Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold22G09688 Striga asiatica HOM05D000077 ORTHO05D406699 4.5e-85 317.8 149 100.0
SGA_v2.0_scaffold48G18083 Striga asiatica HOM05D000077 ORTHO05D001453 1.5e-16 90.1 188 40.4
Sc01g0009650 Simmondsia chinensis HOM05D000077 ORTHO05D001453 2.1e-10 69.7 188 31.4
Oeu042331.1 Olea europaea HOM05D000077 ORTHO05D001453 2.8e-10 69.3 188 31.4
Aa31LG2G930 Aethionema arabicum HOM05D000077 ORTHO05D001453 4.8e-10 68.6 200 30.0
Lj7P511T22 Lonicera japonica HOM05D000077 ORTHO05D001453 4.8e-10 68.6 170 34.7
SalBow1G4875 Salvia bowleyana HOM05D000077 ORTHO05D001453 4.8e-10 68.6 175 33.7
CSS0033566 Camellia sinensis var. sinensis HOM05D000077 ORTHO05D001453 6.2e-10 68.2 188 30.9
Duzib068G0876 Durio zibethinus HOM05D000077 ORTHO05D001453 1.1e-09 67.4 191 31.9
Gorai.008G247600 Gossypium raimondii HOM05D000077 ORTHO05D001453 1.4e-09 67.0 187 31.0
AL2G11520 Arabidopsis lyrata HOM05D000077 ORTHO05D001453 1.8e-09 66.6 187 29.9
Rhsim07G0089600 Rhododendron simsii HOM05D000077 ORTHO05D001453 1.8e-09 66.6 188 31.4
Dinv37628 Davidia involucrata HOM05D000077 ORTHO05D001453 2.4e-09 66.2 194 29.4
Dinv38929 Davidia involucrata HOM05D000077 ORTHO05D001453 2.4e-09 66.2 188 31.9
RcHm_v2.0_Chr1g0355891 Rosa chinensis HOM05D000077 ORTHO05D001453 2.4e-09 66.2 163 31.9
SalBow3G3716 Salvia bowleyana HOM05D000077 ORTHO05D001453 3.1e-09 65.9 190 31.6
CAN.G774.57 Capsicum annuum HOM05D000077 ORTHO05D001453 4.0e-09 65.5 188 31.4
Carub.0002s0114 Capsella rubella HOM05D000077 ORTHO05D001453 5.3e-09 65.1 187 28.3
Lalb_Chr16g0390051 Lupinus albus HOM05D000077 ORTHO05D001453 5.3e-09 65.1 190 30.5
PSO478G0788 Papaver somniferum HOM05D000077 ORTHO05D001453 5.3e-09 65.1 190 32.6
PSO782G4844 Papaver somniferum HOM05D000077 ORTHO05D001453 5.3e-09 65.1 190 32.6
PGSC0003DMG400012202 Solanum tuberosum HOM05D000077 ORTHO05D001453 5.3e-09 65.1 188 30.3
CARHR047630 Cardamine hirsuta HOM05D000077 ORTHO05D001453 6.9e-09 64.7 195 28.7
Gohir.A12G230300 Gossypium hirsutum HOM05D000077 ORTHO05D001453 6.9e-09 64.7 187 30.5
Solyc08g081220.1 Solanum lycopersicum HOM05D000077 ORTHO05D001453 6.9e-09 64.7 188 30.3
Sopen08g029530 Solanum pennellii HOM05D000077 ORTHO05D001453 6.9e-09 64.7 188 30.3
Gohir.A08G183500 Gossypium hirsutum HOM05D000077 ORTHO05D001453 9.0e-09 64.3 187 30.5
Sp2g00940 Schrenkiella parvula HOM05D000077 ORTHO05D001453 9.0e-09 64.3 183 31.7
DCAR_000623 Daucus carota HOM05D000077 ORTHO05D001453 1.2e-08 63.9 189 31.7
Nitab4.5_0001615g0040 Nicotiana tabacum HOM05D000077 ORTHO05D001453 1.2e-08 63.9 188 30.3
Gorai.004G213300 Gossypium raimondii HOM05D000077 ORTHO05D001453 1.5e-08 63.5 187 29.9
Oeu060250.1 Olea europaea HOM05D000077 ORTHO05D001453 1.5e-08 63.5 188 31.9
Thecc.03G281200 Theobroma cacao HOM05D000077 ORTHO05D001453 1.5e-08 63.5 187 31.0
CSS0048711 Camellia sinensis var. sinensis HOM05D000077 ORTHO05D001453 2.0e-08 63.2 189 31.7
Gohir.D08G202200 Gossypium hirsutum HOM05D000077 ORTHO05D001453 2.0e-08 63.2 187 29.4
Lj2P183T30 Lonicera japonica HOM05D000077 ORTHO05D001453 2.0e-08 63.2 169 32.0
MSTRG.13846 Avicennia marina HOM05D000077 ORTHO05D001453 2.6e-08 62.8 188 29.8
Oeu010618.1 Olea europaea HOM05D000077 ORTHO05D001453 2.6e-08 62.8 188 30.3
Peaxi162Scf00119g10131 Petunia axillaris HOM05D000077 ORTHO05D001453 2.6e-08 62.8 188 28.2
Duzib084G1336 Durio zibethinus HOM05D000077 ORTHO05D001453 3.4e-08 62.4 191 28.3
Gohir.D12G231400 Gossypium hirsutum HOM05D000077 ORTHO05D001453 3.4e-08 62.4 187 30.5
MBI17_g35255_MAGBIO Magnolia biondii HOM05D000077 ORTHO05D001453 3.4e-08 62.4 187 31.0
Thecc.01G357900 Theobroma cacao HOM05D000077 ORTHO05D001453 3.4e-08 62.4 188 32.4
CiPaw.12G092000 Carya illinoinensis HOM05D000077 ORTHO05D001453 4.5e-08 62.0 190 30.5
Migut.A00740 Erythranthe guttata HOM05D000077 ORTHO05D001453 4.5e-08 62.0 190 32.1
FAN03G0196 Fragaria x ananassa HOM05D000077 ORTHO05D001453 4.5e-08 62.0 188 31.4
VMungo0251G1296 Vigna mungo HOM05D000077 ORTHO05D001453 4.5e-08 62.0 192 31.8
Ciclev10019633m.g Citrus clementina HOM05D000077 ORTHO05D001453 5.8e-08 61.6 190 32.1
PGSC0003DMG400046813 Solanum tuberosum HOM05D000077 ORTHO05D001453 5.8e-08 61.6 188 30.9
GSVIVG01026947001 Vitis vinifera HOM05D000077 ORTHO05D001453 5.8e-08 61.6 146 32.9
CAN.G78.89 Capsicum annuum HOM05D000077 ORTHO05D001453 7.6e-08 61.2 183 30.6
DCAR_004623 Daucus carota HOM05D000077 ORTHO05D001453 7.6e-08 61.2 190 30.5
Glyma.05G208900 Glycine max HOM05D000077 ORTHO05D001453 7.6e-08 61.2 188 30.3
Glyma.05G208981 Glycine max HOM05D000077 ORTHO05D001453 7.6e-08 61.2 188 30.3
AT1G63710 Arabidopsis thaliana HOM05D000077 ORTHO05D001453 9.9e-08 60.8 187 27.8
Cfa003908 Carpinus fangiana HOM05D000077 ORTHO05D001453 9.9e-08 60.8 188 30.3
Oeu019180.1 Olea europaea HOM05D000077 ORTHO05D001453 9.9e-08 60.8 188 28.2
Migut.B01765 Erythranthe guttata HOM05D000077 ORTHO05D001453 1.3e-07 60.5 187 32.1
MD07G1135500 Malus domestica HOM05D000077 ORTHO05D001453 1.3e-07 60.5 188 31.4
unitig_749.g13785 Utricularia gibba HOM05D000077 ORTHO05D001453 1.3e-07 60.5 187 29.9
Thhalv10023410m.g Eutrema salsugineum HOM05D000077 ORTHO05D001453 1.7e-07 60.1 187 30.5
FAN13G2806 Fragaria x ananassa HOM05D000077 ORTHO05D001453 1.7e-07 60.1 189 32.3
Phvul.002G290700 Phaseolus vulgaris HOM05D000077 ORTHO05D001453 1.7e-07 60.1 188 30.3
Solyc01g094750.4 Solanum lycopersicum HOM05D000077 ORTHO05D001453 1.7e-07 60.1 188 29.8
Sopen01g038530 Solanum pennellii HOM05D000077 ORTHO05D001453 1.7e-07 60.1 188 29.8
FvH4_7g14480 Fragaria vesca HOM05D000077 ORTHO05D001453 2.2e-07 59.7 188 31.4
FAN06G2801 Fragaria x ananassa HOM05D000077 ORTHO05D001453 2.2e-07 59.7 188 31.4
Nitab4.5_0002975g0080 Nicotiana tabacum HOM05D000077 ORTHO05D001453 2.2e-07 59.7 188 29.3
Prupe.2G171800 Prunus persica HOM05D000077 ORTHO05D001453 2.2e-07 59.7 188 30.9
Cc02_g38150 Coffea canephora HOM05D000077 ORTHO05D001453 2.9e-07 59.3 189 32.8
Haze_08798 Corylus avellana HOM05D000077 ORTHO05D001453 2.9e-07 59.3 190 28.4
Eucgr.D01839 Eucalyptus grandis HOM05D000077 ORTHO05D001453 2.9e-07 59.3 193 30.6
FvH4_5g02700 Fragaria vesca HOM05D000077 ORTHO05D001453 2.9e-07 59.3 189 31.2
FAN18G0562 Fragaria x ananassa HOM05D000077 ORTHO05D001453 2.9e-07 59.3 189 31.2
ECA246G3732 Erigeron canadensis HOM05D000077 ORTHO05D001453 3.8e-07 58.9 187 31.0
FAN08G2528 Fragaria x ananassa HOM05D000077 ORTHO05D001453 3.8e-07 58.9 189 30.2
Lj3g0010236 Lotus japonicus HOM05D000077 ORTHO05D001453 3.8e-07 58.9 188 30.3
Prupe.5G102600 Prunus persica HOM05D000077 ORTHO05D001453 3.8e-07 58.9 190 30.0
PGR031G0353 Punica granatum HOM05D000077 ORTHO05D001453 3.8e-07 58.9 188 29.8
Sed0024654 Sechium edule HOM05D000077 ORTHO05D001453 3.8e-07 58.9 189 31.7
THA.LOC104809382 Tarenaya hassleriana HOM05D000077 ORTHO05D001453 3.8e-07 58.9 188 30.9
vmacro20934 Vaccinium macrocarpon HOM05D000077 ORTHO05D001453 3.8e-07 58.9 187 32.6
CANSAT56G4038 Cannabis sativa HOM05D000077 ORTHO05D001453 4.9e-07 58.5 188 30.9
ECA236G5073 Erigeron canadensis HOM05D000077 ORTHO05D001453 4.9e-07 58.5 188 30.9
FAN10G1357 Fragaria x ananassa HOM05D000077 ORTHO05D001453 4.9e-07 58.5 188 30.9
Lalb_Chr17g0339521 Lupinus albus HOM05D000077 ORTHO05D001453 4.9e-07 58.5 188 29.3
Peaxi162Scf00020g00076 Petunia axillaris HOM05D000077 ORTHO05D001453 4.9e-07 58.5 188 29.3
RcHm_v2.0_Chr7g0197251 Rosa chinensis HOM05D000077 ORTHO05D001453 4.9e-07 58.5 192 30.7
Zm00001eb074170 Zea mays HOM05D000077 ORTHO05D001453 4.9e-07 58.5 195 33.3
Cpa.g.sc214.17 Carica papaya HOM05D000077 ORTHO05D001453 6.4e-07 58.2 188 29.3
CDE06G0745 Ceratophyllum demersum HOM05D000077 ORTHO05D001453 6.4e-07 58.2 190 30.5
Cc08_g14880 Coffea canephora HOM05D000077 ORTHO05D001453 6.4e-07 58.2 188 30.3
Glyma.08G015600 Glycine max HOM05D000077 ORTHO05D001453 6.4e-07 58.2 188 30.9
Hma1.2p1_0780F.1_g216790 Hydrangea macrophylla HOM05D000077 ORTHO05D001453 6.4e-07 58.2 188 31.9
Lsat_1_v5_gn_3_6461 Lactuca sativa HOM05D000077 ORTHO05D001453 6.4e-07 58.2 189 31.7
Os04g0560100 Oryza sativa ssp. japonica HOM05D000077 ORTHO05D001453 6.4e-07 58.2 195 29.7
QL08p048232 Quercus lobata HOM05D000077 ORTHO05D001453 6.4e-07 58.2 188 30.3
Ca_17520_v3 Cicer arietinum L. HOM05D000077 ORTHO05D001453 8.4e-07 57.8 188 29.3
HanXRQChr17g0533201 Helianthus annuus HOM05D000077 ORTHO05D001453 8.4e-07 57.8 187 31.6
Os02g0666500 Oryza sativa ssp. japonica HOM05D000077 ORTHO05D001453 8.4e-07 57.8 192 31.2
Phvul.010G099900 Phaseolus vulgaris HOM05D000077 ORTHO05D001453 8.4e-07 57.8 188 29.3
TAR636G1506 Trochodendron aralioides HOM05D000077 ORTHO05D001453 8.4e-07 57.8 188 28.2
unitig_26.g9739 Utricularia gibba HOM05D000077 ORTHO05D001453 8.4e-07 57.8 188 30.3
Carub.0004s2867 Capsella rubella HOM05D000077 ORTHO05D001453 1.1e-06 57.4 189 28.0
AUR62017187 Chenopodium quinoa HOM05D000077 ORTHO05D001453 1.1e-06 57.4 187 29.9
Haze_15523 Corylus avellana HOM05D000077 ORTHO05D001453 1.1e-06 57.4 188 29.3
Duzib138G1573 Durio zibethinus HOM05D000077 ORTHO05D001453 1.1e-06 57.4 190 30.0
Gohir.D11G093900 Gossypium hirsutum HOM05D000077 ORTHO05D001453 1.1e-06 57.4 188 30.9
Gorai.007G100300 Gossypium raimondii HOM05D000077 ORTHO05D001453 1.1e-06 57.4 188 30.9
Sabra14G0062100 Salix brachista HOM05D000077 ORTHO05D001453 1.1e-06 57.4 188 30.9
TAR374G0505 Trochodendron aralioides HOM05D000077 ORTHO05D001453 1.1e-06 57.4 188 30.3
Atru.chr9.2169 Acer truncatum HOM05D000077 ORTHO05D001453 1.4e-06 57.0 53 52.8
TAR629G0822 Trochodendron aralioides HOM05D000077 ORTHO05D001453 1.4e-06 57.0 193 30.1
Actinidia02838 Actinidia chinensis HOM05D000077 ORTHO05D001453 1.9e-06 56.6 200 31.0
CDE08G1008 Ceratophyllum demersum HOM05D000077 ORTHO05D001453 1.9e-06 56.6 188 29.3
Ca_23616_v3 Cicer arietinum L. HOM05D000077 ORTHO05D001453 1.9e-06 56.6 187 27.8
FAN06G4498 Fragaria x ananassa HOM05D000077 ORTHO05D001453 1.9e-06 56.6 188 30.3
Nitab4.5_0000583g0170 Nicotiana tabacum HOM05D000077 ORTHO05D001453 1.9e-06 56.6 188 29.3
Nitab4.5_0006018g0010 Nicotiana tabacum HOM05D000077 ORTHO05D001453 1.9e-06 56.6 188 29.3
Zm00001eb249960 Zea mays HOM05D000077 ORTHO05D001453 1.9e-06 56.6 192 32.8
Aa31LG1G27380 Aethionema arabicum HOM05D000077 ORTHO05D001453 2.4e-06 56.2 189 29.1
CARHR141240 Cardamine hirsuta HOM05D000077 ORTHO05D001453 2.4e-06 56.2 189 28.6
Duzib133G1277 Durio zibethinus HOM05D000077 ORTHO05D001453 2.4e-06 56.2 188 30.9
Migut.E01083 Erythranthe guttata HOM05D000077 ORTHO05D001453 2.4e-06 56.2 190 30.5
FAN01G2589 Fragaria x ananassa HOM05D000077 ORTHO05D001453 2.4e-06 56.2 188 30.3
Gohir.A08G131600 Gossypium hirsutum HOM05D000077 ORTHO05D001453 2.4e-06 56.2 190 30.0
Lj4g0014092 Lotus japonicus HOM05D000077 ORTHO05D001453 2.4e-06 56.2 190 28.9
Manes.05G033400 Manihot esculenta HOM05D000077 ORTHO05D001453 2.4e-06 56.2 188 31.4
Atru.chr5.508 Acer truncatum HOM05D000077 ORTHO05D001453 3.2e-06 55.8 52 55.8
Ah.02g112460 Amaranthus hybridus HOM05D000077 ORTHO05D001453 3.2e-06 55.8 188 29.8
MSTRG.17275 Avicennia marina HOM05D000077 ORTHO05D001453 3.2e-06 55.8 188 31.9
Cfa012212 Carpinus fangiana HOM05D000077 ORTHO05D001453 3.2e-06 55.8 192 27.6
AUR62010695 Chenopodium quinoa HOM05D000077 ORTHO05D001453 3.2e-06 55.8 187 29.9
Gohir.A11G089600 Gossypium hirsutum HOM05D000077 ORTHO05D001453 3.2e-06 55.8 188 30.3
Potri.003G129100 Populus trichocarpa HOM05D000077 ORTHO05D001453 3.2e-06 55.8 190 27.4
CiPaw.01G062700 Carya illinoinensis HOM05D000077 ORTHO05D001453 4.2e-06 55.5 188 28.7
CiPaw.11G133700 Carya illinoinensis HOM05D000077 ORTHO05D001453 4.2e-06 55.5 189 28.6
CDE05G0632 Ceratophyllum demersum HOM05D000077 ORTHO05D001453 4.2e-06 55.5 188 28.7
DCAR_008613 Daucus carota HOM05D000077 ORTHO05D001453 4.2e-06 55.5 189 31.7
arahy.Tifrunner.gnm1.ann1.QL4ZS9 Arachis hypogaea HOM05D000077 ORTHO05D001453 5.5e-06 55.1 188 29.8
arahy.Tifrunner.gnm1.ann1.XKLY96 Arachis hypogaea HOM05D000077 ORTHO05D001453 5.5e-06 55.1 188 29.8
Glyma.03G008100 Glycine max HOM05D000077 ORTHO05D001453 5.5e-06 55.1 189 29.6
Rhsim01G0158800 Rhododendron simsii HOM05D000077 ORTHO05D001453 5.5e-06 55.1 187 31.0
VMungo0331G0723 Vigna mungo HOM05D000077 ORTHO05D001453 5.5e-06 55.1 188 28.7
MD01G1064900 Malus domestica HOM05D000077 ORTHO05D001453 7.1e-06 54.7 188 29.3
Nn1g01555 Nelumbo nucifera HOM05D000077 ORTHO05D001453 7.1e-06 54.7 188 30.9
HPP92_005028 Vanilla planifolia HOM05D000077 ORTHO05D001453 7.1e-06 54.7 190 29.5
Gorai.004G159000 Gossypium raimondii HOM05D000077 ORTHO05D001453 9.3e-06 54.3 190 29.5
MBI18_g40973_MAGBIO Magnolia biondii HOM05D000077 ORTHO05D001453 9.3e-06 54.3 187 29.4
MD06G1086100 Malus domestica HOM05D000077 ORTHO05D001453 9.3e-06 54.3 193 29.5
MD14G1107200 Malus domestica HOM05D000077 ORTHO05D001453 9.3e-06 54.3 191 29.8
Sabra03G0091800 Salix brachista HOM05D000077 ORTHO05D001453 9.3e-06 54.3 190 26.8


User provided reference genes

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