Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold229G43342 Striga asiatica HOM05D005055 ORTHO05D401883 1.3e-67 259.6 133 100.0
SGA_v2.0_scaffold73G24201 Striga asiatica HOM05D005055 ORTHO05D006327 1.7e-14 83.2 49 83.7
MSTRG.6806 Avicennia marina HOM05D005055 ORTHO05D006327 2.2e-14 82.8 46 82.6
SalBow8G2403 Salvia bowleyana HOM05D005055 ORTHO05D006327 3.5e-12 75.5 46 76.1
Rhsim06G0205400 Rhododendron simsii HOM05D005055 ORTHO05D006327 4.5e-12 75.1 49 71.4
CANSAT35G0899 Cannabis sativa HOM05D005055 ORTHO05D006327 5.9e-12 74.7 49 71.4
Migut.M00745 Erythranthe guttata HOM05D005055 ORTHO05D006327 7.8e-12 74.3 46 78.3
vmacro11912 Vaccinium macrocarpon HOM05D005055 ORTHO05D006327 7.8e-12 74.3 49 69.4
Oeu025338.1 Olea europaea HOM05D005055 ORTHO05D006327 1.0e-11 73.9 52 71.2
Solyc12g014190.2 Solanum lycopersicum HOM05D005055 ORTHO05D006327 1.7e-11 73.2 47 72.3
Sopen12g005980 Solanum pennellii HOM05D005055 ORTHO05D006327 1.7e-11 73.2 47 72.3
PGSC0003DMG400015380 Solanum tuberosum HOM05D005055 ORTHO05D006327 1.7e-11 73.2 47 72.3
Dinv14969 Davidia involucrata HOM05D005055 ORTHO05D006327 2.3e-11 72.8 48 68.8
MD11G1259500 Malus domestica HOM05D005055 ORTHO05D006327 2.9e-11 72.4 49 71.4
Cc05_g11380 Coffea canephora HOM05D005055 ORTHO05D006327 3.9e-11 72.0 52 67.3
Sc16g0007450 Simmondsia chinensis HOM05D005055 ORTHO05D006327 6.6e-11 71.2 51 66.7
Gohir.A04G038500 Gossypium hirsutum HOM05D005055 ORTHO05D006327 8.6e-11 70.9 57 64.9
Thecc.07G105000 Theobroma cacao HOM05D005055 ORTHO05D006327 8.6e-11 70.9 49 69.4
Nitab4.5_0000035g0040 Nicotiana tabacum HOM05D005055 ORTHO05D006327 1.1e-10 70.5 47 70.2
Nitab4.5_0005440g0050 Nicotiana tabacum HOM05D005055 ORTHO05D006327 1.1e-10 70.5 47 70.2
Duzib213G0103 Durio zibethinus HOM05D005055 ORTHO05D006327 1.5e-10 70.1 49 69.4
FvH4_3g18660 Fragaria vesca HOM05D005055 ORTHO05D006327 1.5e-10 70.1 45 73.3
Prupe.4G170400 Prunus persica HOM05D005055 ORTHO05D006327 2.5e-10 69.3 49 67.3
RcHm_v2.0_Chr7g0217341 Rosa chinensis HOM05D005055 ORTHO05D006327 2.5e-10 69.3 45 73.3
COL.COLO4_17607 Corchorus olitorius HOM05D000878 ORTHO05D006327 3.3e-10 68.9 49 67.3
RcHm_v2.0_Chr5g0031481 Rosa chinensis HOM05D005055 ORTHO05D006327 3.3e-10 68.9 45 73.3
Atru.chr2.2244 Acer truncatum HOM05D005055 ORTHO05D006327 4.3e-10 68.6 52 65.4
CiPaw.11G163000 Carya illinoinensis HOM05D005055 ORTHO05D006327 4.3e-10 68.6 49 67.3
Gorai.009G372500 Gossypium raimondii HOM05D005055 ORTHO05D006327 5.6e-10 68.2 57 63.2
MD03G1240200 Malus domestica HOM05D005055 ORTHO05D006327 5.6e-10 68.2 46 69.6
unitig_85.g27415 Utricularia gibba HOM05D005055 ORTHO05D006327 5.6e-10 68.2 43 74.4
CAN.G292.8 Capsicum annuum HOM05D005055 ORTHO05D006327 9.5e-10 67.4 47 66.0
Manes.15G092000 Manihot esculenta HOM05D005055 ORTHO05D006327 9.5e-10 67.4 47 68.1
GSVIVG01014230001 Vitis vinifera HOM05D005055 ORTHO05D006327 9.5e-10 67.4 52 65.4
Ah.06g185120 Amaranthus hybridus HOM05D005055 ORTHO05D006327 1.2e-09 67.0 48 66.7
Peaxi162Scf01503g00020 Petunia axillaris HOM05D005055 ORTHO05D006327 1.2e-09 67.0 51 66.7
ECA240G2410 Erigeron canadensis HOM05D005055 ORTHO05D006327 1.6e-09 66.6 49 65.3
Ciclev10008222m.g Citrus clementina HOM05D005055 ORTHO05D006327 2.1e-09 66.2 49 67.3
Gohir.D05G344500 Gossypium hirsutum HOM05D005055 ORTHO05D006327 2.1e-09 66.2 57 61.4
QL08p026888 Quercus lobata HOM05D005055 ORTHO05D006327 2.8e-09 65.9 49 67.3
Actinidia12556 Actinidia chinensis HOM05D005055 ORTHO05D006327 3.6e-09 65.5 63 52.4
Cfa019592 Carpinus fangiana HOM05D005055 ORTHO05D006327 3.6e-09 65.5 49 65.3
Lalb_Chr25g0285991 Lupinus albus HOM05D005055 ORTHO05D006327 3.6e-09 65.5 45 68.9
Lj1A833T50 Lonicera japonica HOM05D005055 ORTHO05D006327 4.7e-09 65.1 49 65.3
Sed0010915 Sechium edule HOM05D005055 ORTHO05D006327 4.7e-09 65.1 59 57.6
TPR.G9221 Trifolium pratense HOM05D005055 ORTHO05D006327 4.7e-09 65.1 51 62.7
Ca_04006_v3 Cicer arietinum L. HOM05D005055 ORTHO05D006327 6.1e-09 64.7 47 68.1
Thhalv10013462m.g Eutrema salsugineum HOM05D005055 ORTHO05D006327 6.1e-09 64.7 46 65.2
Lsat_1_v5_gn_9_99580 Lactuca sativa HOM05D005055 ORTHO05D006327 6.1e-09 64.7 45 71.1
Medtr2g078120 Medicago truncatula HOM05D005055 ORTHO05D006327 6.1e-09 64.7 47 63.8
Nn1g04357 Nelumbo nucifera HOM05D005055 ORTHO05D006327 6.1e-09 64.7 48 64.6
Psat5g239800 Pisum sativum HOM05D005055 ORTHO05D006327 6.1e-09 64.7 47 68.1
Sp6g24360 Schrenkiella parvula HOM05D005055 ORTHO05D006327 6.1e-09 64.7 49 63.3
HanXRQChr13g0389111 Helianthus annuus HOM05D005055 ORTHO05D006327 8.0e-09 64.3 49 63.3
VMungo1080G1419 Vigna mungo HOM05D005055 ORTHO05D006327 8.0e-09 64.3 47 68.1
Carub.0006s1841 Capsella rubella HOM05D005055 ORTHO05D006327 1.0e-08 63.9 49 61.2
ATR0602G274 Amborella trichopoda HOM05D005055 ORTHO05D006327 1.4e-08 63.5 51 60.8
MELO3C016098.2 Cucumis melo HOM05D005055 ORTHO05D006327 1.4e-08 63.5 45 66.7
Glyma.13G271500 Glycine max HOM05D005055 ORTHO05D006327 1.4e-08 63.5 45 68.9
Lj3g0015470 Lotus japonicus HOM05D005055 ORTHO05D006327 1.4e-08 63.5 47 68.1
BcaB01g04815 Brassica carinata HOM05D005055 ORTHO05D006327 1.8e-08 63.2 49 61.2
C03p11360 Brassica napus HOM05D005055 ORTHO05D006327 1.8e-08 63.2 49 61.2
ClCG07G009980 Citrullus lanatus HOM05D005055 ORTHO05D006327 1.8e-08 63.2 49 63.3
Potri.001G376600 Populus trichocarpa HOM05D005055 ORTHO05D006327 1.8e-08 63.2 47 66.0
Sabra16G0248000 Salix brachista HOM05D005055 ORTHO05D006327 1.8e-08 63.2 47 61.7
Aa31sc170G10 Aethionema arabicum HOM05D005055 ORTHO05D006327 2.3e-08 62.8 45 62.2
FAN21G0251 Fragaria x ananassa HOM05D005055 ORTHO05D006327 2.3e-08 62.8 53 62.3
Cpa.g.sc131.64 Carica papaya HOM05D005055 ORTHO05D006327 3.1e-08 62.4 49 61.2
EL10Ac4g08316 Beta vulgaris HOM05D005055 ORTHO05D006327 4.0e-08 62.0 52 59.6
BraA03t10293Z Brassica rapa HOM05D005055 ORTHO05D006327 4.0e-08 62.0 49 59.2
AUR62036100 Chenopodium quinoa HOM05D005055 ORTHO05D006327 4.0e-08 62.0 52 57.7
Haze_09351 Corylus avellana HOM05D005055 ORTHO05D006327 4.0e-08 62.0 46 67.4
PGR083G1414 Punica granatum HOM05D005055 ORTHO05D006327 4.0e-08 62.0 47 61.7
TAR629G2461 Trochodendron aralioides HOM05D005055 ORTHO05D006327 4.0e-08 62.0 49 67.3
A03p09780 Brassica napus HOM05D005055 ORTHO05D006327 5.2e-08 61.6 49 59.2
CsaV3_4G008350 Cucumis sativus L. HOM05D005055 ORTHO05D006327 5.2e-08 61.6 45 64.4
Mapoly0033s0012 Marchantia polymorpha HOM05D005055 ORTHO05D006327 5.2e-08 61.6 61 52.5
PSO782G0219 Papaver somniferum HOM05D005055 ORTHO05D006327 5.2e-08 61.6 52 59.6
Phvul.005G067800 Phaseolus vulgaris HOM05D005055 ORTHO05D006327 5.2e-08 61.6 45 66.7
BcaB05g22884 Brassica carinata HOM05D005055 ORTHO05D006327 6.8e-08 61.2 49 59.2
FAN25G1310 Fragaria x ananassa HOM05D005055 ORTHO05D006327 6.8e-08 61.2 53 60.4
HPP92_012839 Vanilla planifolia HOM05D005055 ORTHO05D006327 8.9e-08 60.8 52 55.8
arahy.Tifrunner.gnm1.ann1.1K9JH7 Arachis hypogaea HOM05D005055 ORTHO05D006327 1.2e-07 60.5 45 64.4
arahy.Tifrunner.gnm1.ann1.254HEG Arachis hypogaea HOM05D005055 ORTHO05D006327 1.2e-07 60.5 45 64.4
CDE10G0422 Ceratophyllum demersum HOM05D005055 ORTHO05D006327 1.2e-07 60.5 47 61.7
DCAR_013144 Daucus carota HOM05D005055 ORTHO05D006327 1.2e-07 60.5 45 68.9
PSO063G4771 Papaver somniferum HOM05D005055 ORTHO05D006327 1.2e-07 60.5 52 59.6
Aqoxy3G02852 Aquilegia oxysepala HOM05D005055 ORTHO05D006327 1.5e-07 60.1 47 61.7
Eucgr.F01210 Eucalyptus grandis HOM05D005055 ORTHO05D006327 1.5e-07 60.1 52 55.8
MBI06_g18006_MAGBIO Magnolia biondii HOM05D005055 ORTHO05D006327 1.5e-07 60.1 51 60.8
AT5G20040 Arabidopsis thaliana HOM05D005055 ORTHO05D006327 2.0e-07 59.7 49 59.2
BcaC03g13727 Brassica carinata HOM05D005055 ORTHO05D006327 2.0e-07 59.7 49 57.1
CSS0050211 Camellia sinensis var. sinensis HOM05D000878 ORTHO05D001408 3.4e-07 58.9 38 71.1
AL6G31580 Arabidopsis lyrata HOM05D005055 ORTHO05D006327 4.4e-07 58.5 49 57.1
Aqoxy4G00472 Aquilegia oxysepala HOM05D005055 ORTHO05D006327 7.5e-07 57.8 108 40.7
THA.LOC104799653 Tarenaya hassleriana HOM05D005055 ORTHO05D006327 1.3e-06 57.0 45 62.2
A02p05980 Brassica napus HOM05D005055 ORTHO05D006327 1.7e-06 56.6 49 55.1
BNapus_Darmor_BZH_scaffold_38p01860 Brassica napus HOM05D005055 ORTHO05D006327 1.7e-06 56.6 49 55.1
Hund02369 Selenicereus undatus HOM05D005055 ORTHO05D006327 3.7e-06 55.5 34 73.5
CARHR192800 Cardamine hirsuta HOM05D005055 ORTHO05D006327 6.4e-06 54.7 52 57.7
SEGI_34325 Sequoiadendron giganteum HOM05D005055 ORTHO05D006327 6.4e-06 54.7 63 42.9
unitig_86.g29833 Utricularia gibba HOM05D005055 ORTHO05D006327 8.3e-06 54.3 31 80.6
Zm00001eb271810 Zea mays HOM05D005055 ORTHO05D006327 8.3e-06 54.3 52 50.0


User provided reference genes

Program Settings