6
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 3.6e-70 269.2 330 53.6
Rhsim11G0104700 Rhododendron simsii HOM05D005826 ORTHO05D004357 1.8e-69 266.9 271 59.8
Cc02_g35870 Coffea canephora HOM05D005826 ORTHO05D004357 3.0e-69 266.2 298 55.0
ClCG03G017880 Citrullus lanatus HOM05D005826 ORTHO05D004357 1.5e-68 263.8 338 50.6
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 1.5e-68 263.8 293 55.3
Ah.06g190730 Amaranthus hybridus HOM05D005826 ORTHO05D004357 2.2e-67 260.0 294 55.4
BcaC04g23633 Brassica carinata HOM05D005826 ORTHO05D004357 8.3e-67 258.1 274 57.3
C09p06300 Brassica napus HOM05D005826 ORTHO05D004357 8.3e-67 258.1 274 57.3
BolC9t53550H Brassica oleracea HOM05D005826 ORTHO05D004357 8.3e-67 258.1 274 57.3
CSS0017545 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 2.7e-65 253.1 298 53.7
FAN02G3127 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.0e-64 251.1 304 52.3
CSS0045001 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 1.3e-64 250.8 300 53.3
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 1.7e-64 250.4 272 56.2
Potri.005G002700 Populus trichocarpa HOM05D005826 ORTHO05D004357 2.9e-64 249.6 297 53.5
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 4.3e-63 245.7 303 51.8
Nitab4.5_0002516g0020 Nicotiana tabacum HOM05D005826 ORTHO05D004357 3.6e-62 242.7 333 48.6
RcHm_v2.0_Chr3g0458551 Rosa chinensis HOM05D005826 ORTHO05D004357 1.8e-61 240.4 308 51.0
SMO196G0190 Selaginella moellendorffii HOM05D005826 ORTHO05D004357 4.0e-61 239.2 264 53.4
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 2.0e-60 236.9 291 50.9
QL03p011008 Quercus lobata HOM05D005826 ORTHO05D004357 2.0e-60 236.9 294 51.7
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 3.4e-60 236.1 293 50.5
Sp2g21260 Schrenkiella parvula HOM05D005826 ORTHO05D004357 2.2e-59 233.4 290 52.1
Sabra05G0000100 Salix brachista HOM05D005826 ORTHO05D004357 6.4e-59 231.9 300 50.3
Sabra05G0014200 Salix brachista HOM05D005826 ORTHO05D004357 6.4e-59 231.9 300 50.3
Prupe.6G304400 Prunus persica HOM05D005826 ORTHO05D004357 1.4e-58 230.7 274 51.5
MBI12_g27791_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 3.2e-58 229.6 191 64.4
ECA240G4745 Erigeron canadensis HOM05D005826 ORTHO05D004357 5.4e-58 228.8 286 53.1
FAN05G0435 Fragaria x ananassa HOM05D005826 ORTHO05D004357 5.4e-58 228.8 306 50.3
HanXRQChr09g0247941 Helianthus annuus HOM05D005826 ORTHO05D004357 5.4e-58 228.8 303 50.5
Aa31LG11G9920 Aethionema arabicum HOM05D005826 ORTHO05D004357 3.0e-56 223.0 265 53.2
Nitab4.5_0005662g0030 Nicotiana tabacum HOM05D005826 ORTHO05D004357 3.9e-56 222.6 307 47.6
BcaB04g19716 Brassica carinata HOM05D005826 ORTHO05D004357 5.0e-56 222.2 275 52.7
PSO210G7107 Papaver somniferum HOM05D005826 ORTHO05D004357 2.3e-53 213.4 277 49.5
CARHR186850 Cardamine hirsuta HOM05D005826 ORTHO05D004357 4.9e-51 205.7 257 51.4
CBR_g48434 Chara braunii HOM05D005826 ORTHO05D004357 1.1e-50 204.5 148 67.6
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 1.6e-49 200.7 285 46.3
BcaNung03909 Brassica carinata HOM05D005826 ORTHO05D004357 3.3e-47 193.0 227 52.0
MBI09_g02136_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.2e-46 191.0 191 58.6
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 2.3e-45 186.8 284 44.7
PSO761G0619 Papaver somniferum HOM05D005826 ORTHO05D004357 2.3e-45 186.8 277 45.8
AagrBONN_evm.TU.Sc2ySwM_362.2503 Anthoceros agrestis HOM05D005826 ORTHO05D004357 4.1e-42 176.0 137 64.2
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 6.6e-40 168.7 111 74.8
MBI12_g47801_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 3.1e-37 159.8 171 55.6
MBI06_g28828_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 2.4e-34 150.2 160 55.6
Cre03.g201250 Chlamydomonas reinhardtii HOM05D005826 ORTHO05D004357 5.6e-31 139.0 175 47.4
Potri.013G002100 Populus trichocarpa HOM05D005826 ORTHO05D004357 8.1e-30 135.2 162 52.5
Migut.O00760 Erythranthe guttata HOM05D005826 ORTHO05D004357 4.4e-28 129.4 111 71.2
MELO3C015241.2 Cucumis melo HOM05D005826 ORTHO05D004357 5.8e-28 129.0 81 76.5
PGR083G0870 Punica granatum HOM05D005826 ORTHO05D004357 1.3e-27 127.9 131 60.3
PGSC0003DMG400018243 Solanum tuberosum HOM05D005826 ORTHO05D004357 7.1e-26 122.1 130 60.8
MELO3C021663.2 Cucumis melo HOM05D005826 ORTHO05D004357 5.1e-24 115.9 66 84.8
BcaNung03680 Brassica carinata HOM05D005826 ORTHO05D004357 6.6e-24 115.5 98 66.3
C07p41530 Brassica napus HOM05D005826 ORTHO05D004357 1.3e-22 111.3 97 64.9
BolC7t44686H Brassica oleracea HOM05D005826 ORTHO05D004357 1.3e-22 111.3 97 64.9
BraA06t26622Z Brassica rapa HOM05D005826 ORTHO05D004357 2.4e-21 107.1 121 57.0
A06p36960 Brassica napus HOM05D005826 ORTHO05D004357 1.6e-14 84.3 64 67.2
Os05g0229475 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 1.8e-13 80.9 48 77.1
Oeu023421.1 Olea europaea HOM05D005826 ORTHO05D004357 2.5e-10 70.5 57 66.7
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 4.6e-09 66.2 101 41.6
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 1.0e-08 65.1 105 40.0
AUR62017753 Chenopodium quinoa HOM05D006753 ORTHO05D008521 1.1e-07 61.6 124 33.9
Os04g0114801 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 2.5e-07 60.5 59 54.2
AUR62032899 Chenopodium quinoa HOM05D006753 ORTHO05D008521 3.3e-07 60.1 114 34.2
SMO145G0064 Selaginella moellendorffii HOM05D006823 ORTHO05D008608 3.3e-07 60.1 76 46.1
Cfa018673 Carpinus fangiana HOM05D006753 ORTHO05D008521 5.7e-07 59.3 107 36.4
ECA247G0541 Erigeron canadensis HOM05D002899 ORTHO05D003850 5.7e-07 59.3 95 35.8
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 5.7e-07 59.3 105 37.1
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 9.6e-07 58.5 109 34.9
Lalb_Chr05g0228951 Lupinus albus HOM05D005384 ORTHO05D006477 1.3e-06 58.2 68 42.6
Os10g0491900 Oryza sativa ssp. japonica HOM05D006753 ORTHO05D008521 1.3e-06 58.2 107 37.4
Lalb_Chr16g0391981 Lupinus albus HOM05D005384 ORTHO05D006477 1.6e-06 57.8 68 41.2
Oeu006328.1 Olea europaea HOM05D006753 ORTHO05D008521 1.6e-06 57.8 111 35.1
Sed0018353 Sechium edule HOM05D005384 ORTHO05D006477 1.6e-06 57.8 68 41.2
CDE12G0861 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 2.1e-06 57.4 29 86.2
Duzib132G0454 Durio zibethinus HOM05D006753 ORTHO05D008521 2.8e-06 57.0 106 34.0
Glyma.10G288900 Glycine max HOM05D006753 ORTHO05D008521 2.8e-06 57.0 119 34.5
FvH4_4g37311 Fragaria vesca HOM05D006753 ORTHO05D008521 3.7e-06 56.6 111 34.2
FAN07G1749 Fragaria x ananassa HOM05D006753 ORTHO05D008521 3.7e-06 56.6 111 33.3
FAN17G2405 Fragaria x ananassa HOM05D006753 ORTHO05D008521 3.7e-06 56.6 111 33.3
Lj4g0003244 Lotus japonicus HOM05D005384 ORTHO05D006477 3.7e-06 56.6 68 41.2
Thecc.02G152400 Theobroma cacao HOM05D006753 ORTHO05D008521 3.7e-06 56.6 110 35.5
Phvul.003G273500 Phaseolus vulgaris HOM05D005384 ORTHO05D006477 4.8e-06 56.2 68 41.2
SMO367G0074 Selaginella moellendorffii HOM05D005384 ORTHO05D006477 4.8e-06 56.2 55 49.1
SEGI_21811 Sequoiadendron giganteum HOM05D008111 ORTHO05D002142 4.8e-06 56.2 68 42.6
TPR.G28963 Trifolium pratense HOM05D005384 ORTHO05D006477 4.8e-06 56.2 68 41.2
AagrBONN_evm.TU.Sc2ySwM_228.1188 Anthoceros agrestis HOM05D006753 ORTHO05D008521 6.2e-06 55.8 50 50.0
A09p59170 Brassica napus HOM05D006753 ORTHO05D008521 6.2e-06 55.8 53 47.2
CiPaw.16G000900 Carya illinoinensis HOM05D006753 ORTHO05D008521 6.2e-06 55.8 115 34.8
Nn3g18540 Nelumbo nucifera HOM05D006753 ORTHO05D008521 6.2e-06 55.8 116 36.2
TWI53G0448 Tripterygium wilfordii HOM05D006753 ORTHO05D008521 6.2e-06 55.8 112 35.7
VMungo0251G2756 Vigna mungo HOM05D005384 ORTHO05D006477 6.2e-06 55.8 68 41.2
arahy.Tifrunner.gnm1.ann1.RGG8YR Arachis hypogaea HOM05D006753 ORTHO05D008521 8.2e-06 55.5 56 46.4
Lj5g0026283 Lotus japonicus HOM05D006753 ORTHO05D008521 8.2e-06 55.5 108 33.3
Medtr8g070990 Medicago truncatula HOM05D005384 ORTHO05D006477 8.2e-06 55.5 64 42.2


User provided reference genes

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