Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold22G09698 Striga asiatica HOM05D003009 ORTHO05D001701 2.1e-67 258.8 126 100.0
Oeu064785.1 Olea europaea HOM05D003009 ORTHO05D001701 3.2e-31 138.7 101 63.4
Oeu033907.1 Olea europaea HOM05D003009 ORTHO05D001701 1.6e-30 136.3 105 62.9
MSTRG.7337 Avicennia marina HOM05D003009 ORTHO05D001701 5.1e-29 131.3 111 55.9
Nitab4.5_0001652g0100 Nicotiana tabacum HOM05D003009 ORTHO05D001701 5.2e-26 121.3 108 54.6
Solyc02g078040.3 Solanum lycopersicum HOM05D003009 ORTHO05D001701 1.2e-25 120.2 104 55.8
Sopen02g022880 Solanum pennellii HOM05D003009 ORTHO05D001701 1.2e-25 120.2 104 55.8
PGSC0003DMG400029700 Solanum tuberosum HOM05D003009 ORTHO05D001701 1.2e-25 120.2 105 56.2
Dinv17322 Davidia involucrata HOM05D003009 ORTHO05D001701 2.9e-24 115.5 102 52.0
Peaxi162Scf00250g00053 Petunia axillaris HOM05D003009 ORTHO05D001701 3.8e-24 115.2 113 51.3
PGSC0003DMG400029695 Solanum tuberosum HOM05D003009 ORTHO05D001701 3.8e-24 115.2 112 52.7
CAN.G529.10 Capsicum annuum HOM05D003009 ORTHO05D001701 6.4e-24 114.4 113 50.4
Dinv40571 Davidia involucrata HOM05D003009 ORTHO05D001701 8.4e-24 114.0 103 53.4
Lj2A289T21 Lonicera japonica HOM05D003009 ORTHO05D001701 1.1e-23 113.6 107 54.2
Solyc02g078100.3 Solanum lycopersicum HOM05D003009 ORTHO05D001701 1.9e-23 112.8 115 50.4
Sopen02g022930 Solanum pennellii HOM05D003009 ORTHO05D001701 1.9e-23 112.8 115 50.4
Peaxi162Scf00250g00029 Petunia axillaris HOM05D003009 ORTHO05D001701 4.2e-23 111.7 109 51.4
CAN.G529.5 Capsicum annuum HOM05D003009 ORTHO05D001701 1.2e-22 110.2 107 52.3
Nitab4.5_0011894g0010 Nicotiana tabacum HOM05D003009 ORTHO05D001701 2.1e-22 109.4 90 57.8
Actinidia05644 Actinidia chinensis HOM05D003009 ORTHO05D001701 2.7e-22 109.0 98 52.0
Lj1A1203T34 Lonicera japonica HOM05D003009 ORTHO05D001701 3.5e-22 108.6 106 52.8
unitig_22.g6231 Utricularia gibba HOM05D003009 ORTHO05D001701 6.6e-21 104.4 101 50.5
Nitab4.5_0009438g0020 Nicotiana tabacum HOM05D003009 ORTHO05D001701 8.7e-21 104.0 108 50.0
Nitab4.5_0001652g0150 Nicotiana tabacum HOM05D003009 ORTHO05D001701 1.9e-20 102.8 109 47.7
Hma1.2p1_0736F.1_g210750 Hydrangea macrophylla HOM05D003009 ORTHO05D001701 2.5e-20 102.4 99 52.5
Rhsim13G0179100 Rhododendron simsii HOM05D003009 ORTHO05D001701 2.5e-20 102.4 110 48.2
vmacro03876 Vaccinium macrocarpon HOM05D003009 ORTHO05D001701 4.3e-20 101.7 106 47.2
Sc24g0001000 Simmondsia chinensis HOM05D003009 ORTHO05D001701 7.3e-20 100.9 101 55.4
Cfa000485 Carpinus fangiana HOM05D003009 ORTHO05D001701 1.6e-19 99.8 103 52.4
CSS0013482 Camellia sinensis var. sinensis HOM05D003009 ORTHO05D001701 3.6e-19 98.6 102 49.0
Prupe.4G048800 Prunus persica HOM05D003009 ORTHO05D001701 8.1e-19 97.4 102 51.0
GSVIVG01007286001 Vitis vinifera HOM05D003009 ORTHO05D001701 1.8e-18 96.3 101 46.5
CiPaw.09G060900 Carya illinoinensis HOM05D003009 ORTHO05D001701 2.4e-18 95.9 94 52.1
HanXRQChr16g0516201 Helianthus annuus HOM05D003009 ORTHO05D001701 2.4e-18 95.9 109 45.0
Sopen02g022890 Solanum pennellii HOM05D003009 ORTHO05D001701 3.1e-18 95.5 107 46.7
Cfa002262 Carpinus fangiana HOM05D003009 ORTHO05D001701 4.0e-18 95.1 101 50.5
DCAR_004069 Daucus carota HOM05D003009 ORTHO05D001701 4.0e-18 95.1 106 47.2
EL10Ac8g20392 Beta vulgaris HOM05D003009 ORTHO05D001701 5.3e-18 94.7 104 50.0
MD10G1293100 Malus domestica HOM05D003009 ORTHO05D001701 5.3e-18 94.7 94 53.2
PSO832G2944 Papaver somniferum HOM05D003009 ORTHO05D001701 6.9e-18 94.4 98 49.0
Lsat_1_v5_gn_7_21560 Lactuca sativa HOM05D003009 ORTHO05D001701 1.2e-17 93.6 128 43.8
DCAR_008035 Daucus carota HOM05D003009 ORTHO05D001701 2.6e-17 92.4 98 48.0
Lsat_1_v5_gn_4_53840 Lactuca sativa HOM05D003009 ORTHO05D001701 2.6e-17 92.4 106 43.4
MD05G1338000 Malus domestica HOM05D003009 ORTHO05D001701 2.6e-17 92.4 94 51.1
CAN.G529.9 Capsicum annuum HOM05D000185 ORTHO05D001701 3.4e-17 92.0 114 42.1
AUR62017024 Chenopodium quinoa HOM05D003009 ORTHO05D001701 3.4e-17 92.0 101 48.5
Cc02_g13480 Coffea canephora HOM05D003009 ORTHO05D001701 3.4e-17 92.0 106 44.3
Potri.011G053600 Populus trichocarpa HOM05D003009 ORTHO05D001701 3.4e-17 92.0 96 50.0
Sopen02g022900 Solanum pennellii HOM05D003009 ORTHO05D001701 3.4e-17 92.0 105 45.7
Nitab4.5_0001652g0160 Nicotiana tabacum HOM05D003009 ORTHO05D001701 4.4e-17 91.7 108 44.4
ECA234G4352 Erigeron canadensis HOM05D003009 ORTHO05D001701 5.8e-17 91.3 110 44.5
Solyc02g078050.4 Solanum lycopersicum HOM05D003009 ORTHO05D001701 7.6e-17 90.9 107 45.8
COL.COLO4_31456 Corchorus olitorius HOM05D003009 ORTHO05D001701 9.9e-17 90.5 98 50.0
QL05p041061 Quercus lobata HOM05D003009 ORTHO05D001701 9.9e-17 90.5 96 50.0
Solyc02g078060.1 Solanum lycopersicum HOM05D003009 ORTHO05D001701 1.3e-16 90.1 113 44.2
CANSAT35G1820 Cannabis sativa HOM05D003009 ORTHO05D001701 1.7e-16 89.7 112 43.8
Nitab4.5_0001652g0140 Nicotiana tabacum HOM05D003009 ORTHO05D001701 1.7e-16 89.7 112 45.5
Duzib235G1045 Durio zibethinus HOM05D003009 ORTHO05D001701 2.2e-16 89.4 92 50.0
FAN25G2997 Fragaria x ananassa HOM05D003009 ORTHO05D001701 2.2e-16 89.4 114 43.0
HanXRQChr04g0124251 Helianthus annuus HOM05D003009 ORTHO05D001701 2.9e-16 89.0 129 41.1
Aqoxy1G02393 Aquilegia oxysepala HOM05D003009 ORTHO05D001701 3.8e-16 88.6 99 49.5
Duzib192G0967 Durio zibethinus HOM05D003009 ORTHO05D001701 3.8e-16 88.6 94 50.0
Peaxi162Scf00250g00037 Petunia axillaris HOM05D003009 ORTHO05D001701 3.8e-16 88.6 106 41.5
CAN.G529.8 Capsicum annuum HOM05D003009 ORTHO05D001701 4.9e-16 88.2 120 40.0
MELO3C002610.2 Cucumis melo HOM05D003009 ORTHO05D001701 4.9e-16 88.2 98 50.0
Potri.004G044700 Populus trichocarpa HOM05D003009 ORTHO05D001701 4.9e-16 88.2 96 46.9
MBI06_g23076_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 6.4e-16 87.8 101 43.6
PSO210G4623 Papaver somniferum HOM05D003009 ORTHO05D001701 6.4e-16 87.8 98 45.9
PGSC0003DMG400029698 Solanum tuberosum HOM05D003009 ORTHO05D001701 6.4e-16 87.8 113 42.5
FvH4_3g09040 Fragaria vesca HOM05D003009 ORTHO05D001701 8.4e-16 87.4 114 42.1
FAN11G0879 Fragaria x ananassa HOM05D003009 ORTHO05D001701 8.4e-16 87.4 114 42.1
Nitab4.5_0012561g0010 Nicotiana tabacum HOM05D003009 ORTHO05D001701 8.4e-16 87.4 112 45.5
Sabra04G0027800 Salix brachista HOM05D003009 ORTHO05D001701 8.4e-16 87.4 96 46.9
ClCG03G008180 Citrullus lanatus HOM05D003009 ORTHO05D001701 1.1e-15 87.0 98 50.0
FAN21G3284 Fragaria x ananassa HOM05D003009 ORTHO05D001701 1.1e-15 87.0 114 42.1
Manes.17G046500 Manihot esculenta HOM05D003009 ORTHO05D001701 1.1e-15 87.0 94 47.9
TAR627G0353 Trochodendron aralioides HOM05D003009 ORTHO05D001701 1.1e-15 87.0 97 49.5
FAN16G3267 Fragaria x ananassa HOM05D003009 ORTHO05D001701 1.4e-15 86.7 114 42.1
Lalb_Chr20g0121811 Lupinus albus HOM05D003009 ORTHO05D001701 1.4e-15 86.7 103 50.5
ClCG01G023040 Citrullus lanatus HOM05D003009 ORTHO05D001701 1.9e-15 86.3 94 47.9
CsaV3_6G050170 Cucumis sativus L. HOM05D003009 ORTHO05D001701 1.9e-15 86.3 94 47.9
Sabra11G0037400 Salix brachista HOM05D003009 ORTHO05D001701 1.9e-15 86.3 96 44.8
MELO3C007279.2 Cucumis melo HOM05D003009 ORTHO05D001701 2.4e-15 85.9 94 47.9
Eucgr.D00613 Eucalyptus grandis HOM05D003009 ORTHO05D001701 2.4e-15 85.9 95 50.5
PGR004G0870 Punica granatum HOM05D003009 ORTHO05D001701 3.2e-15 85.5 95 47.4
Ah.14g089490 Amaranthus hybridus HOM05D003009 ORTHO05D001701 5.4e-15 84.7 104 47.1
RcHm_v2.0_Chr5g0008631 Rosa chinensis HOM05D003009 ORTHO05D001701 5.4e-15 84.7 114 42.1
Sed0006317 Sechium edule HOM05D003009 ORTHO05D001701 5.4e-15 84.7 94 46.8
Gohir.A06G128400 Gossypium hirsutum HOM05D003009 ORTHO05D001701 7.1e-15 84.3 94 47.9
Gohir.D06G132500 Gossypium hirsutum HOM05D003009 ORTHO05D001701 7.1e-15 84.3 94 47.9
Gorai.010G154300 Gossypium raimondii HOM05D003009 ORTHO05D001701 7.1e-15 84.3 94 47.9
Sed0027600 Sechium edule HOM05D003009 ORTHO05D001701 7.1e-15 84.3 98 48.0
THA.LOC104812275 Tarenaya hassleriana HOM05D003009 ORTHO05D001701 7.1e-15 84.3 97 44.3
CsaV3_1G012370 Cucumis sativus L. HOM05D003009 ORTHO05D001701 9.3e-15 84.0 98 46.9
QL05p041024 Quercus lobata HOM05D003009 ORTHO05D001701 9.3e-15 84.0 94 45.7
Atru.chr10.1864 Acer truncatum HOM05D003009 ORTHO05D001701 1.2e-14 83.6 96 46.9
Manes.16G028850 Manihot esculenta HOM05D003009 ORTHO05D001701 2.7e-14 82.4 97 45.4
Gohir.A05G161100 Gossypium hirsutum HOM05D003009 ORTHO05D001701 3.5e-14 82.0 103 45.6
Gorai.009G168900 Gossypium raimondii HOM05D003009 ORTHO05D001701 3.5e-14 82.0 103 45.6
Peaxi162Scf00250g00058 Petunia axillaris HOM05D003009 ORTHO05D001701 3.5e-14 82.0 97 47.4
Peaxi162Scf74053g00003 Petunia axillaris HOM05D003009 ORTHO05D001701 3.5e-14 82.0 97 47.4
Gohir.D05G163801 Gossypium hirsutum HOM05D003009 ORTHO05D001701 4.6e-14 81.6 103 45.6
Cpa.g.sc27.37 Carica papaya HOM05D003009 ORTHO05D001701 6.0e-14 81.3 94 46.8
ECA236G1979 Erigeron canadensis HOM05D003009 ORTHO05D001701 6.0e-14 81.3 130 40.0
ATR0737G038 Amborella trichopoda HOM05D003009 ORTHO05D001701 7.9e-14 80.9 105 45.7
Duzib160G0415 Durio zibethinus HOM05D003009 ORTHO05D001701 7.9e-14 80.9 94 45.7
Thecc.06G185700 Theobroma cacao HOM05D003009 ORTHO05D001701 1.0e-13 80.5 94 45.7
TPR.G40408 Trifolium pratense HOM05D003009 ORTHO05D001701 1.0e-13 80.5 94 48.9
Phvul.002G229200 Phaseolus vulgaris HOM05D003009 ORTHO05D001701 1.3e-13 80.1 94 46.8
VMungo0251G3565 Vigna mungo HOM05D003009 ORTHO05D001701 1.3e-13 80.1 104 47.1
Lj6g0021953 Lotus japonicus HOM05D003009 ORTHO05D001701 1.7e-13 79.7 94 46.8
Carub.0004s1545 Capsella rubella HOM05D003009 ORTHO05D001701 2.3e-13 79.3 98 48.0
Medtr4g088735 Medicago truncatula HOM05D003009 ORTHO05D001701 2.3e-13 79.3 95 47.4
vmacro15914 Vaccinium macrocarpon HOM05D003009 ORTHO05D001701 2.3e-13 79.3 96 44.8
Glyma.13G178700 Glycine max HOM05D003009 ORTHO05D001701 3.0e-13 79.0 102 45.1
Psat7g114200 Pisum sativum HOM05D003009 ORTHO05D001701 6.6e-13 77.8 94 47.9
Sc05g0007600 Simmondsia chinensis HOM05D003009 ORTHO05D001701 1.5e-12 76.6 102 43.1
TPR.G33106 Trifolium pratense HOM05D003009 ORTHO05D001701 1.5e-12 76.6 97 47.4
MBI07_g30189_MAGBIO Magnolia biondii HOM05D002105 ORTHO05D001271 2.5e-12 75.9 96 44.8
AT2G34700 Arabidopsis thaliana HOM05D003009 ORTHO05D001701 3.3e-12 75.5 121 38.8
Sp4g16980 Schrenkiella parvula HOM05D003009 ORTHO05D001701 3.3e-12 75.5 122 41.8
TPR.G7042 Trifolium pratense HOM05D003009 ORTHO05D001701 3.3e-12 75.5 94 47.9
Rhsim02G0131700 Rhododendron simsii HOM05D003009 ORTHO05D001701 4.3e-12 75.1 94 44.7
Rhsim02G0131200 Rhododendron simsii HOM05D003009 ORTHO05D001701 5.6e-12 74.7 94 44.7
A04p25990 Brassica napus HOM05D003009 ORTHO05D001701 7.4e-12 74.3 98 42.9
BraA04t18102Z Brassica rapa HOM05D003009 ORTHO05D001701 7.4e-12 74.3 98 42.9
BcaC02g07775 Brassica carinata HOM05D003009 ORTHO05D001701 9.6e-12 73.9 98 42.9
C04p63290 Brassica napus HOM05D003009 ORTHO05D001701 9.6e-12 73.9 98 42.9
BolC4t27803H Brassica oleracea HOM05D003009 ORTHO05D001701 9.6e-12 73.9 98 42.9
Medtr4g046767 Medicago truncatula HOM05D003009 ORTHO05D001701 9.6e-12 73.9 94 45.7
Aa31LG6G5170 Aethionema arabicum HOM05D003009 ORTHO05D001701 1.6e-11 73.2 99 40.4
Ca_18551_v3 Cicer arietinum L. HOM05D003009 ORTHO05D001701 2.1e-11 72.8 113 42.5
Aa31sc225G30 Aethionema arabicum HOM05D003009 ORTHO05D001701 2.8e-11 72.4 94 45.7
Haze_06431 Corylus avellana HOM05D003009 ORTHO05D001701 2.8e-11 72.4 64 53.1
BcaB02g09517 Brassica carinata HOM05D003009 ORTHO05D001701 3.6e-11 72.0 121 37.2
BcaB02g09518 Brassica carinata HOM05D003009 ORTHO05D001701 3.6e-11 72.0 121 37.2
Carub.0004s1639 Capsella rubella HOM05D003009 ORTHO05D001701 6.2e-11 71.2 121 36.4
Aa31sc225G10 Aethionema arabicum HOM05D003009 ORTHO05D001701 8.1e-11 70.9 99 39.4
A05p10940 Brassica napus HOM05D003009 ORTHO05D001701 8.1e-11 70.9 119 37.0
BraA05t20040Z Brassica rapa HOM05D003009 ORTHO05D001701 8.1e-11 70.9 119 37.0
CARHR027780 Cardamine hirsuta HOM05D003009 ORTHO05D001701 8.1e-11 70.9 106 43.4
Lalb_Chr16g0383821 Lupinus albus HOM05D003009 ORTHO05D001701 8.1e-11 70.9 96 42.7
Medtr4g046780 Medicago truncatula HOM05D003009 ORTHO05D001701 8.1e-11 70.9 97 44.3
PGR042G0148 Punica granatum HOM05D003009 ORTHO05D001701 1.1e-10 70.5 67 49.3
Carub.0001s2673 Capsella rubella HOM05D003009 ORTHO05D001701 1.4e-10 70.1 99 44.4
Thhalv10017961m.g Eutrema salsugineum HOM05D003009 ORTHO05D001701 1.8e-10 69.7 121 36.4
Medtr2g097240 Medicago truncatula HOM05D003009 ORTHO05D001701 2.4e-10 69.3 102 44.1
BcaC02g11549 Brassica carinata HOM05D003009 ORTHO05D001701 3.1e-10 68.9 121 35.5
Eucgr.E03269 Eucalyptus grandis HOM05D003009 ORTHO05D001701 4.0e-10 68.6 61 57.4
Lalb_Chr18g0059561 Lupinus albus HOM05D003009 ORTHO05D001701 5.3e-10 68.2 95 41.1
Medtr5g047890 Medicago truncatula HOM05D003009 ORTHO05D001701 5.3e-10 68.2 104 43.3
Sed0027489 Sechium edule HOM05D003009 ORTHO05D001701 5.3e-10 68.2 101 43.6
C04p14040 Brassica napus HOM05D003009 ORTHO05D001701 6.9e-10 67.8 121 34.7
BolC4t22995H Brassica oleracea HOM05D003009 ORTHO05D001701 6.9e-10 67.8 121 34.7
AL4G29510 Arabidopsis lyrata HOM05D003009 ORTHO05D001701 1.5e-09 66.6 98 40.8
BcaB03g13938 Brassica carinata HOM05D003009 ORTHO05D001701 2.0e-09 66.2 99 43.4
AT2G33790 Arabidopsis thaliana HOM05D003009 ORTHO05D001701 2.6e-09 65.9 98 41.8
Sp4g16170 Schrenkiella parvula HOM05D003009 ORTHO05D001701 2.6e-09 65.9 98 39.8
TPR.G23035 Trifolium pratense HOM05D003009 ORTHO05D001701 2.6e-09 65.9 72 51.4
Medtr1g055415 Medicago truncatula HOM05D003009 ORTHO05D001701 3.4e-09 65.5 104 42.3
Sp1g24490 Schrenkiella parvula HOM05D003009 ORTHO05D001701 4.5e-09 65.1 106 40.6
arahy.Tifrunner.gnm1.ann1.X3Z0KH Arachis hypogaea HOM05D003009 ORTHO05D008148 9.9e-09 63.9 62 53.2
Medtr3g012020 Medicago truncatula HOM05D003009 ORTHO05D001701 9.9e-09 63.9 107 38.3
SalBow8G0350 Salvia bowleyana HOM05D003009 ORTHO05D001701 9.9e-09 63.9 105 41.0
SalBow8G5468 Salvia bowleyana HOM05D003009 ORTHO05D001701 9.9e-09 63.9 105 41.0
Prupe.7G084000 Prunus persica HOM05D003009 ORTHO05D001701 1.7e-08 63.2 125 38.4
AT1G28290 Arabidopsis thaliana HOM05D003009 ORTHO05D001701 2.2e-08 62.8 98 40.8
SalBow8G4678 Salvia bowleyana HOM05D003009 ORTHO05D001701 6.4e-08 61.2 67 47.8
Medtr8g092230 Medicago truncatula HOM05D003009 ORTHO05D001701 8.4e-08 60.8 92 41.3
Medtr4g066680 Medicago truncatula HOM05D003009 ORTHO05D001701 1.1e-07 60.5 94 41.5
TAR636G0399 Trochodendron aralioides HOM05D002284 ORTHO05D002427 1.9e-07 59.7 88 39.8
TAR636G1141 Trochodendron aralioides HOM05D002284 ORTHO05D002427 7.1e-07 57.8 84 39.3
BcaC02g07773 Brassica carinata HOM05D003009 ORTHO05D001701 2.1e-06 56.2 75 42.7
C04p63300 Brassica napus HOM05D003009 ORTHO05D001701 2.1e-06 56.2 75 42.7
BolC4t27804H Brassica oleracea HOM05D003009 ORTHO05D001701 2.1e-06 56.2 75 42.7
TPR.G31168 Trifolium pratense HOM05D003009 ORTHO05D001701 3.5e-06 55.5 73 49.3


User provided reference genes

Program Settings